BAC Information

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BAC

Clone NameB6Ng01-139C15
Chromosome18 (Build37)
Map Location 89,149,817 - 89,150,915
singlet/doubletsinglet
Overlap geneRttn
Upstream geneLOC100039961, LOC100039972, LOC623177, LOC665497, LOC100040003, LOC623208, Socs6
Downstream geneCd226, Dok6, LOC383320
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139C15.bB6Ng01-139C15.g
ACCDH938220DH938221
length1,0921,260
definitionDH938220|Mus musculus domesticus DNA, BAC clone: B6Ng01-139C15, 5' end.DH938221|Mus musculus domesticus DNA, BAC clone: B6Ng01-139C15, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactctgtagaccaggatggcctggaactcagaaatccgcctgcc
tctgcctcccaagtgctgggattaaaggcgtgcaccaccactgcccggct
gaagaattatttttaaagattaatttctattatttttaataatctgtagc
tgtgtgtctgttatggatatgtgcacatcagtgcaggtacctgaggaagc
ctggtgttggatcctccagtgctgaagttacagacacacgtgagccgcct
gtcctgggtgctctgagtaagagcaagctggctgctctcccttcaacagt
ctcctttccttttctgttgtgtctcccctctgagacttctggctcttcac
cttaaggatgactatagcagaagtcccatttttctgaagcttctcggtgc
tggatttacttgcttagacatttccagagtgcttttctgtttatccccag
attctcaatcattatgggcctggggactaggattcagactgttacagttc
atgtgggacttagggaattttaatgcataaaaacattcttttgcttgaaa
aacagtgatttgtattttaccaaagccttgtttatcctttttgagatgta
gcatatgcagatgtgctagcagccacaggcttttcagaggaaaaatgccc
cctggtggacagatgggatacaggttgacctaggcagaatagtctctaca
acatgatttctctgtgcttgtataccatgccttgaaagtaaatacaaaac
tctagtcatttgttatcctgtttttcagtccctttttacttgggggcttc
actcaactctgatacttgagtatttgtattttatgttgcaattaccatag
aattagaggctatgggctctcgttaatattattaatgggctttctgcaaa
tgatcccagagagctgtgcccactgtttagcatagaaagagttctaggac
ttctttatctctattatacacagctgatagactagcctctgggtaggtaa
cactgaccagcaactctgttctgtgggcttatactttaggtggacagtta
aatcaggtgtttcctgagaagaagtgctctaagaaattcaaa
gaattcctaagcagaaaaatcttgcaactcaaacacaaaagtaattttta
catggacataagcaatgctgtggactggcattgtttaggaccacagcatc
tttcactttcacacctcaaaggcaacacaaatccacacaattcaaaagat
cttaagaaatgttcatattatatgctgaactggctcatacctttagctgc
catttggccttagtcacacacataaaaatagtactccaagctcactgcag
actgtaacatgtatttcagctgaaagatggaggagatttctggctcattt
ttttgtatgattcatctgccctaagtttctcctggagccatttcagatca
ttccaagtataaaacacatgatcaaaacctccccaaatactgagaacaga
ggggataaaacaaaatataaactttggacacaggacctagacactctgtg
ttggaactgacctgaaagtcttctctctgaggactatagttcatggtagt
agatggcatcgttctggcttccaaaggagggaagcaactaagagtcctaa
ttagataacataacatgtttatgatctataacaatgactagcatggcaca
ataaccctaaggttgcaggagtggcacctataccctggtggtaaccaact
gctctctaatgtatttcctccacaagaaaaaaatgatgcctagtactcta
agcctagccaactatacagggatagcaaagtcatggatctcatagaaaac
ctacaaatgctagtgtactaatacagaacaattcctaaccacaccctaat
atttgatattatactcacagataagtataggtctcaaccctcctcaaaaa
agtctctttgcaagagatgataatcagtatagaaaaccacaaccatcaaa
attatagatcaaagattgtgtggagcccagtcctaactggtacattgaca
tacacacctaccctaaggctcaggatcactgcagaagacaagactgaaga
ttgtaagcaggaagttactataggatttgatctctcagaaatgttcagag
aagcgggggtgtgggtgccgcacggctttaatcccagcacttcaggaggc
agaagcaagcgaatttctgaatttgagcaggctggtctacaagtgagttc
cagacgcagggctatactggaaaactctgtctctcaaaacaaaaaacgaa
cactaaagaaggtcgagagcggcctcatgaccttaaactggcttaaattg
agacgtctac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_89149817_89150915
seq2: B6Ng01-139C15.b_46_1137

seq1  GAATTCACTCTGTAGACCAGGATGGCCTGGAACTCAGAAATCCGCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGACCAGGATGGCCTGGAACTCAGAAATCCGCCTGCC  50

seq1  TCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCACCACCACTGCCCGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCACCACCACTGCCCGGCT  100

seq1  GAAGAATTATTTTTAAAGATTAATTTCTATTATTTTTAATAATCTGTAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAATTATTTTTAAAGATTAATTTCTATTATTTTTAATAATCTGTAGC  150

seq1  TGTGTGTCTGTTATGGATATGTGCACATCAGTGCAGGTACCTGAGGAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTCTGTTATGGATATGTGCACATCAGTGCAGGTACCTGAGGAAGC  200

seq1  CTGGTGTTGGATCCTCCAGTGCTGAAGTTACAGACACACGTGAGCCGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGTTGGATCCTCCAGTGCTGAAGTTACAGACACACGTGAGCCGCCT  250

seq1  GTCCTGGGTGCTCTGAGTAAGAGCAAGCTGGCTGCTCTCCCTTCAACAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGGTGCTCTGAGTAAGAGCAAGCTGGCTGCTCTCCCTTCAACAGT  300

seq1  CTCCTTTCCTTTTCTGTTGTGTCTCCCCTCTGAGACTTCTGGCTCTTCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTCCTTTTCTGTTGTGTCTCCCCTCTGAGACTTCTGGCTCTTCAC  350

seq1  CTTAAGGATGACTATAGCAGAAGTCCCATTTTTCTGAAGCTTCTCGGTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGGATGACTATAGCAGAAGTCCCATTTTTCTGAAGCTTCTCGGTGC  400

seq1  TGGATTTACTTGCTTAGACATTTCCAGAGTGCTTTTCTGTTTATCCCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTACTTGCTTAGACATTTCCAGAGTGCTTTTCTGTTTATCCCCAG  450

seq1  ATTCTCAATCATTATGGGCCTGGGGACTAGGATTCAGACTGTTACAGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCAATCATTATGGGCCTGGGGACTAGGATTCAGACTGTTACAGTTC  500

seq1  ATGTGGGACTTAGGGAATTTTAATGCATAAAAACATTCTTTTGCTTGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGGACTTAGGGAATTTTAATGCATAAAAACATTCTTTTGCTTGAAA  550

seq1  AACAGTGATTTGTATTTTACCAAAGCCTTGTTTATCCTTTTTGAGATGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTGATTTGTATTTTACCAAAGCCTTGTTTATCCTTTTTGAGATGTA  600

seq1  GCATATGCAGATGTGCTAGCAGCCACAGGCTTTTCAGAGGAAAAATGCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATGCAGATGTGCTAGCAGCCACAGGCTTTTCAGAGGAAAAATGCCC  650

seq1  CCTGGTGGACAGATGGGATACAGGTTGACCTAGGCAGAATAGTCTCTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTGGACAGATGGGATACAGGTTGACCTAGGCAGAATAGTCTCTACA  700

seq1  ACATGATTTCTCTGTGCTTGTATACCATGCCTTGAAAGTAAATACAAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGATTTCTCTGTGCTTGTATACCATGCCTTGAAAGTAAATACAAAAC  750

seq1  TCTAGTCATTTGTTATCCTGTTTTTCAGTCCCTTTTTACTTGGGGGCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTCATTTGTTATCCTGTTTTTCAGTCCCTTTTTACTTGGGGGCTTC  800

seq1  ACTCAAACTCTGATACTTGAGTATTTGTATTTTATGTTGCAATTACCATA  850
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTC-AACTCTGATACTTGAGTATTTGTATTTTATGTTGCAATTACCATA  849

seq1  GAATTAGAGGCTATGGGCTCTCGTTAATATTATTAATGGGCTTTCTGCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAGAGGCTATGGGCTCTCGTTAATATTATTAATGGGCTTTCTGCAA  899

seq1  ATGATCCCAGAGAGCTGTGCCCACTGTTTTAGCATAGAAAGAGTTCTAGG  950
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATGATCCCAGAGAGCTGTGCCCACTG-TTTAGCATAGAAAGAGTTCTAGG  948

seq1  ACTTCTTTATCTCCTATTATACAACAGCTGATAGACTAGCCTCTGGGTAG  1000
      |||||||||||| ||||||||| |||||||||||||||||||||||||||
seq2  ACTTCTTTATCT-CTATTATAC-ACAGCTGATAGACTAGCCTCTGGGTAG  996

seq1  GTAACACTGACCAAGCAACTCTGTTCTGTGGGCTTATACTTTAGGTGGAC  1050
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GTAACACTGACC-AGCAACTCTGTTCTGTGGGCTTATACTTTAGGTGGAC  1045

seq1  AGTTAAAATCAGGGTTGTTT-CTGAGAAGAAGTGCTCTAAAGAAATCAAA  1099
      |||| ||||||||  ||||| |||||||||||||||||||  || |||||
seq2  AGTT-AAATCAGG--TGTTTCCTGAGAAGAAGTGCTCTAAGAAATTCAAA  1092