BAC Information

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BAC

Clone NameB6Ng01-140O09
Chromosome18 (Build37)
Map Location 62,178,840 - 62,312,355
singlet/doubletdoublet
Overlap genenone
Upstream geneCdx1, Pdgfrb, Csf1r, A630042L21Rik, Slc26a2, Pde6a, EG667279, Ppargc1b, LOC667675, 4933429F08Rik, Csnk1a1, Il17b, Pcyox1l, LOC100042730, Grpel2, Afap1l1, LOC100042738, Ablim3, Sh3tc2
Downstream geneAdrb2, Htr4, Fbxo38, Spink10, EG408198, 2700046A07Rik, Apcdd1, Napg, 9430028L06Rik, 9030411M15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140O09.bB6Ng01-140O09.g
ACCDH939504DH939505
length940483
definitionDH939504|Mus musculus domesticus DNA, BAC clone: B6Ng01-140O09, 5' end.DH939505|Mus musculus domesticus DNA, BAC clone: B6Ng01-140O09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,178,840 - 62,179,771)(62,311,867 - 62,312,355)
sequence
gaattccataagtgatgacaaatataatgagcaaagcaaagcactggctt
caagctcagtcctctttcttacccaaagctctttgcctaggtccgatctt
tcactgctcaaaagtccaagaaattagcaaatagcaaagcatagaagaag
gcagcctagtatccaccaggttttttgaactttctgagaaatggaagcat
caaaacagagccccttcctcatggatagcatcgatggcatccaagcatgt
ccctctcagaacagggaagcaggggcctggccgggtgcaggaaagatgca
cgtgatgcactgtgggatagaatcagggtgttcagcatcgctagacccta
gatggatcggtcccaggagactgtgggtcctctaaagaacagaaacttta
cctgggatgggagcaagggtgtcagggagtgacatcttttatatatatat
atatataattacttattttcctcaattacatttccaatgctatcccaaaa
gtcccctccccccccccaactcccctacccacccattcccatttttttgg
ccctggcgttcccctgtactggggcatataaactttgtgtgtccaatggg
cctctctttccagtgatggccgactaggccatcttttgatacatatgcag
ctagagtcaagagctctggggtactggttagttcataatgttgttgcacc
tacagggttgcagatctctttagctccttggatactttctctaggtcctc
ccttgggggccctgtgatccatccaatagttgactgtgagcatccacttc
tgtgtttgctaggccccggcctagtctcacaagagtccttgcaacaaacg
cttgctagtgtatgcaatggtgtcatcgttggaggctaattatgggatgg
atctctggatatggcagtctttagatggtctatccttttg
ctagtggcctgctgcagattgacagttcgctgatttggagcctgtagggc
aacatgaaatgtcactctgtcaagaacatcagtcaatatttgccatgtaa
gcactgaagagcctaaggcctgaaacatagcactctgtagccgtccatcc
cttccagggaattactgtgctcatagcatgtgcaaggccctgtgctaggt
cccagcaagaggaaagcacaaggttttgataccaaacatgctcatggact
aaaacccacaataacaagaacatggaaagatgagtgtggtaattttagtt
tgtaataatttgcttaaaagatattttgtgatgcattcattcaccttatc
ttatgaacatttaataacttgggacttgggaggtaaaaaaagtactcaac
ctaaaatcaaaagctggagatgaaaccaactgtaaagtctaagatcttaa
aaaggaagaggaggaagagggggagggggagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_62178840_62179771
seq2: B6Ng01-140O09.b_49_979

seq1  GAATTCCATAAGTGATGACAAATATAATGAGCAAAGCAAAGCACTGGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAAGTGATGACAAATATAATGAGCAAAGCAAAGCACTGGCTT  50

seq1  CAAGCTCAGTCCTCTTTCTTACCCAAAGCTCTTTGCCTAGGTCCGATCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTCAGTCCTCTTTCTTACCCAAAGCTCTTTGCCTAGGTCCGATCTT  100

seq1  TCACTGCTCAAAAGTCCAAGAAATTAGCAAATAGCAAAGCATAGAAGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGCTCAAAAGTCCAAGAAATTAGCAAATAGCAAAGCATAGAAGAAG  150

seq1  GCAGCCTAGTATCCACCAGGTTTTTTGAACTTTCTGAGAAATGGAAGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCTAGTATCCACCAGGTTTTTTGAACTTTCTGAGAAATGGAAGCAT  200

seq1  CAAAACAGAGCCCCTTCCTCATGGATAGCATCGATGGCATCCAAGCATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAGAGCCCCTTCCTCATGGATAGCATCGATGGCATCCAAGCATGT  250

seq1  CCCTCTCAGAACAGGGAAGCAGGGGCCTGGCCGGGTGCAGGAAAGATGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTCAGAACAGGGAAGCAGGGGCCTGGCCGGGTGCAGGAAAGATGCA  300

seq1  CGTGATGCACTGTGGGATAGAATCAGGGTGTTCAGCATCGCTAGACCCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGATGCACTGTGGGATAGAATCAGGGTGTTCAGCATCGCTAGACCCTA  350

seq1  GATGGATCGGTCCCAGGAGACTGTGGGTCCTCTAAAGAACAGAAACTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGATCGGTCCCAGGAGACTGTGGGTCCTCTAAAGAACAGAAACTTTA  400

seq1  CCTGGGATGGGAGCAAGGGTGTCAGGGAGTGACATCTTTTATATATATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGATGGGAGCAAGGGTGTCAGGGAGTGACATCTTTTATATATATAT  450

seq1  ATATATAATTACTTATTTTCCTCAATTACATTTCCAATGCTATCCCAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAATTACTTATTTTCCTCAATTACATTTCCAATGCTATCCCAAAA  500

seq1  GTCCCCTCCCCCCCCCCAACTCCCCTACCCACCCATTCCCATTTTTTTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCTCCCCCCCCCCAACTCCCCTACCCACCCATTCCCATTTTTTTGG  550

seq1  CCCTGGCGTTCCCCTGTACTGGGGCATATAAACTTTGTGTGTCCAATGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGCGTTCCCCTGTACTGGGGCATATAAACTTTGTGTGTCCAATGGG  600

seq1  CCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAG  650

seq1  CTAGAGTCAAGAGCTCTGGGGTACTGGTTAGTTCATAATGTTGTTGCACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGTCAAGAGCTCTGGGGTACTGGTTAGTTCATAATGTTGTTGCACC  700

seq1  TACAGGGTTGCAGATCTCTTTAGCTCCTTGGATACTTTCTCTAGGTCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGGTTGCAGATCTCTTTAGCTCCTTGGATACTTTCTCTAGGTCCTC  750

seq1  CCTTGGGGGCCCTGTGATCCATCCAATAGTTGACTGTGAGCATCCACTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGGGGCCCTGTGATCCATCCAATAGTTGACTGTGAGCATCCACTTC  800

seq1  TGTGTTTGCTAGGCCCCGGCCTAGTCTCACAAGAGTCCTTGCAACAAACG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTGCTAGGCCCCGGCCTAGTCTCACAAGAGTCCTTGCAACAAACG  850

seq1  CTTGCTAGTGTATGCAATGGTGTCATCGTTTGGAGGCTAATTATGGGATG  900
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTTGCTAGTGTATGCAATGGTGTCATCG-TTGGAGGCTAATTATGGGATG  899

seq1  GATCTCTGGATATGGCAGTCTCTAGATGGTCT  932
      ||||||||||||||||||||| ||||||||||
seq2  GATCTCTGGATATGGCAGTCTTTAGATGGTCT  931

seq1: chr18_62311867_62312355
seq2: B6Ng01-140O09.g_71_559 (reverse)

seq1  TCCTCCCCCTCCCCCTCTTCCTCCTCTTCCTTTTTAAGATCTTAGACTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCCCTCCCCCTCTTCCTCCTCTTCCTTTTTAAGATCTTAGACTTT  50

seq1  ACAGTTGGTTTCATCTCCAGCTTTTGATTTTAGGTTGAGTACTTTTTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTGGTTTCATCTCCAGCTTTTGATTTTAGGTTGAGTACTTTTTTTA  100

seq1  CCTCCCAAGTCCCAAGTTATTAAATGTTCATAAGATAAGGTGAATGAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCAAGTCCCAAGTTATTAAATGTTCATAAGATAAGGTGAATGAATG  150

seq1  CATCACAAAATATCTTTTAAGCAAATTATTACAAACTAAAATTACCACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACAAAATATCTTTTAAGCAAATTATTACAAACTAAAATTACCACAC  200

seq1  TCATCTTTCCATGTTCTTGTTATTGTGGGTTTTAGTCCATGAGCATGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTTCCATGTTCTTGTTATTGTGGGTTTTAGTCCATGAGCATGTTT  250

seq1  GGTATCAAAACCTTGTGCTTTCCTCTTGCTGGGACCTAGCACAGGGCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCAAAACCTTGTGCTTTCCTCTTGCTGGGACCTAGCACAGGGCCTT  300

seq1  GCACATGCTATGAGCACAGTAATTCCCTGGAAGGGATGGACGGCTACAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATGCTATGAGCACAGTAATTCCCTGGAAGGGATGGACGGCTACAGA  350

seq1  GTGCTATGTTTCAGGCCTTAGGCTCTTCAGTGCTTACATGGCAAATATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTATGTTTCAGGCCTTAGGCTCTTCAGTGCTTACATGGCAAATATTG  400

seq1  ACTGATGTTCTTGACAGAGTGACATTTCATGTTGCCCTACAGGCTCCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATGTTCTTGACAGAGTGACATTTCATGTTGCCCTACAGGCTCCAAA  450

seq1  TCAGCGAACTGTCAATCTGCAGCAGGCCACTAGGAATTC  489
      |||||||||||||||||||||||||||||||||||||||
seq2  TCAGCGAACTGTCAATCTGCAGCAGGCCACTAGGAATTC  489