BAC Information

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BAC

Clone NameB6Ng01-140D14
Chromosome11 (Build37)18 (Build37)
Map Location 97,334,240 - 97,335,12242,235,595 - 42,236,066
singlet/doubletsingletsinglet
Overlap gene4933428G20Rik
Upstream geneSkap1, Snx11, Cbx1, LOC629750, Nfe2l1, Copz2, LOC100040373, LOC665436, Cdk5rap3, Atad4, Pnpo, D030028A08Rik, Sp2, Sp6, Scrn2, Lrrc46, Mrpl10, Osbpl7, Tbx21, Tbkbp1, Kpnb1, Npepps, EG665490, Mrpl45, Gpr179, Socs7
Downstream geneP140, 2410003L11Rik, E130012A19Rik, Mllt6, Mel13, Pcgf2, Psmb3, Pip5k2b, 2810474C18Rik, Ccdc49, LOC100040708, 1700001P01Rik, Rpl23, Lasp1, B230217C12Rik, Fbxo47, Plxdc1, Arl5c, Cacnb1, Rpl19, Stac2, Fbxl20, LOC665606, Pparbp, LOC666613, LOC100039982, Crkrs, Neurod2, Ppp1r1b, Stard3, Tcap, Pnmt, Perld1, Erbb2, 1810046J19Rik, Grb7, Ikzf3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140D14.bB6Ng01-140D14.g
ACCDH939011DH939012
length876660
definitionDH939011|Mus musculus domesticus DNA, BAC clone: B6Ng01-140D14, 5' end.DH939012|Mus musculus domesticus DNA, BAC clone: B6Ng01-140D14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(97,334,240 - 97,335,122)(42,235,595 - 42,236,066)
sequence
gaattctctctacagctctgcccatttcctctgtcattcatagtatgcac
ctatatttttattgggtcatcttgtgtgctcttgatttgtgggaacaatt
ttttgtatatgatatacattgagctttgctggtctttgcagttatttcta
tagccccacccctgactttttatttttctcttagacaaggtcttgctata
ctgcccaggctaacctcatacttgaaacaatcctcctgcctcagccttct
gggtgttggggttacaggtgtataccatcacaggcagctggcatttccct
ttggacttttcagtctagaaactgagagagagcagcatttaaaattatat
ttacagaattatacttatttatttattgaatatggagggcaggagccata
gcattcatgtggaggtcagaggttaccctcctagagtcagttcccctccc
accaggtgggactggggattgaactcaggtcatcaggtttggcagcgagt
tcatttacccactgagccacctcacaaaccctgaaaacatttgtttggtt
gtttggttgtttgtttggttgttttgttggtttttcaagacagggtttct
ctttgtatccttggctgtcctggaactcactctatagaacaggctggctt
tgaactctcagagatctgcctgcctctgcatcccaagtgctgggattaaa
ggcgtgcaccaccactgcctggctgaggacagtatttttaaaggcccaaa
caattctctttctttaatggattgagtatttcatatttagaccctgtgct
tataaaatattctccctgtgattttttttcttttgagaaagttcttactt
cagcttaggttggcctcacactagag
gaattcccagctctgtcttcatgcctgggcagcctggagatgagcatatc
ctcccagtccagtttcatgcctgagtgctacagtcaagtggccttcccca
tggctttgctggtagctccactcagcaggtgatgttcttgggcctattcc
tgctgagaccccagtgtgctttctgcttcctggcctcaagctccgggtcc
aattgactcctcagttctctgtgcttagacaccgagcttcaacaattttt
aaatgtccccttcctctttaaagattcatttttactgtgcacaccgtggc
ctgcactttgaccccagcgcttgggagatgggaggctgaggcaagtggat
ctctgagttcgaggccagcctggtctacagagtgagtttcaagacatcca
gggctacacagagaaaccttgtcaggaggagtagagtgtttttatcttat
tcgtataagtattttgcgcacacatatgtaaatgtaccacgtacctggta
cttgtagaggccaaaagaagatggcaaatcttcaggagctgcagttacag
aaggttatgagctgtcgtgtgggttctgggaactgaaccctgtttctctg
aaggagcagctctaaactgctgagccatctctctaacctcttcatggtgg
tggtggtggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_97334240_97335122
seq2: B6Ng01-140D14.b_41_916

seq1  GAATTCTCTCTACAGCTCTGCCCATTTCCTCTGTCATTCATAGTATGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTACAGCTCTGCCCATTTCCTCTGTCATTCATAGTATGCAC  50

seq1  CTATATTTTTATTGGGTCATCTTGTGTGCTCTTGATTTGTGGGAACAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATTTTTATTGGGTCATCTTGTGTGCTCTTGATTTGTGGGAACAATT  100

seq1  TTTTGTATATGATATACATTGAGCTTTGCTGGTCTTTGCAGTTATTTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTATATGATATACATTGAGCTTTGCTGGTCTTTGCAGTTATTTCTA  150

seq1  TAGCCCCACCCCTGACTTTTTATTTTTCTCTTAGACAAGGTCTTGCTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCCACCCCTGACTTTTTATTTTTCTCTTAGACAAGGTCTTGCTATA  200

seq1  CTGCCCAGGCTAACCTCATACTTGAAACAATCCTCCTGCCTCAGCCTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCAGGCTAACCTCATACTTGAAACAATCCTCCTGCCTCAGCCTTCT  250

seq1  GGGTGTTGGGGTTACAGGTGTATACCATCACAGGCAGCTGGCATTTCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTTGGGGTTACAGGTGTATACCATCACAGGCAGCTGGCATTTCCCT  300

seq1  TTGGACTTTTCAGTCTAGAAACTGAGAGAGAGCAGCATTTAAAATTATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACTTTTCAGTCTAGAAACTGAGAGAGAGCAGCATTTAAAATTATAT  350

seq1  TTACAGAATTATACTTATTTATTTATTGAATATGGAGGGCAGGAGCCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGAATTATACTTATTTATTTATTGAATATGGAGGGCAGGAGCCATA  400

seq1  GCATTCATGTGGAGGTCAGAGGTTACCCTCCTAGAGTCAGTTCCCCTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCATGTGGAGGTCAGAGGTTACCCTCCTAGAGTCAGTTCCCCTCCC  450

seq1  ACCAGGTGGGACTGGGGATTGAACTCAGGTCATCAGGTTTGGCAGCGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGTGGGACTGGGGATTGAACTCAGGTCATCAGGTTTGGCAGCGAGT  500

seq1  TCATTTACCCACTGAGCCACCTCACAAACCCTGAAAACATTTGTTTGGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTACCCACTGAGCCACCTCACAAACCCTGAAAACATTTGTTTGGTT  550

seq1  GTTTGGTTGTTTGTTTGGTTGTTTTGTTGGTTTTTCAAGACAGGGTTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGTTGTTTGTTTGGTTGTTTTGTTGGTTTTTCAAGACAGGGTTTCT  600

seq1  CTTTGTATCCTTGGCTGTCCTGGAACTCACTCTATAGAACAGGCTGGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTATCCTTGGCTGTCCTGGAACTCACTCTATAGAACAGGCTGGCTT  650

seq1  TGAACTCTCAGAGATCTGCCTGCCTCTGCATCCCAAGTGCTGGGATTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCTCAGAGATCTGCCTGCCTCTGCATCCCAAGTGCTGGGATTAAA  700

seq1  GGCGTGCACCACCACTGCCTGGCTGAGGACAGTATTTTTTAAAGGCCCAA  750
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GGCGTGCACCACCACTGCCTGGCTGAGGACAGTA-TTTTTAAAGGCCCAA  749

seq1  ACAATTACTCTTTCTTTAATGGATTGAGTATTTCATATTTAGACCCTGTG  800
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATT-CTCTTTCTTTAATGGATTGAGTATTTCATATTTAGACCCTGTG  798

seq1  CTTATAAAAATATTTCTCCCTGTGATTTTTTTTTCTTTTGAGACAAGTTC  850
      ||||| |||||| |||||||||||| ||||||||||||||||| ||||||
seq2  CTTAT-AAAATA-TTCTCCCTGTGA-TTTTTTTTCTTTTGAGA-AAGTTC  844

seq1  TTACTCCAGCTTAGGCTGGCCTCACACTTAGAG  883
      ||||| ||||||||| ||||||||||| |||||
seq2  TTACTTCAGCTTAGGTTGGCCTCACAC-TAGAG  876

seq1: chr18_42235595_42236066
seq2: B6Ng01-140D14.g_417_725

seq1  TCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAG  50
      |||||||||||||||||||||||||||| |||||||| || |||| ||||
seq2  TCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTTCAAGACATCCAG  50

seq1  GGCTACACAGAGAAACCCTGTCTCAAAACAAAACAAAACAAAACAAAACA  100
      ||||||||||||||||| |||                             
seq2  GGCTACACAGAGAAACCTTGT-----------------------------  71

seq1  AAACAAAACAAAACAAAACAAAACACAAAACAACACAAAACAGCAAACAT  150
                                                     || 
seq2  -----------------------------------------------CAG  74

seq1  GACATCAACAAGCTGAGACTTGTGTAATTTTAGCACCACTACCCCAGACG  200
      ||              || | | ||  |||||                  
seq2  GA-------------GGAGTAGAGTGTTTTTA------------------  93

seq1  GAAGCCTCTTTCAATATTGTCTGGTCTGATTAGTGATGCTTGATTAGGGT  250
            |||     |||       ||  || |||        |||  |  
seq2  ------TCT-----TAT-------TCGTATAAGT--------ATTTTGCG  117

seq1  CTGCTGATCTG-ATATGACCCAAAAGCTTAACAAATAAGGCTTGGATCTA  299
      |  |  || || | |||  |||    | || |   ||   ||||  |  |
seq2  C-ACACATATGTAAATGTACCA----CGTACCTGGTA---CTTG--TAGA  157

seq1  AGTCCAAACACTCTTGCATCTATTGACAAAACCAAGAAGAAACTAAATCT  349
       | | ||| |   | |||  | ||  ||  | |  | ||  ||  ||  |
seq2  GGCCAAAAGAAGATGGCAAATCTT--CAGGAGC-TGCAGTTACAGAAGGT  204

seq1  TATCTCCTTACATGCATTTTCT------TCTTTCCTTCGTGTCTCCAGTA  393
      |||   ||  | ||    ||||      |    |||   | |||  || |
seq2  TATGAGCTGTCGTGTGGGTTCTGGGAACTGAACCCTGTTTCTCTGAAGGA  254

seq1  TCTACCTC---ACTTGTGTATAACCTCTCTGTCTACTTTCTTTTTGTGAG  440
       | | |||   |||  ||    | |  ||| ||||   ||||        
seq2  GC-AGCTCTAAACTGCTG----AGCCATCTCTCTAACCTCTT--------  291

seq1  CAGAAAACAAAAGGAATGGTGGTGGTGGTGGT  472
                     |||||||||||||||||
seq2  --------------CATGGTGGTGGTGGTGGT  309