BAC Information

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BAC

Clone NameB6Ng01-141H02
Chromosome13 (Build37)18 (Build37)
Map Location 97,856,566 - 97,857,32255,325,133 - 55,325,736
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSv2c, LOC667582, 1200014M14Rik, 9330128J19Rik, Polk, Col4a3bp, Hmgcr, LOC100039456, LOC625662, 1700029F12Rik
Downstream geneEG620648, 5730427N09Rik, LOC100039663, Gfm2, Hexb, Enc1, LOC667676, LOC100039691, LOC100039704, EG328314, LOC100039526, LOC100039740, Rgnef
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141H02.bB6Ng01-141H02.g
ACCDH939900DH939901
length769921
definitionDH939900|Mus musculus domesticus DNA, BAC clone: B6Ng01-141H02, 5' end.DH939901|Mus musculus domesticus DNA, BAC clone: B6Ng01-141H02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(97,856,566 - 97,857,322)(55,325,133 - 55,325,736)
sequence
gaattcagtcagtttggctcctgggcacatagcatgagccagtgtaccca
cctagcatacaaaatacctcttctttcttgtttaaatcatttttcccccc
aagaatttttctggacatgaagagagaattaaacctttagttagaatatt
tctaaaaatacttttgcgaagagtatttatatttaagactttcctgatag
atactcttagggtccccaacattatctgtgtttttagaaatgttcgccgc
tgtcatcaaaagagcagacattgactagagtcagttacctctgctgctta
ctagttgtatgcccttgaaaaggaaattgtgtttttactttatctgtcaa
atgaatgtatgatatgtactatagggtttgcaatacaaatattggaggga
gcaggtataaatcttatttaagatcttaaccatcaggctggagagatgca
tcgctcagcagttaagggcactgactgctcttccagaggtcatgagttca
aatcccagcaaccacatggtggctcacaaccatctgtaatggggtctgat
gccctcttctggtgtgtctgaagacagctacagtgtactcataaaatgaa
ataaataaatcttttaaaaataaaacccttaaccatccacctacaaaact
caaaggtggggccttacccaactgtaagcaaatctttttacagggactag
aaagggcttggctgagcactgcccgaggaccacgtagttttggggtagat
agcacctttttcagttatg
gaattctcttttcttattgtaaattattgaagaacagtggaaaccagtgg
tatccctgtctctctgggctgtcttggttttgctggctacattccacagc
atccattaactatatgttgacttggggtttgaaggtcaagatgacttcta
caaccagagcctgtgttacgagacatatgctaacccttatctttcgatgg
acctttatcattatttacaactagtatggagcacaaatcttcaagtgaca
cacagagactaatttaatatttaaacacaattaacttcttattgtgtggg
tggggggatgggtttcacaagacaaaaagacttctagtagtttgcattat
ataaacacaagataaagacttctcagaagaatcacctctgaaggccaggt
gtgatgacgttgtatgcaatcccaacatttgggagattgtgaaaagagga
ttgtgagcctcaggccaggctgagctatataatgctttcacagctagctt
gatctatacaatgagagtatctcaaaatgttgctaaagtattgacaaatt
aagattaggttgcattgcttcattaagataggtctatcataggattccac
tagactgcccctcctgagcatgaacttggatagtatcttagggtttatgc
tgtgaagagacatgaccaaggcaactcataaaggacaacatttaactggg
gctggttttacagtttcagaggtttagtccatcatcattgtggtgggaat
tatggcaacatgcagactgaccagtcccttgaggatctgagaatctagat
ctttgattcaaaggcaactagggagaaccctgtcatcagctgatagctag
gacgaggggctctttctatctggatgagcttaagcatagaacaccaatgc
ctagccccccgtgatgcactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_97856566_97857322
seq2: B6Ng01-141H02.b_43_810

seq1  GAATTCAGTCAGTTTGGCTCCTGGGCACATAGCATTAGCCAGTGTAGCCA  50
      ||||||||||||||||||||||||||||||||||| |||||||||| |||
seq2  GAATTCAGTCAGTTTGGCTCCTGGGCACATAGCATGAGCCAGTGTACCCA  50

seq1  CATAGCATACAAAATACCAGTTCTTTCATGTTTAAATCATTTTTCCCCCC  100
      | ||||||||||||||||  ||||||| ||||||||||||||||||||||
seq2  CCTAGCATACAAAATACCTCTTCTTTCTTGTTTAAATCATTTTTCCCCCC  100

seq1  AAGAATTTTTCTGGACATGAAGAGAGAATTAAACCTTTAGTTAGAATATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTTTTCTGGACATGAAGAGAGAATTAAACCTTTAGTTAGAATATT  150

seq1  TCTAAAAATACTTTTGCGAAGAGTATTTATATTTAAGACTTTCCTGATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAAATACTTTTGCGAAGAGTATTTATATTTAAGACTTTCCTGATAG  200

seq1  ATACTCTTAGGGTCCCCAACATTATCTGTGTTTTTAGAAATGTTCGCCGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCTTAGGGTCCCCAACATTATCTGTGTTTTTAGAAATGTTCGCCGC  250

seq1  TGTCATCAAAAGAGCAGACATTGACTAGAGTCAGTTACCTCTGCTGCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATCAAAAGAGCAGACATTGACTAGAGTCAGTTACCTCTGCTGCTTA  300

seq1  CTAGTTGTATGCCCTTGAAAAGGAAATTGTGTTTTTACTTTATCTGTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTGTATGCCCTTGAAAAGGAAATTGTGTTTTTACTTTATCTGTCAA  350

seq1  ATGAATGTATGATATGTACTATAGGGTTTGCAATACAAATATTGGAGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGTATGATATGTACTATAGGGTTTGCAATACAAATATTGGAGGGA  400

seq1  GCAGGTATAAATCTTATTTAAGATCTTAACCATCAGGCTGGAGAGATGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTATAAATCTTATTTAAGATCTTAACCATCAGGCTGGAGAGATGCA  450

seq1  TCGCTCAGCAGTTAAGGGCACTGACTGCTCTTCCAGAGGTCATGAGTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTCAGCAGTTAAGGGCACTGACTGCTCTTCCAGAGGTCATGAGTTCA  500

seq1  AATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGGTCTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGGTCTGAT  550

seq1  GCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTCAT-AAATGAA  599
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTCATAAAATGAA  600

seq1  ATAAATAAATC-TTTAAAAAT-AAACCCTTAACCATCCACCTAC-AAACT  646
      ||||||||||| ||||||||| |||||||||||||||||||||| |||||
seq2  ATAAATAAATCTTTTAAAAATAAAACCCTTAACCATCCACCTACAAAACT  650

seq1  CAGAGGT-GGGCCTTACCCAACTGTAAGCAAATC-TTTTACAGGGACTAG  694
      || |||| |||||||||||||||||||||||||| |||||||||||||||
seq2  CAAAGGTGGGGCCTTACCCAACTGTAAGCAAATCTTTTTACAGGGACTAG  700

seq1  AAAGGGCTT-GCTGAGCACTG-CCGAGGACCACGTAGTTTT-GGGTAG-T  740
      ||||||||| ||||||||||| ||||||||||||||||||| |||||| |
seq2  AAAGGGCTTGGCTGAGCACTGCCCGAGGACCACGTAGTTTTGGGGTAGAT  750

seq1  AGTAGC-TTTTCAGTTAT  757
      || | | |||||||||||
seq2  AGCACCTTTTTCAGTTAT  768

seq1: chr18_55325133_55325736
seq2: B6Ng01-141H02.g_381_986

seq1  CACAAGACAAAAAGACTTCTAGTAGTTTGCATTATATAAACACAAGATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGACAAAAAGACTTCTAGTAGTTTGCATTATATAAACACAAGATAA  50

seq1  AGACTTCTCAGAAGAATCACCTCTGAAGGCCAGGTGTGATGACGTTGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTCTCAGAAGAATCACCTCTGAAGGCCAGGTGTGATGACGTTGTAT  100

seq1  GCAATCCCAACATTTGGGAGATTGTGAAAAGAGGATTGTGAGCCTCAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCCCAACATTTGGGAGATTGTGAAAAGAGGATTGTGAGCCTCAGGC  150

seq1  CAGGCTGAGCTATATAATGCTTTCACAGCTAGCTTGATCTATACAATGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGAGCTATATAATGCTTTCACAGCTAGCTTGATCTATACAATGAG  200

seq1  AGTATCTCAAAATGTTGCTAAAGTATTGACAAATTAAGATTAGGTTGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCTCAAAATGTTGCTAAAGTATTGACAAATTAAGATTAGGTTGCAT  250

seq1  TGCTTCATTAAGATAGGTCTATCATAGGATTCCACTAGACTGCCCCTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCATTAAGATAGGTCTATCATAGGATTCCACTAGACTGCCCCTCCT  300

seq1  GAGCATGAACTTGGATAGTATCTTAGGGTTTATGCTGTGAAGAGACATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATGAACTTGGATAGTATCTTAGGGTTTATGCTGTGAAGAGACATGA  350

seq1  CCAAGGCAACTCATAAAGGACAACATTTAACTGGGGCTGG-TTTACAGTT  399
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CCAAGGCAACTCATAAAGGACAACATTTAACTGGGGCTGGTTTTACAGTT  400

seq1  TCAGAGGTTTAGTCCATCATCATTGTGGTGGGAATCATGGCAACATGCAG  449
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TCAGAGGTTTAGTCCATCATCATTGTGGTGGGAATTATGGCAACATGCAG  450

seq1  ACTGACCAGT-CCTTGAGGATCTGAGAATTCTAGATC-TTGATTCAAAGG  497
      |||||||||| ||||||||||||||||| |||||||| ||||||||||||
seq2  ACTGACCAGTCCCTTGAGGATCTGAGAA-TCTAGATCTTTGATTCAAAGG  499

seq1  CAACCA-GGAGAACCCTGTCATCAGCTGATAGCCAGGACGAGGGGCTC-T  545
      |||| | |||||||||||||||||||||||||| |||||||||||||| |
seq2  CAACTAGGGAGAACCCTGTCATCAGCTGATAGCTAGGACGAGGGGCTCTT  549

seq1  TCCATCTGGATGGAGCTTAAGCATAGAACACCAATGCCTAGCCCCACAGT  595
      || |||||||| ||||||||||||||||||||||||||||||||| | ||
seq2  TCTATCTGGAT-GAGCTTAAGCATAGAACACCAATGCCTAGCCCC-CCGT  597

seq1  GATGCACTT  604
      |||||||||
seq2  GATGCACTT  606