BAC Information

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BAC

Clone NameB6Ng01-140E12
Chromosome18 (Build37)
Map Location 29,149,457 - 29,254,747
singlet/doubletdoublet
Overlap genenone
Upstream geneEG271505, EG625997, BC051408
Downstream geneLOC100040930, 4930578E11Rik, LOC666073
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140E12.bB6Ng01-140E12.g
ACCDH939055DH939056
length835917
definitionDH939055|Mus musculus domesticus DNA, BAC clone: B6Ng01-140E12, 5' end.DH939056|Mus musculus domesticus DNA, BAC clone: B6Ng01-140E12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,253,912 - 29,254,747)(29,149,457 - 29,150,371)
sequence
gaattcctatgcaagctcaagtctggtaaatatattggaaaactttgacc
aagtaagaaaacctgaattctatctccaaccacttcttattgagcctagt
ctaattgtacaatatatccatcagtaaatagggaaagcatcttgggatac
tgcactgagaaaaacaatacaccttagtgagagtctcacagcactagtcc
agatctgctaagatagccttatcatcataccatcctcttgctaaggaggt
gaatgatgtagttgtgctgatgtggagcaccaccaacaaggaccttactc
atccagttctctgttaagtgcacttagataataatggttagaggtaccat
gactactggaacatctgatgaccatgtcttagatggaactgagtgaaatg
cctactcataagagtttgtatttcagtcacttcctccagaggtcttaaca
ctgagaaacaagcaccaatttcatgccttcactttcccatataaatatta
ctcacctctttcttatcttgcaagacaatgccagtgcaggattgctcccc
gcagcacaagtttgacaaatctaaaccctcaggagtgcattagtgaggtc
caggctgagcactctttctgaagtagaaggtggcattgctcaagttttca
ttaataataattaacaacacaagattaggatgtttcattttagagtagct
gttagctgtcccttaaacaaagttcatactataagatattaacatgtttc
ttcttctcgtcctctccctcctcctcctccaccacctcctccttctttct
ctctctctctctctctctctctctctctctctctc
gaattcagtactcaagacggcacaggtactttcctccttcagctaagatg
gtgaagtgatttgtttaagccttcacacctagtaaagagcatactcaggc
attcatagaagacctatttgaagtcaagaccaagagttgtaagtatgatg
tcttactggacacaacactagttccaccaagattccacacctcattacag
agctagtaggacagaaactataagtcattcatttgagtaagtgatgctcc
gcactttggataagttatcctacattttatctcctcattatcgatagtaa
ctttaattaagaagaaaattaccatttcaaggaaaatcatttttatcttc
tactttggtttatgtgttccaggctttaggtatgaaaccttgcactctat
tgctacagagatagtcttttcaattggcctttaatggtgtataatttata
cttcaagtttagagcttacatttgcagagctctcttcacacagtagagaa
tagtattaattttacacacaagtaaattaacttttcttaaggccctttgt
ggactagcacatcctgcattttaatttgtggcaaaatctaactgtatata
tgtttgacaacacttttttgttccttctcttttcctgttttttccaggaa
tgcattagttactttttctttttgttctgaaaaacatgcctagcaaaatc
aacttaatgaaaaaacattgtgctttggtttcaaggggtaaaaatcatca
tgggacagaaggcatgatgaaagaattatgaggtgcctcttttttttttt
actcccaccctgttttttagttattttttttaatttaaaaaaaatatttt
taaggtagcttcttcacatggatcttcaagaaggcagaagaaacagatgg
attctgggtctcactct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_29253912_29254747
seq2: B6Ng01-140E12.b_44_878 (reverse)

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAGAAGGAGGA  50
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG-AAAGAAGGAGGA  49

seq1  GGAGGAGGAGGAGGAGGAGGGAGAGGACGAGAAGAAGAAACATGTTAATA  100
      || || ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGGAGGAGGAGGAGGGAGAGGACGAGAAGAAGAAACATGTTAATA  99

seq1  TCTTATAGTATGAACTTTGTTTAAGGGACAGCTAACAGCTACTCTAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATAGTATGAACTTTGTTTAAGGGACAGCTAACAGCTACTCTAAAAT  149

seq1  GAAACATCCTAATCTTGTGTTGTTAATTATTATTAATGAAAACTTGAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACATCCTAATCTTGTGTTGTTAATTATTATTAATGAAAACTTGAGCA  199

seq1  ATGCCACCTTCTACTTCAGAAAGAGTGCTCAGCCTGGACCTCACTAATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCACCTTCTACTTCAGAAAGAGTGCTCAGCCTGGACCTCACTAATGC  249

seq1  ACTCCTGAGGGTTTAGATTTGTCAAACTTGTGCTGCGGGGAGCAATCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTGAGGGTTTAGATTTGTCAAACTTGTGCTGCGGGGAGCAATCCTG  299

seq1  CACTGGCATTGTCTTGCAAGATAAGAAAGAGGTGAGTAATATTTATATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGCATTGTCTTGCAAGATAAGAAAGAGGTGAGTAATATTTATATGG  349

seq1  GAAAGTGAAGGCATGAAATTGGTGCTTGTTTCTCAGTGTTAAGACCTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTGAAGGCATGAAATTGGTGCTTGTTTCTCAGTGTTAAGACCTCTG  399

seq1  GAGGAAGTGACTGAAATACAAACTCTTATGAGTAGGCATTTCACTCAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGTGACTGAAATACAAACTCTTATGAGTAGGCATTTCACTCAGTT  449

seq1  CCATCTAAGACATGGTCATCAGATGTTCCAGTAGTCATGGTACCTCTAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTAAGACATGGTCATCAGATGTTCCAGTAGTCATGGTACCTCTAAC  499

seq1  CATTATTATCTAAGTGCACTTAACAGAGAACTGGATGAGTAAGGTCCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTATCTAAGTGCACTTAACAGAGAACTGGATGAGTAAGGTCCTTG  549

seq1  TTGGTGGTGCTCCACATCAGCACAACTACATCATTCACCTCCTTAGCAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGGTGCTCCACATCAGCACAACTACATCATTCACCTCCTTAGCAAG  599

seq1  AGGATGGTATGATGATAAGGCTATCTTAGCAGATCTGGACTAGTGCTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGGTATGATGATAAGGCTATCTTAGCAGATCTGGACTAGTGCTGTG  649

seq1  AGACTCTCACTAAGGTGTATTGTTTTTCTCAGTGCAGTATCCCAAGATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCTCACTAAGGTGTATTGTTTTTCTCAGTGCAGTATCCCAAGATGC  699

seq1  TTTCCCTATTTACTGATGGATATATTGTACAATTAGACTAGGCTCAATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTATTTACTGATGGATATATTGTACAATTAGACTAGGCTCAATAA  749

seq1  GAAGTGGTTGGAGATAGAATTCAGGTTTTCTTACTTGGTCAAAGTTTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGGTTGGAGATAGAATTCAGGTTTTCTTACTTGGTCAAAGTTTTCC  799

seq1  AATATATTTACCAGACTTGAGCTTGCATAGGAATTC  836
      ||||||||||||||||||||||||||||||||||||
seq2  AATATATTTACCAGACTTGAGCTTGCATAGGAATTC  835

seq1: chr18_29149457_29150371
seq2: B6Ng01-140E12.g_66_982

seq1  GAATTCAGTACTCAAGACGGCACAGGTACTTTCCTCCTTCAGCTAAGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTACTCAAGACGGCACAGGTACTTTCCTCCTTCAGCTAAGATG  50

seq1  GTGAAGTGATTTGTTTAAGCCTTCACACCTAGTAAAGAGCATACTCAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGTGATTTGTTTAAGCCTTCACACCTAGTAAAGAGCATACTCAGGC  100

seq1  ATTCATAGAAGACCTATTTGAAGTCAAGACCAAGAGTTGTAAGTATGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATAGAAGACCTATTTGAAGTCAAGACCAAGAGTTGTAAGTATGATG  150

seq1  TCTTACTGGACACAACACTAGTTCCACCAAGATTCCACACCTCATTACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACTGGACACAACACTAGTTCCACCAAGATTCCACACCTCATTACAG  200

seq1  AGCTAGTAGGACAGAAACTATAAGTCATTCATTTGAGTAAGTGATGCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGTAGGACAGAAACTATAAGTCATTCATTTGAGTAAGTGATGCTCC  250

seq1  GCACTTTGGATAAGTTATCCTACATTTTATCTCCTCATTATCGATAGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTTGGATAAGTTATCCTACATTTTATCTCCTCATTATCGATAGTAA  300

seq1  CTTTAATTAAGAAGAAAATTACCATTTCAAGGAAAATCATTTTTATCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATTAAGAAGAAAATTACCATTTCAAGGAAAATCATTTTTATCTTC  350

seq1  TACTTTGGTTTATGTGTTCCAGGCTTTAGGTATGAAACCTTGCACTCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTGGTTTATGTGTTCCAGGCTTTAGGTATGAAACCTTGCACTCTAT  400

seq1  TGCTACAGAGATAGTCTTTTCAATTGGCCTTTAATGGTGTATAATTTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACAGAGATAGTCTTTTCAATTGGCCTTTAATGGTGTATAATTTATA  450

seq1  CTTCAAGTTTAGAGCTTACATTTGCAGAGCTCTCTTCACACAGTAGAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAGTTTAGAGCTTACATTTGCAGAGCTCTCTTCACACAGTAGAGAA  500

seq1  TAGTATTAATTTTACACACAAGTAAATTAACTTTTCTTAAGGCCCTTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATTAATTTTACACACAAGTAAATTAACTTTTCTTAAGGCCCTTTGT  550

seq1  GGACTAGCACATCCTGCATTTTAATTTGTGGCAAAATCTAACTGTATATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTAGCACATCCTGCATTTTAATTTGTGGCAAAATCTAACTGTATATA  600

seq1  TGTTTGACAACACTTTTTTGTTCCTTCTCTTTTCCTGTTTTTTCCAGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGACAACACTTTTTTGTTCCTTCTCTTTTCCTGTTTTTTCCAGGAA  650

seq1  TGCATTAGTTACTTTTTCTTTTTGTTCTGAAAAACATGCCTAGCAAAATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTAGTTACTTTTTCTTTTTGTTCTGAAAAACATGCCTAGCAAAATC  700

seq1  AACTTAATGAAAAAACATTGTGCTTTGGTTTCAAGGGGTAAAAATCATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAATGAAAAAACATTGTGCTTTGGTTTCAAGGGGTAAAAATCATCA  750

seq1  TGGGACAGAAGGCATGATGAAAGAATTATGAGGTGCCTCTTTTTTTTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACAGAAGGCATGATGAAAGAATTATGAGGTGCCTCTTTTTTTTTTT  800

seq1  ACTCCCACCCTGTTTTTTAGTTATTTTTTTTAATTT-AAAAAAATATTTT  849
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACTCCCACCCTGTTTTTTAGTTATTTTTTTTAATTTAAAAAAAATATTTT  850

seq1  T-AGGTAGC-TCTTCACATGGATCTTCAAGAAGGCAGAAGAAACAGATGG  897
      | ||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTAGCTTCTTCACATGGATCTTCAAGAAGGCAGAAGAAACAGATGG  900

seq1  ATTCTGGGTCTCAACTCT  915
      |||||||||||| |||||
seq2  ATTCTGGGTCTC-ACTCT  917