BAC Information

Click to search

BAC

Clone NameB6Ng01-140H22
Chromosome18 (Build37)
Map Location 51,785,579 - 51,786,595
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042373, LOC100042385, Prr16
Downstream geneEG240289, Ftmt, Srfbp1, Lox, Zfp474
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140H22.bB6Ng01-140H22.g
ACCDH939210DH939211
length1,031857
definitionDH939210|Mus musculus domesticus DNA, BAC clone: B6Ng01-140H22, 5' end.DH939211|Mus musculus domesticus DNA, BAC clone: B6Ng01-140H22, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactttgtagacccggctggtctcaaactcagaaatccgcctgat
tcggcctccgagtgctgggattaaaggcatgccccaccacgcccggctta
gttcacaattcttaaagcacatctttaggtgatctcacataaataatcct
tacaaaaagtgtgggagtgtcagtaccgcaggatgcatactggatttaca
caggatttaggggtcctctttcttgttttaccatgggtcctttgactagc
atccttcactatacagtgatggggaacacaacgagtctctgagttcattg
gcatttcaggatggtatggatatacaataaagtggttggtaaattatttc
ttccttgttaactcatttagaagtactcctttttaaattctaaaccatta
tttaaaatattaaaattctgtcagtttcatgtcttaagtaatgttacatt
tccatctacaaacataaatgatcaaacacactgcctcagtaaagaacttc
cgttttaattatagtgaaatgaattaacaatacagatctgtttgaaaaat
atgtattttaatgttacagtgaaatcttttaaaaatgttttattggttac
tttatttattcacgtttcaaatgttatcctctttcccggtttcccctctg
caacaccccataccattctccctccccctgcttctatgagggtgctccac
cactcacccaccctctcccacctcactgccctagcataacttggtcttgt
tgcttgtatcttatctccttcctctcgttaaatcaaggcaggaaaatgtc
attaaatcagaagcccatattttgggttttcatttgtgttaataagattg
tgtaaatacagcatgaaacattatttctataatatcatgacagaaaaata
tcctctttatgatgtatatgttatattatatatgtgattgtttttgcaag
ggctaacaaggataagggattcatttagttttattgcttaatgattttgc
tattcaggccttagatcatcaagggatcata

gaattccctgtttagctctgtaccctaaaaagggttatttgcttctctgg
agtctaatttcctgagttttttgaatatattgatattcaaagaattagct
ctctattggatgtagcattggtaaagattgtttcccaatcttttggttgc
cgttttgtcgtattgacagtgtcctttgccttatagaagctttgcaaatt
tataaagttccatttggtgattgttgatcttagagcataagccattggtg
ttctgttcaggaaatttttccctgtgcccatgtactcaaggctcttccct
attttctctactattagtttcagtgtatctggttatatattgaggtcctt
ggacttgaactttgtacaagaagataagaatggatcaatttacattcttc
tacttgctgacaatttgttgaaaatgctgtctttttttccaatgggtgat
tttagctcctctgtcaaagatccagagagtataggtatgtgagtttattt
cttggtttttaattctatttcattgaccttcctgcctgtcattgtaacaa
tactatgcaattttttaacactattgctctttagtacagcttgaggtcag
ggacagtggttactctaggagttcttttattgttgagaataggtttttgt
ttttgtttttgtttttgataatctgggtttttttgttattccaaatgaat
tttgcaaattgtttctttataactctctgaagattattagcccctaaagc
tcaaattactcaagatataattcacagaccacgtgaatcttcaagaaaaa
ggacactaagtgtgggtgcttaagtcctttcttaaaagaagtacaaatac
ggcacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_51785579_51786595
seq2: B6Ng01-140H22.b_42_1051 (reverse)

seq1  GGCCTTGAATAGCAAAAATCA-TAAGCAAATAAAAATCTAAATGAAATCC  49
      |||| |||||||| ||||||| ||||| |||||||  ||||||| |||||
seq2  GGCC-TGAATAGC-AAAATCATTAAGC-AATAAAA--CTAAATG-AATCC  44

seq1  CTTATCCTTTGTTAGCCCTTTGCAAATACAATCACATATATAATATAACA  99
      ||||||| |||||||||| ||||||| |||||||||||||||||||||||
seq2  CTTATCC-TTGTTAGCCC-TTGCAAAAACAATCACATATATAATATAACA  92

seq1  TATACATCATAAAGAGGATATTTTTCTGTCATGATATTATAGAAATAATG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATCATAAAGAGGATATTTTTCTGTCATGATATTATAGAAATAATG  142

seq1  TTTCATGCTGTATTTACACAATCTTATTAACACAAATGAAAACCCAAAAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGCTGTATTTACACAATCTTATTAACACAAATGAAAACCCAAAAT  192

seq1  ATGGGCTTCTGATTTAATGACATTTTCCTGCCTTGATTTAACGAGGGGAA  249
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATGGGCTTCTGATTTAATGACATTTTCCTGCCTTGATTTAACGAGAGGAA  242

seq1  GGAGATAAGATACAAGCAACAAGACCAAGTTATGCTAGGGCAGTGAGGTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATAAGATACAAGCAACAAGACCAAGTTATGCTAGGGCAGTGAGGTG  292

seq1  GGAGAGGGTGGGTGAGTGGTGGAGCACCCTCATAGAAGCAGGGGGAGGGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGGTGGGTGAGTGGTGGAGCACCCTCATAGAAGCAGGGGGAGGGA  342

seq1  GAATGGTATGGGGTGTTGCAGAGGGGAAACCGGGAAAGAGGATAACATTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGTATGGGGTGTTGCAGAGGGGAAACCGGGAAAGAGGATAACATTT  392

seq1  GAAACGTGAATAAATAAAGTAACCAATAAAACATTTTTAAAAGATTTCAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACGTGAATAAATAAAGTAACCAATAAAACATTTTTAAAAGATTTCAC  442

seq1  TGTAACATTAAAATACATATTTTTCAAACAGATCTGTATTGTTAATTCAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACATTAAAATACATATTTTTCAAACAGATCTGTATTGTTAATTCAT  492

seq1  TTCACTATAATTAAAACGGAAGTTCTTTACTGAGGCAGTGTGTTTGATCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTATAATTAAAACGGAAGTTCTTTACTGAGGCAGTGTGTTTGATCA  542

seq1  TTTATGTTTGTAGATGGAAATGTAACATTACTTAAGACATGAAACTGACA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTTTGTAGATGGAAATGTAACATTACTTAAGACATGAAACTGACA  592

seq1  GAATTTTAATATTTTAAATAATGGTTTAGAATTTAAAAAGGAGTACTTCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTAATATTTTAAATAATGGTTTAGAATTTAAAAAGGAGTACTTCT  642

seq1  AAATGAGTTAACAAGGAAGAAATAATTTACCAACCACTTTATTGTATATC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGTTAACAAGGAAGAAATAATTTACCAACCACTTTATTGTATATC  692

seq1  CATACCATCCTGAAATGCCAATGAACTCAGAGACTCGTTGTGTTCCCCAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCATCCTGAAATGCCAATGAACTCAGAGACTCGTTGTGTTCCCCAT  742

seq1  CACTGTATAGTGAAGGATGCTAGTCAAAGGACCCATGGTAAAACAAGAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTATAGTGAAGGATGCTAGTCAAAGGACCCATGGTAAAACAAGAAA  792

seq1  GAGGACCCCTAAATCCTGTGTAAATCCAGTATGCATCCTGCGGTACTGAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACCCCTAAATCCTGTGTAAATCCAGTATGCATCCTGCGGTACTGAC  842

seq1  ACTCCCACACTTTTTGTAAGGATTATTTATGTGAGATCACCTAAAGATGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCACACTTTTTGTAAGGATTATTTATGTGAGATCACCTAAAGATGT  892

seq1  GCTTTAAGAATTGTGAACTAAGCCGGGCGTGGTGGGGCATGCCTTTAATC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAAGAATTGTGAACTAAGCCGGGCGTGGTGGGGCATGCCTTTAATC  942

seq1  CCAGCACTCGGAGGCCGAATCAGGCGGATTTCTGAGTTTGAGACCAGCCG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACTCGGAGGCCGAATCAGGCGGATTTCTGAGTTTGAGACCAGCCG  992

seq1  GGTCTACAAAGTGAATTC  1017
      ||||||||||||||||||
seq2  GGTCTACAAAGTGAATTC  1010


| Home | SequenceCutter | Blast | Download |