BAC Information

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BAC

Clone NameB6Ng01-140C16
Chromosome18 (Build37)
Map Location 44,302,218 - 44,303,259
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042051, EG666594, Stk32a, Dpysl3, LOC100042074, LOC100042807, Jakmip2, Spink3, Scgb3a2, Gm94, Spink5, EG433178, LOC666969, EG433180, Spink12
Downstream geneLOC100042855, 9530002K18Rik, Spink11, Npy6r, Myot, Dcp2, Mcc, LOC100042883, Ythdc2, LOC626309
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140C16.bB6Ng01-140C16.g
ACCDH938969DH938970
length1,2001,038
definitionDH938969|Mus musculus domesticus DNA, BAC clone: B6Ng01-140C16, 5' end.DH938970|Mus musculus domesticus DNA, BAC clone: B6Ng01-140C16, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttaagtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattccc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatccttccatctt
ctgagatcttctgagatcttctttaatttctttcttcagagacttgaaga
ttttatcatacagatctttcactccttagtcagagtcacgccagatattt
tatattatttgtgactatgagaggtgtgtttccctaatttcttctcagct
gttattcttgtatagaagaaggccatgactgttggttatttatatccagc
tactcaccgaagcgttatcagtagagttctctgaggagttttgggtacta
tatatcatccaatcacttggaagtgaatggacttcctttcattgattccg
gatccctggtggaacctgctatctcagactagtgaaagcgagaaacttgc

gaattcttttgcaaagttcaaagaaaatgtgtgcttactgtttcctaaga
atcaaagagctggttaacagactgctgattcataggataattaaaaggga
acctggaataaatgactgaattcatatgtaaattaaagactgggcttttg
ctatgcatgagatgagctaagcagaaagtgatagcaattttccaattttc
tctagcaagagctgagctgtctagagatctctggagagtgaaaacagctc
ttcaagagtttttttttttttttttttttttcttaaaaggatttctactt
ggtggaagatctaataatttttttatagcagcttttctgttggttagaca
aaccatgagctatccagatagcttttacaatttttactagccgagagagc
tgtttcaagcagagagtttttttttaaattaggtattttcctcatttaca
ttttcaatgctatcccaaaggtcccccatacccacccccccatcccctac
ccacccactccccctttttggccctggcgttcccctgtactggggcatat
aaagtttacaagtccaatgcgcctctctttgcagtgatggccgactaggc
catcttttgatacatatgcagctagagacaagactccggggtactggtta
gttcatattgttgttccagtttttgtaatagcaagaacaaaactgtctag
agcagatcagtacatgtagacatgagggactctaagggagttttccagtt
ccacaccctccttacggcttcccctttctacttggagtcaaggctaggcc
aagattccattctccgctcacaggaacatttcttgataaaaaaatctcag
aatgtactgactgatagtcacctgactcctctggaaattccggtagagtt
caaatgcgcgtcatggttgctaccaatagatttaaaggtcaatatgctta
gccatgagttggactgtacttggctgatgtatacttgtgctcctaaaaag
tattaaaactcctttaaaaggcattcaggagttaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_44302218_44303259
seq2: B6Ng01-140C16.g_67_1104

seq1  GAATTCTTTTGCAAAGTTCAAAGAAAATGTGTGCTTACTGTTTCCTAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGCAAAGTTCAAAGAAAATGTGTGCTTACTGTTTCCTAAGA  50

seq1  ATCAAAGAGCTGGTTAACAGACTGCTGATTCATAGGATAATTAAAAGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAGAGCTGGTTAACAGACTGCTGATTCATAGGATAATTAAAAGGGA  100

seq1  ACCTGGAATAAATGACTGAATTCATATGTAAATTAAAGACTGGGCTTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGAATAAATGACTGAATTCATATGTAAATTAAAGACTGGGCTTTTG  150

seq1  CTATGCATGAGATGAGCTAAGCAGAAAGTGATAGCAATTTTCCAATTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCATGAGATGAGCTAAGCAGAAAGTGATAGCAATTTTCCAATTTTC  200

seq1  TCTAGCAAGAGCTGAGCTGTCTAGAGATCTCTGGAGAGTGAAAACAGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCAAGAGCTGAGCTGTCTAGAGATCTCTGGAGAGTGAAAACAGCTC  250

seq1  TTCAAGAGTTTTTTTTTTTTTTTTTTTTTTTCTTAAAAGGATTTCTACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGAGTTTTTTTTTTTTTTTTTTTTTTTCTTAAAAGGATTTCTACTT  300

seq1  GGTGGAAGATCTAATAATTTTTTTATAGCAGCTTTTCTGTTGGTTAGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAAGATCTAATAATTTTTTTATAGCAGCTTTTCTGTTGGTTAGACA  350

seq1  AACCATGAGCTATCCAGATAGCTTTTACAATTTTTACTAGCCGAGAGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATGAGCTATCCAGATAGCTTTTACAATTTTTACTAGCCGAGAGAGC  400

seq1  TGTTTCAAGCAGAGAGTTTTTTTTTAAATTAGGTATTTTCCTCATTTACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCAAGCAGAGAGTTTTTTTTTAAATTAGGTATTTTCCTCATTTACA  450

seq1  TTTTCAATGCTATCCCAAAGGTCCCCCATACCCACCCCCCCATCCCCTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAATGCTATCCCAAAGGTCCCCCATACCCACCCCCCCATCCCCTAC  500

seq1  CCACCCACTCCCCCTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCACTCCCCCTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATAT  550

seq1  AAAGTTTACAAGTCCAATGCGCCTCTCTTTGCAGTGATGGCCGACTAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTACAAGTCCAATGCGCCTCTCTTTGCAGTGATGGCCGACTAGGC  600

seq1  CATCTTTTGATACATATGCAGCTAGAGACAAGACTCCGGGGTACTGGTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTTGATACATATGCAGCTAGAGACAAGACTCCGGGGTACTGGTTA  650

seq1  GTTCATATTGTTGTTCCAGTTTTTGTAATAGCAAGAACAAAACTGTCTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATATTGTTGTTCCAGTTTTTGTAATAGCAAGAACAAAACTGTCTAG  700

seq1  AGCAGATCAGTACATGTAGACATGAGGGACTCTAA-GGAGTTTTCCAGTT  749
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGCAGATCAGTACATGTAGACATGAGGGACTCTAAGGGAGTTTTCCAGTT  750

seq1  CCACACCCTCCTTACGGCTTCCCCTTCCTACCTGGAGTCAAGGCTAGGCC  799
      |||||||||||||||||||||||||| |||| ||||||||||||||||||
seq2  CCACACCCTCCTTACGGCTTCCCCTTTCTACTTGGAGTCAAGGCTAGGCC  800

seq1  AAGA-TCCATTCTCCGCTCACAGGAACA-TTCTTGATTAAAAAAATCTCA  847
      |||| ||||||||||||||||||||||| ||||||| |||||||||||||
seq2  AAGATTCCATTCTCCGCTCACAGGAACATTTCTTGA-TAAAAAAATCTCA  849

seq1  GAATGTACTGACTGATAGTCACCTGAC-CCTCTGGAAAATTCCAGGTAGA  896
      ||||||||||||||||||||||||||| ||||||| ||||||| ||||||
seq2  GAATGTACTGACTGATAGTCACCTGACTCCTCTGG-AAATTCC-GGTAGA  897

seq1  GTTCAAATGCGCGTCATGGTTGCTAACCAATAGATTTAAAGGTCAATATG  946
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GTTCAAATGCGCGTCATGGTTGCT-ACCAATAGATTTAAAGGTCAATATG  946

seq1  CTTAGCCAATGAGTTTGAACTGTAACCTTGCTGATGTA-ACCTGTGCCCC  995
      ||||||| ||||| ||| ||||| || | ||||||||| || ||||| ||
seq2  CTTAGCC-ATGAG-TTGGACTGT-ACTTGGCTGATGTATACTTGTGCTCC  993

seq1  TAAAAAGTATAAAAACTCCTTTTAATAGTCATTCAGGAGTATAAAAA  1042
      |||||||||| |||||||| ||||| || ||||||||||| ||||||
seq2  TAAAAAGTATTAAAACTCC-TTTAAAAGGCATTCAGGAGT-TAAAAA  1038