BAC Information

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BAC

Clone NameB6Ng01-140G06
Chromosome18 (Build37)
Map Location 50,738,785 - 50,855,820
singlet/doubletdoublet
Overlap genenone
Upstream geneDtwd2, Dmxl1, Tnfaip8, Hsd17b4, LOC626721, LOC667233, Gm93, Hdhd1a
Downstream geneLOC100042373, LOC100042385, Prr16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140G06.bB6Ng01-140G06.g
ACCDH939135DH939136
length1,1281,112
definitionDH939135|Mus musculus domesticus DNA, BAC clone: B6Ng01-140G06, 5' end.DH939136|Mus musculus domesticus DNA, BAC clone: B6Ng01-140G06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,738,785 - 50,739,931)(50,854,697 - 50,855,820)
sequence
gaattcctccatagtttttgctttggttcctgcatccagtttcctatctt
gagttcctgccctgacacttccccagtgatggactgttatttggaagtgt
aacacgagataaaccctgtcctccctaagttgcttttggtcatagttttt
atcgtagcaacagaagcataactaatatcttcctttaccaccaataatca
ttattgtttaatcatttctgaagtggctctcttataatgaattatatcaa
agacatttgcttgaagtcacttgaagaaaaatgctaactgcctcaaatta
ctgtcaccttacagttctagactgtaaacgtagagagagtatagcagcat
tgtttgcaagctgatcactgcaggaaattatgtgcttccagtgttatggc
taaacaatgacagggcccaaatttttagtttcaggttttttgctgaatac
tctataagttcaatagattttactggttgatatttaccttaattatctta
taattacattattttatgtcctttccagaatttaacatatatacaggtct
cagttaatgaagacatttatgtatgtgaaacctgagataggtattttgga
tagttaaaaatgagacctcataatttctattttcaaggaatctagaaatc
atacaacatagtgatctttcccataaaaatgcaggcacatacatccacaa
acagaaactaacttaagtatatggagagagataaaataatttagagatat
attttttcaagggttatatattaaatgatgatgttgtatataaaacatat
aatacaattctaaagagcaaagataaaaacacaatgagttttattgagtt
gattaaaactaagaacaagctttcaaaatttccatgaggatagcagattt
gaggagacatggaagaaatggagtgctgatttggtttgactagttatatc
aaacacgtagagatatatggatgtaatttgttacacacatttctaaaaag
aatatattctgttatttatacttcttttttaatagtatttttcaaactat
agattcagcaagctgtaactgaaagatggtctcttacagaaaaattcctg
tctatccaataaatttaaaaaagcactc
gaattctttcagacttttggttcttcctgttatgactatgtgactgaaag
tagaccccattaacatcagactcaggaaacttaatttcttcatggaatga
aactttaaaatgtgtactgtgatcatgtgtgtgcataggtgtgctgtgca
catgtgtgtgcataggtgtgcttgcctatgcttgtacatgtagaggccac
atgttgatggtgtcagatgccttccagattgtttgccatgtgttttgaaa
gagtctctccctgaacctgaagcttactatttaaacttcactagtgggaa
agttatcccctgagacctgcccatctccttgactaacaatgggatggcag
atgtgtgttgcccagacagtccttttagatgagtgctgggattttaactt
gtgtcttcctgctttcactttacccactgagtcatctcactagctcctga
gagtttaaaacttttgagattgtttgaaggtttaaaactttttaagaagt
tttgatcctacaaagaaaagagtggattgaacattgctgttaatttgtag
gaatatttttacaaatatctctttttctctgattacttggatatcatatt
tttcattcaagagcatgcaaaaatgtattattgacagtttaaaagccata
gcccatgaaactaagttcttcctttattctatgatacaggcttttcctct
ggtccctgtgtattgtctgatgaaaagtgtcatgacactgtgcatgtttc
ttgtgatttttcttttctctctttaaattctttgtttgtgctttcttaca
ttattccactactattcttttgctacacacacacacacacacacacacac
acacagagagagagagagagagagagagagagagagagagagagagagag
agagagataagaagaatagacgagagacggagagacgagagacgagagag
aatcatagattgggtttgtgaaaggtagggagggtaatgtggaggagtca
tgatctggatttattattggaagaagtttttcatttaaaatgcggataat
ttttaagatttttataaatccattggtaggggaattcttagacctacttc
cttctttgagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_50738785_50739931
seq2: B6Ng01-140G06.b_45_1172

seq1  GAATTCCTCCATAGTTTTTGCTTTGGTTCCTGCATCCAGTTTCCTATCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCATAGTTTTTGCTTTGGTTCCTGCATCCAGTTTCCTATCTT  50

seq1  GAGTTCCTGCCCTGACACTTCCCCAGTGATGGACTGTTATTTGGAAGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCCTGCCCTGACACTTCCCCAGTGATGGACTGTTATTTGGAAGTGT  100

seq1  AACACGAGATAAACCCTGTCCTCCCTAAGTTGCTTTTGGTCATAGTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACGAGATAAACCCTGTCCTCCCTAAGTTGCTTTTGGTCATAGTTTTT  150

seq1  ATCGTAGCAACAGAAGCATAACTAATATCTTCCTTTACCACCAATAATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTAGCAACAGAAGCATAACTAATATCTTCCTTTACCACCAATAATCA  200

seq1  TTATTGTTTAATCATTTCTGAAGTGGCTCTCTTATAATGAATTATATCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTTTAATCATTTCTGAAGTGGCTCTCTTATAATGAATTATATCAA  250

seq1  AGACATTTGCTTGAAGTCACTTGAAGAAAAATGCTAACTGCCTCAAATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTTGCTTGAAGTCACTTGAAGAAAAATGCTAACTGCCTCAAATTA  300

seq1  CTGTCACCTTACAGTTCTAGACTGTAAACGTAGAGAGAGTATAGCAGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCACCTTACAGTTCTAGACTGTAAACGTAGAGAGAGTATAGCAGCAT  350

seq1  TGTTTGCAAGCTGATCACTGCAGGAAATTATGTGCTTCCAGTGTTATGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGCAAGCTGATCACTGCAGGAAATTATGTGCTTCCAGTGTTATGGC  400

seq1  TAAACAATGACAGGGCCCAAATTTTTAGTTTCAGGTTTTTTGCTGAATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAATGACAGGGCCCAAATTTTTAGTTTCAGGTTTTTTGCTGAATAC  450

seq1  TCTATAAGTTCAATAGATTTTACTGGTTGATATTTACCTTAATTATCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAAGTTCAATAGATTTTACTGGTTGATATTTACCTTAATTATCTTA  500

seq1  TAATTACATTATTTTATGTCCTTTCCAGAATTTAACATATATACAGGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTACATTATTTTATGTCCTTTCCAGAATTTAACATATATACAGGTCT  550

seq1  CAGTTAATGAAGACATTTATGTATGTGAAACCTGAGATAGGTATTTTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAATGAAGACATTTATGTATGTGAAACCTGAGATAGGTATTTTGGA  600

seq1  TAGTTAAAAATGAGACCTCATAATTTCTATTTTCAAGGAATCTAGAAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAAAAATGAGACCTCATAATTTCTATTTTCAAGGAATCTAGAAATC  650

seq1  ATACAACATAGTGATCTTTCCCATAAAAATGCAGGCACATACATCCACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAACATAGTGATCTTTCCCATAAAAATGCAGGCACATACATCCACAA  700

seq1  ACAGAAACTAACTTAAGTATATGGAGAGAGATAAAATAATTTAGAGATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAACTAACTTAAGTATATGGAGAGAGATAAAATAATTTAGAGATAT  750

seq1  ATTTTTTCAAGGGTTATATATTAAATGATGATGTTGTATATAAAACATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTCAAGGGTTATATATTAAATGATGATGTTGTATATAAAACATAT  800

seq1  AATACAATTCTAAAGAGCAAAGATAAAAACACAATGAGTTTTATTGAGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAATTCTAAAGAGCAAAGATAAAAACACAATGAGTTTTATTGAGTT  850

seq1  GATTAAAACTAAGAACAAGCTTTCAAAATTTCCATGAGGATAGCAGATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAACTAAGAACAAGCTTTCAAAATTTCCATGAGGATAGCAGATTT  900

seq1  GAGGAGACATGGAAGAAATGGAGTGCTGATTTGGTTTGACTAGTTATATC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGACATGGAAGAAATGGAGTGCTGATTTGGTTTGACTAGTTATATC  950

seq1  AAACACGTAGAGATAATATGGATGTAATTTGTTACAACAACATTTCTTAA  1000
      |||||||||||||| |||||||||||||||||||||   ||||||| |||
seq2  AAACACGTAGAGAT-ATATGGATGTAATTTGTTACA--CACATTTC-TAA  996

seq1  AAAGAATATTATTCTTGTTTATTTATAACTTCTTTTTTTAATAGTATTTT  1050
      |||||||| ||||||   |||||||| ||||| |||||||||||||||||
seq2  AAAGAATA-TATTCT--GTTATTTAT-ACTTC-TTTTTTAATAGTATTTT  1041

seq1  TCAAAACTATAGGATTCAGCAAAGCTGTACCTGAAAAGATGGTCTCTTAT  1100
      || |||||||| |||||||| |||||||| ||| ||||||||||||||| 
seq2  TC-AAACTATA-GATTCAGC-AAGCTGTAACTG-AAAGATGGTCTCTTA-  1086

seq1  CAGGATAAATTTCTGTTCTATCCAATAATATTTTAAAAAAAGCACTC  1147
      || || ||||| ||| |||||||||||| ||||  ||||||||||||
seq2  CA-GAAAAATTCCTG-TCTATCCAATAA-ATTT--AAAAAAGCACTC  1128

seq1: chr18_50854697_50855820
seq2: B6Ng01-140G06.g_70_1181 (reverse)

seq1  CACTCAAAGAA-GAGGATAGACTAAGAATCTCCCTACCAATTGAATTAAT  49
      ||||||||||| || |   | ||||||||  ||||||||| || ||| ||
seq2  CACTCAAAGAAGGAAGTAGGTCTAAGAATTCCCCTACCAA-TGGATTTAT  49

seq1  AAAAGTTTTAAAAATATACAGCATTTTAAAATTGAAAATAACTTCTTTTC  99
      |||| | ||||||||   | ||||||||||  |||||  ||||||  |||
seq2  AAAAATCTTAAAAATTATCCGCATTTTAAA--TGAAA--AACTTC--TTC  93

seq1  ATATAATAAATCCTGATCATGGCTCCT-CACATTACCCTCCCTACCTTTT  148
        ||||||||||| ||||||| ||||| |||||||||||||||||| |||
seq2  CAATAATAAATCCAGATCATGACTCCTCCACATTACCCTCCCTACC-TTT  142

seq1  CACAAACCCAATTCTATGATTTCTCTCTCTGTCTCTCTGTCTCTCTGTCT  198
      ||||||||||| ||||||| ||||||||| ||||||| ||||||| ||||
seq2  CACAAACCCAA-TCTATGA-TTCTCTCTC-GTCTCTC-GTCTCTCCGTCT  188

seq1  CTCTGTCTCTTTCTTTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  248
      ||| ||||  |||||  | |||||||||||||||||||||||||||||||
seq2  CTC-GTCT-ATTCTTCTTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  236

seq1  CTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGT  298
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  286

seq1  GTAGCAAAAGAATAGTAGTGGAATAATGTAAGAAAGCACAAACAAAGAAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAAAAGAATAGTAGTGGAATAATGTAAGAAAGCACAAACAAAGAAT  336

seq1  TTAAAGAGAGAAAAGAAAAATCACAAGAAACATGCACAGTGTCATGACAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGAGAGAAAAGAAAAATCACAAGAAACATGCACAGTGTCATGACAC  386

seq1  TTTTCATCAGACAATACACAGGGACCAGAGGAAAAGCCTGTATCATAGAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATCAGACAATACACAGGGACCAGAGGAAAAGCCTGTATCATAGAA  436

seq1  TAAAGGAAGAACTTAGTTTCATGGGCTATGGCTTTTAAACTGTCAATAAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGAAGAACTTAGTTTCATGGGCTATGGCTTTTAAACTGTCAATAAT  486

seq1  ACATTTTTGCATGCTCTTGAATGAAAAATATGATATCCAAGTAATCAGAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTTGCATGCTCTTGAATGAAAAATATGATATCCAAGTAATCAGAG  536

seq1  AAAAAGAGATATTTGTAAAAATATTCCTACAAATTAACAGCAATGTTCAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAGATATTTGTAAAAATATTCCTACAAATTAACAGCAATGTTCAA  586

seq1  TCCACTCTTTTCTTTGTAGGATCAAAACTTCTTAAAAAGTTTTAAACCTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTCTTTTCTTTGTAGGATCAAAACTTCTTAAAAAGTTTTAAACCTT  636

seq1  CAAACAATCTCAAAAGTTTTAAACTCTCAGGAGCTAGTGAGATGACTCAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAATCTCAAAAGTTTTAAACTCTCAGGAGCTAGTGAGATGACTCAG  686

seq1  TGGGTAAAGTGAAAGCAGGAAGACACAAGTTAAAATCCCAGCACTCATCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAAAGTGAAAGCAGGAAGACACAAGTTAAAATCCCAGCACTCATCT  736

seq1  AAAAGGACTGTCTGGGCAACACACATCTGCCATCCCATTGTTAGTCAAGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGACTGTCTGGGCAACACACATCTGCCATCCCATTGTTAGTCAAGG  786

seq1  AGATGGGCAGGTCTCAGGGGATAACTTTCCCACTAGTGAAGTTTAAATAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGGCAGGTCTCAGGGGATAACTTTCCCACTAGTGAAGTTTAAATAG  836

seq1  TAAGCTTCAGGTTCAGGGAGAGACTCTTTCAAAACACATGGCAAACAATC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTTCAGGTTCAGGGAGAGACTCTTTCAAAACACATGGCAAACAATC  886

seq1  TGGAAGGCATCTGACACCATCAACATGTGGCCTCTACATGTACAAGCATA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGCATCTGACACCATCAACATGTGGCCTCTACATGTACAAGCATA  936

seq1  GGCAAGCACACCTATGCACACACATGTGCACAGCACACCTATGCACACAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGCACACCTATGCACACACATGTGCACAGCACACCTATGCACACAC  986

seq1  ATGATCACAGTACACATTTTAAAGTTTCATTCCATGAAGAAATTAAGTTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCACAGTACACATTTTAAAGTTTCATTCCATGAAGAAATTAAGTTT  1036

seq1  CCTGAGTCTGATGTTAATGGGGTCTACTTTCAGTCACATAGTCATAACAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTCTGATGTTAATGGGGTCTACTTTCAGTCACATAGTCATAACAG  1086

seq1  GAAGAACCAAAAGTCTGAAAGAATTC  1124
      ||||||||||||||||||||||||||
seq2  GAAGAACCAAAAGTCTGAAAGAATTC  1112