BAC Information

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BAC

Clone NameB6Ng01-141G22
Chromosome18 (Build37)
Map Location 50,110,005 - 50,110,977
singlet/doubletsinglet
Overlap geneDmxl1
Upstream geneDtwd2
Downstream geneTnfaip8, Hsd17b4, LOC626721, LOC667233, Gm93, Hdhd1a, LOC100042373
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141G22.b
ACCDH939893
length1,071
definitionDH939893|Mus musculus domesticus DNA, BAC clone: B6Ng01-141G22, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttaagattaaagatagtgtttgggactaggaatgcattttagtg
ggtttataccccgccttttttttcatgtcctgatttaaatcctcatgact
gcttatttccctgatatggaatctgcctcttgtaattcttgaattgccac
cagagaggaaaatcgtaatttcctggccatccttgccttcatacgaattc
tgacgcccacttgagctagagttcttaatctacgtgtgtgtatgacaaaa
attacatatttattttaaaaagttttgagaaaatttatttaacgcaatct
agaattatttagcagagttatacctaggaaataaatcaatccatttatgt
aaatttcccttttatttttcatttcatacaacaaaaataatatgtacttc
catttgaatgcgagcatgtctttaaacaaaacagtagaaacatgtatatt
agaaacatgtctataaattaagattgttctcaaaattatcttaatgtctt
aataccctaaaataatttttatatttataattattgtaattattaaaaaa
taaacctttatcagttatactattaatgtttaaatttatgtttttctcag
gaaaagacatgttaaaggtggtcttgaatgacatattaaagaaaatttca
tttttaagttattctgactggctgttatctcaaatatatgctaatgactc
tgataatactaattattataaagattaataatatcagtaggtagttttga
taatgagcactcagaactatacaaatgtcacccaaattgtattaaatcat
aactcagaattagtgtggtatagggaataatgaaatcaatacatataaaa
taacccagcatgctgctaattatactaataagttgagttttataattcct
tcatcaaatactaagtttacaatgaattcagactattttagaatgtttgc
tgtgcactgggcagggctgaaagggcagcacttatggccttgacactagt
agaagaaatgctctcttcttccaatggttaattatttctatatatttatg
gggggtgacctgcattatatt
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_50110005_50110977
seq2: B6Ng01-141G22.b_142_1111 (reverse)

seq1  AATATATATGCAGGTCAAACACCCATAAATATAAAAGAAAATAATTAAGA  50
      |||||| ||||||||| | | |||||||||||| |   |||||||||  |
seq2  AATATA-ATGCAGGTC-ACCCCCCATAAATATATA--GAAATAATTA--A  44

seq1  CCATGGGAAGAAGAGAGCATCTCTTCTAGCTAGTGTCAAGGCATTATGCT  100
      |||| ||||||||||||||| ||||||| |||||||||||||  || | |
seq2  CCATTGGAAGAAGAGAGCATTTCTTCTA-CTAGTGTCAAGGCCATAAG-T  92

seq1  GCTGCCCTCTCAGCCCTGCCCAGTGCACAGCAAACATTCTAAAATAGTCT  150
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCCTTTCAGCCCTGCCCAGTGCACAGCAAACATTCTAAAATAGTCT  142

seq1  GAATTCATT-TAAACTAAGTATTTGATGAAGAATTAATAAAACTCAAC-T  198
      ||||||||| |||||| |||||||||||||| | | |||||||||||| |
seq2  GAATTCATTGTAAACTTAGTATTTGATGAAGGAATTATAAAACTCAACTT  192

seq1  AATAGTAT-ATTAGCAGCATGCTGGG-TATTTTATATGTATTGATTTTCA  246
      | |||||| ||||||||||||||||| ||||||||||||||||| |||||
seq2  ATTAGTATAATTAGCAGCATGCTGGGTTATTTTATATGTATTGA-TTTCA  241

seq1  TTATT-CCTATACCACACTAATTCTGAGTTATGA-TTAATACAATTTGGG  294
      ||||| |||||||||||||||||||||||||||| |||||||||||||||
seq2  TTATTCCCTATACCACACTAATTCTGAGTTATGATTTAATACAATTTGGG  291

seq1  TGACATTTGTATAGTTCTGAGTGCTCATTATCAAAACTACCTACTGATAT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATTTGTATAGTTCTGAGTGCTCATTATCAAAACTACCTACTGATAT  341

seq1  TATTAATCTTTATAATAATTAGTATTATCAGAGTCATTAGCATATATTTG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATCTTTATAATAATTAGTATTATCAGAGTCATTAGCATATATTTG  391

seq1  AGATAACAGCCAGTCAGAATAACTTAAAAATGAAATTTTCTTTAATATGT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAACAGCCAGTCAGAATAACTTAAAAATGAAATTTTCTTTAATATGT  441

seq1  CATTCAAGACCACCTTTAACATGTCTTTTCCTGAGAAAAACATAAATTTA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAAGACCACCTTTAACATGTCTTTTCCTGAGAAAAACATAAATTTA  491

seq1  AACATTAATAGTATAACTGATAAAGGTTTATTTTTTAATAATTACAATAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTAATAGTATAACTGATAAAGGTTTATTTTTTAATAATTACAATAA  541

seq1  TTATAAATATAAAAATTATTTTAGGGTATTAAGACATTAAGATAATTTTG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAATATAAAAATTATTTTAGGGTATTAAGACATTAAGATAATTTTG  591

seq1  AGAACAATCTTAATTTATAGACATGTTTCTAATATACATGTTTCTACTGT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAATCTTAATTTATAGACATGTTTCTAATATACATGTTTCTACTGT  641

seq1  TTTGTTTAAAGACATGCTCGCATTCAAATGGAAGTACATATTATTTTTGT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTAAAGACATGCTCGCATTCAAATGGAAGTACATATTATTTTTGT  691

seq1  TGTATGAAATGAAAAATAAAAGGGAAATTTACATAAATGGATTGATTTAT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGAAATGAAAAATAAAAGGGAAATTTACATAAATGGATTGATTTAT  741

seq1  TTCCTAGGTATAACTCTGCTAAATAATTCTAGATTGCGTTAAATAAATTT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAGGTATAACTCTGCTAAATAATTCTAGATTGCGTTAAATAAATTT  791

seq1  TCTCAAAACTTTTTAAAATAAATATGTAATTTTTGTCATCTTATAATGCA  844
      |||||||||||||||||||||||||||||||||||||||      | | |
seq2  TCTCAAAACTTTTTAAAATAAATATGTAATTTTTGTCATACACACACGTA  841

seq1  GAT--CTGACCGGAGCTCAAGATGGAAGTGTCAGAAT--GTTTGAATGGG  890
      |||     ||   |||||||| |||  | ||||||||  || |||| |  
seq2  GATTAAGAACTCTAGCTCAAG-TGG--GCGTCAGAATTCGTATGAAGGCA  888

seq1  GCCATTCTCAGCAAATAACCTGTTTTCGGTCTGGTGGCAATTCAAGAATT  940
         ||   ||| |||| ||   ||| |  |||||||||||||||||||||
seq2  AGGATGGCCAGGAAATTACGATTTTCCTCTCTGGTGGCAATTCAAGAATT  938

seq1  ACAAGAATGAGATTTAACTATCAGGGAAATAAG  973
      ||||||   |||||  | |||||||||||||||
seq2  ACAAGAGGCAGATTCCA-TATCAGGGAAATAAG  970