BAC Information

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BAC

Clone NameB6Ng01-138C09
Chromosome18 (Build37)
Map Location 37,640,346 - 37,808,019
singlet/doubletdoublet
Overlap genePcdhb16, Pcdhb17, Pcdhb18, Pcdhb19, Pcdhb20, Pcdhb21, Pcdhb22, Slc25a2, Taf7
Upstream geneHbegf, Slc4a9, LOC624979, Eif4ebp3, Sra1, Apbb3, Slc35a4, E230025N22Rik, Cd14, Tmco6, Ndufa2, Ik, Wdr55, Dnd1, Hars, Hars2, Zmat2, EG627427, Pcdha1, Pcdha@, Pcdha2, Pcdha3, Pcdha4, Pcdha5, Pcdha6, Pcdha7, Pcdha8, Pcdha9, Pcdha10, Pcdha11, Pcdha12, Pcdhac1, Pcdhac2, Pcdhb1, Pcdhb2, Pcdhb3, Pcdhb4, Pcdhb5, Pcdhb6, Pcdhb7, Pcdhb8, Pcdhb9, Pcdhb10, Pcdhb11, Pcdhb12, Pcdhb13, Pcdhb14, Pcdhb15
Downstream geneEG666693, Pcdhg@, Pcdhga1, Pcdhga2, Pcdhga3, Pcdhgb1, Pcdhga4, Pcdhgb2, Pcdhga5, Pcdhga6, Pcdhga7, Pcdhgb4, Pcdhga8, Pcdhgb5, Pcdhga9, Pcdhgb6, Pcdhga10, Pcdhgb7, Pcdhga11, Pcdhgb8, Pcdhga12, Pcdhgc3, Pcdhgc4, Pcdhgc5, Diap1, Hdac3, 4631403P03Rik, Fchsd1, Centd3, Pcdh1, LOC100042583, 1700086O06Rik, 0610009O20Rik, Pcdh12, Rnf14, Gnpda1, LOC240219, LOC100041839, Ndfip1, Spry4, 9630014M24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138C09.bB6Ng01-138C09.g
ACCDH937486DH937487
length1901,073
definitionDH937486|Mus musculus domesticus DNA, BAC clone: B6Ng01-138C09, 5' end.DH937487|Mus musculus domesticus DNA, BAC clone: B6Ng01-138C09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,807,830 - 37,808,019)(37,640,346 - 37,641,442)
sequence
tccagtagaaaaaggtcacgcgtggcaaaggctcaatagtgacgaggttg
gtttccttgattatcaactggccctgctgcttgtgaggacagaccaacag
acagactcaggctcagaaggcagggctgcctgcagctgctgtcattcccc
ctgaggggttgaataaggtgtgtgtgtgtgtgggggggtg
gaattcagggtgtgttctctcactgaatacacccgacatagcaatgctca
aacacaacgaggtctaatcagataggagaacgaggggctcactgggacct
ctgccttttgctttatttggcctctactggactgtctttgttgatgtttt
ctcttaaaaatcttacttagccacatggttcctcattagcttgctattag
ttttcatatcactactttaagctgctttctactttgttcgtttgcttgct
tgcttgcttgcttgcttgcttgttttttggttggtgttgaggtttcagaa
tggtgtcccttatttacctggtaggttgaaagagcatagcagtagcattg
agttttcacttctgttaaatacttgccagtcagagaaactgcatcagcca
gtattgattttttttcctttctttgttgccattccacatttctttcttgc
cagtcatgtgcttagttaaaagaatacattttcactgtcttttttttttt
ctctagcaaatagattagggcatatggttagcttatagtgagatgtaaga
tgtggtgccttccacagctcttcagttgaagagaaactgggggggggacc
tatgcataccaagtaaggtctgtctctctgatctaccactttcaataccc
aagaacacttgtaaagggagatgtctcacctggaaagggatttcaccctt
tgttcatgttatgttcttcctaggatgttcgtggtataatgagcgcacaa
atactcatgttggctctgtgataggtgtgacgggctaaagtagcatgaaa
tggacttagctgtgatgatccctggcaactcagagttctcatattattcc
ccgcgttgccatttcttagccttttaaacattcagaaataaggagtccca
tgtcattatctagctttatgctatggtcagtctatgctatggaatctatt
tgtgtgttggggtgttggtgcctgtggtgcatgagtgctgcagatgtctg
cgcctctgcagttgaggtcggagttgatgtacctcgttgcccagtatctg
actagcagggagctcttggaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_37807830_37808019
seq2: B6Ng01-138C09.b_50_239 (reverse)

seq1  CACCCCCCCACACACACACACACCTTATTCAACCCCTCAGGGGGAATGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCCCCACACACACACACACCTTATTCAACCCCTCAGGGGGAATGAC  50

seq1  AGCAGCTGCAGGCAGCCCTGCCTTCTGAGCCTGAGTCTGTCTGTTGGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTGCAGGCAGCCCTGCCTTCTGAGCCTGAGTCTGTCTGTTGGTCT  100

seq1  GTCCTCACAAGCAGCAGGGCCAGTTGATAATCAAGGAAACCAACCTCGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCACAAGCAGCAGGGCCAGTTGATAATCAAGGAAACCAACCTCGTC  150

seq1  ACTATTGAGCCTTTGCCACGCGTGACCTTTTTCTACTGGA  190
      ||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTGAGCCTTTGCCACGCGTGACCTTTTTCTACTGGA  190

seq1: chr18_37640346_37641442
seq2: B6Ng01-138C09.g_68_1140

seq1  GAATTCAGGGTGTGTTCTCTCACTGAATACACCCGACATAGCAATGCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGTGTGTTCTCTCACTGAATACACCCGACATAGCAATGCTCA  50

seq1  AACACAACGAGGTCTAATCAGATAGGAGAACGAGGGGCTCACTGGGACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAACGAGGTCTAATCAGATAGGAGAACGAGGGGCTCACTGGGACCT  100

seq1  CTGCCTTTTGCTTTATTTGGCCTCTACTGGACTGTCTTTGTTGATGTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTTTGCTTTATTTGGCCTCTACTGGACTGTCTTTGTTGATGTTTT  150

seq1  CTCTTAAAAATCTTACTTAGCCACATGGTTCCTCATTAGCTTGCTATTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAAAAATCTTACTTAGCCACATGGTTCCTCATTAGCTTGCTATTAG  200

seq1  TTTTCATATCACTACTTTAAGCTGCTTTCTACTTTGTTCGTTTGCTTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATATCACTACTTTAAGCTGCTTTCTACTTTGTTCGTTTGCTTGCT  250

seq1  TGCTTGCTTGCTTGCTTGCTTGTTTTTTGGTTGGTGTTGAGGTTTCAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGCTTGCTTGCTTGCTTGTTTTTTGGTTGGTGTTGAGGTTTCAGAA  300

seq1  TGGTGTCCCTTATTTACCTGGTAGGTTGAAAGAGCATAGCAGTAGCATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTCCCTTATTTACCTGGTAGGTTGAAAGAGCATAGCAGTAGCATTG  350

seq1  AGTTTTCACTTCTGTTAAATACTTGCCAGTCAGAGAAACTGCATCAGCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCACTTCTGTTAAATACTTGCCAGTCAGAGAAACTGCATCAGCCA  400

seq1  GTATTGATTTTTTTTCCTTTCTTTGTTGCCATTCCACATTTCTTTCTTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGATTTTTTTTCCTTTCTTTGTTGCCATTCCACATTTCTTTCTTGC  450

seq1  CAGTCATGTGCTTAGTTAAAAGAATACATTTTCACTGTCTTTTTTTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCATGTGCTTAGTTAAAAGAATACATTTTCACTGTCTTTTTTTTTTT  500

seq1  CTCTAGCAAATAGATTAGGGCATATGGTTAGCTTATAGTGAGATGTAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGCAAATAGATTAGGGCATATGGTTAGCTTATAGTGAGATGTAAGA  550

seq1  TGTGGTGCCTTCCACAGCTCTTCAGTTGAAGAGAAACTGGGGGGGGGACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTGCCTTCCACAGCTCTTCAGTTGAAGAGAAACTGGGGGGGGGACC  600

seq1  TATGCATACCAAGTAAGGTCTGTCTCTCTGATCTACCACTTTCAATACCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCATACCAAGTAAGGTCTGTCTCTCTGATCTACCACTTTCAATACCC  650

seq1  AAGAACACTTGTAAAGGGAGATGTCTCACCTGGAAAGGGATTTCACCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACACTTGTAAAGGGAGATGTCTCACCTGGAAAGGGATTTCACCCTT  700

seq1  TGTTCATGTTATGTTCTTCCTAGGATGTTCGTGGTATAATGAGCGCACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATGTTATGTTCTTCCTAGGATGTTCGTGGTATAATGAGCGCACAA  750

seq1  ATACTCATGTTGGCTCTGTGATAGGTGTGACGGGCTAAAGTAGCATGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCATGTTGGCTCTGTGATAGGTGTGACGGGCTAAAGTAGCATGAAA  800

seq1  TGGACTTAGCTGTGATGATCCCTGGCAACTCAGGAGTTCTCATATTATTC  850
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGGACTTAGCTGTGATGATCCCTGGCAACTCA-GAGTTCTCATATTATTC  849

seq1  CCCGCGTTGCCAATTTCTTAGCCTTTTTAAACATTCAGAAATAAAGGAAG  900
      ||||||||||| ||||||||||| ||||||||||||||||||||  | ||
seq2  CCCGCGTTGCC-ATTTCTTAGCC-TTTTAAACATTCAGAAATAA--GGAG  895

seq1  TCCCATGTCATTATTCTAGCTTTTATGCTATGGTCAGTTCTTATGCTATG  950
      ||||||||||||| |||||| |||||||||||||||||   |||||||||
seq2  TCCCATGTCATTA-TCTAGC-TTTATGCTATGGTCAGT--CTATGCTATG  941

seq1  GAATCTATTTGTGTGTTTGTGTGTTTGTGTGCCTGTTGGTGCATGAGTGC  1000
      ||||||||||||||||| | |||||   ||||||| ||||||||||||||
seq2  GAATCTATTTGTGTGTTGGGGTGTT--GGTGCCTG-TGGTGCATGAGTGC  988

seq1  TTGCAGATGTCCTTGCGCCTCTGCATGTTGAGGTCGGAAGTTGATGTCTA  1050
       ||||||||||  |||||||||||| ||||||||||| ||||||||  ||
seq2  -TGCAGATGTC--TGCGCCTCTGCA-GTTGAGGTCGG-AGTTGATG--TA  1031

seq1  CCTTCGTTGCTCAGTTATCTAGACTAGCCAGGGAGCTCTGTGGAAAC  1097
      || ||||||| ||| ||||| |||||| ||||||||||| |||||||
seq2  CC-TCGTTGCCCAG-TATCT-GACTAG-CAGGGAGCTCT-TGGAAAC  1073