BAC Information

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BAC

Clone NameB6Ng01-141J18
Chromosome18 (Build37)
Map Location 11,641,871 - 11,831,428
singlet/doubletdoublet
Overlap geneLOC665310, LOC100040148, Rbbp8
Upstream geneLOC100039880, Abhd3, Mib1, LOC665296, 1010001N08Rik, Gata6
Downstream geneLOC621998, Cables1, 6030446N20Rik, Riok3, 3110002H16Rik, Npc1, Ankrd29, Lama3, 2810439F02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141J18.bB6Ng01-141J18.g
ACCDH940026DH940027
length1,165922
definitionDH940026|Mus musculus domesticus DNA, BAC clone: B6Ng01-141J18, 5' end.DH940027|Mus musculus domesticus DNA, BAC clone: B6Ng01-141J18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,830,229 - 11,831,428)(11,641,871 - 11,642,792)
sequence
gaattcatatcccagagaaaagaatgataaacacaaacagttctcatttc
actaaatattctataaaaagatgattttatattataatatatagtaaaat
atacatgtgcatgttaactaagtctgtacttagaaatcaggcattctttt
ttattttaaaacattttaaaaaatcacaattagctcaaagctaatttatt
tttaactaagacataaggctttttaaaaaatgagactggctatcactatc
aattaattaataaataagacataggtattacatactgatacttacaaaat
tcgttcctttttcagtttggttactttgacttgtaaacctgcaaagtaaa
gcacagtgttttgttacacattgtgccaattctaaagcagttaaccacgt
ccctgtatgaggcgaatgctactctattaagccaatttagactagcttct
gaataatgaaccaagttgcatttgatgtacagtgtattccccttacttgt
accctcaggctatgaaaataaatctgcagcattattgcttttagtctatt
atatgacagccaagtagattaaaagtgagttatttcctttctaatagaga
gcaaacatataattatcagttcactataaactctgtgttctgacacagcc
aatatatttgccaacagtaatagcacctatgtaggctcaaatctctgggg
attaaactagattgtggcaggaacaaagctaagaaacaaagttgcttcta
gaaaagtacttggggctggttaagagcactgactcttcttcctgagatcc
taacttcaattcccagcaaccacatggtggctcacaaccatctgtaatgg
gattcgatgccctcttccgtgtgtctgaagacagctacagtgtgctcata
tacataaaataaataaaatcttaataaaaaaagtacttaaaaaaggacac
tagggggctggagagatgctcagcaggtagagcactgactgctcttccga
aggtcctgagttcaaatccagcacacaggtagcttacaaccatcctaatg
aaatctgactccctcttctggggtgcttgaagacagctccgttacttact
ataatataataaatcttttttagaaaaagaactaggatttactcttgaca
tgtattcgttaatta
gaattctgggggaacacagcaaccacatggtggttcataaatgtactccc
ataagacctgactccctttcctggcctgcagagatacatgccagtgtaag
tacacaaaacacctgtacacagaaattaagcaaatattttttaagagaag
aaaatgaaaattaatcatgacttgagtattagctgtcttttatttgtcca
ttcagtcatcttctcttgcagctaggggcaaccaatgagacacaagcaca
cgtgtattttttaaacaatgcattcaactgtcagagacaaaattggcacc
ttcttgtctcaatctagtatcaagctgctgcatttagcaattaaaaataa
aggttgcttaaagcctggcatggtggggcacgcctttaatcctagcactt
gggaagcagaggcaggcgggtctctgtgaattcgagaccggcctgatcta
cagaatgagttctaggatagccagagctaagtagagagagcctgtctcaa
aagaacaaaaaagtaaataaataaaggtggtctagttatatttgaatttc
aggtgagcagtacttttagcataaacatgcacatagttttgaacatgcta
atataaaaaagtaacttgttgctatctaaaatccatttttaactggaaaa
ccagtcctttatctattttatcacatgtctaaaagggctgcatgaggact
acagtagccgcacaaagagaactcaaagccaagcaaaggcccaatactgg
gcaatctagttatagcagacccaggagcacaacatgggacccaggcactt
atttatcttctctgagccactgtgattagaactggatacagctaagcaaa
ctgctaacctgcaggcttcactttcacattctgggtttgttgggtgcttg
gatgtggttggatgggtggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_11830229_11831428
seq2: B6Ng01-141J18.b_48_1212 (reverse)

seq1  TAATTAAAACTGAAAAATACATATGTCTAGAGTTAAAAATCCTAGTGTCC  50
      ||||||      |  |||||  ||||| |||||   |||||||||     
seq2  TAATTA------ACGAATAC--ATGTCAAGAGT---AAATCCTAG-----  34

seq1  TTTTTTTTTAAAAAAAAGATTTATTTATTTATTATATGTAAGTACACTGT  100
       || |||||  |||||||||||||   | ||||||| ||||||| || | 
seq2  -TTCTTTTTCTAAAAAAGATTTAT---TATATTATA-GTAAGTA-AC-GG  77

seq1  AGCTGTCTTCAGACACACCAGAAGAGGGAGTCAGATCTCATTAGGGATGG  150
      |||||||||||  ||| ||||||||||||||||||| |||||| ||||||
seq2  AGCTGTCTTCAAGCACCCCAGAAGAGGGAGTCAGATTTCATTA-GGATGG  126

seq1  TTGTGAGCTACCCTGTGGTTGCTGGGATTTGAACTCAGGACCTTCGGAAG  200
      |||| ||||| ||||||  |||| ||||||||||||||||||||||||||
seq2  TTGTAAGCTA-CCTGTG--TGCT-GGATTTGAACTCAGGACCTTCGGAAG  172

seq1  AGCAGTCAGGTGCTCTTACCTGCTGAGCCATCTCTCCAGCCCCCCTAGTG  250
      |||||||| |||||| ||||||||||| ||||||||||| ||||||||||
seq2  AGCAGTCA-GTGCTC-TACCTGCTGAG-CATCTCTCCAG-CCCCCTAGTG  218

seq1  TCCTTTTTTAAGTACTTTTTTTTATTTAAGATTTTATTTATTTTTATGTA  300
      ||||||||||||||||||||||   ||||||||||||||| |||||||||
seq2  TCCTTTTTTAAGTACTTTTTTT--ATTAAGATTTTATTTA-TTTTATGTA  265

seq1  TATGAGCACACTGTAGCTGTCTTCAGACACACGGAAGAGGGCATCGAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGCACACTGTAGCTGTCTTCAGACACACGGAAGAGGGCATCGAATC  315

seq1  CCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAAGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAAGTTA  365

seq1  GGATCTCAGGAAGAAGAGTCAGTGCTCTTAACCAGCCCCAAGTACTTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTCAGGAAGAAGAGTCAGTGCTCTTAACCAGCCCCAAGTACTTTTC  415

seq1  TAGAAGCAACTTTGTTTCTTAGCTTTGTTCCTGCCACAATCTAGTTTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGCAACTTTGTTTCTTAGCTTTGTTCCTGCCACAATCTAGTTTAAT  465

seq1  CCCCAGAGATTTGAGCCTACATAGGTGCTATTACTGTTGGCAAATATATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGAGATTTGAGCCTACATAGGTGCTATTACTGTTGGCAAATATATT  515

seq1  GGCTGTGTCAGAACACAGAGTTTATAGTGAACTGATAATTATATGTTTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTGTCAGAACACAGAGTTTATAGTGAACTGATAATTATATGTTTGC  565

seq1  TCTCTATTAGAAAGGAAATAACTCACTTTTAATCTACTTGGCTGTCATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATTAGAAAGGAAATAACTCACTTTTAATCTACTTGGCTGTCATAT  615

seq1  AATAGACTAAAAGCAATAATGCTGCAGATTTATTTTCATAGCCTGAGGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGACTAAAAGCAATAATGCTGCAGATTTATTTTCATAGCCTGAGGGT  665

seq1  ACAAGTAAGGGGAATACACTGTACATCAAATGCAACTTGGTTCATTATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTAAGGGGAATACACTGTACATCAAATGCAACTTGGTTCATTATTC  715

seq1  AGAAGCTAGTCTAAATTGGCTTAATAGAGTAGCATTCGCCTCATACAGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTAGTCTAAATTGGCTTAATAGAGTAGCATTCGCCTCATACAGGG  765

seq1  ACGTGGTTAACTGCTTTAGAATTGGCACAATGTGTAACAAAACACTGTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGGTTAACTGCTTTAGAATTGGCACAATGTGTAACAAAACACTGTGC  815

seq1  TTTACTTTGCAGGTTTACAAGTCAAAGTAACCAAACTGAAAAAGGAACGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTTGCAGGTTTACAAGTCAAAGTAACCAAACTGAAAAAGGAACGA  865

seq1  ATTTTGTAAGTATCAGTATGTAATACCTATGTCTTATTTATTAATTAATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTAAGTATCAGTATGTAATACCTATGTCTTATTTATTAATTAATT  915

seq1  GATAGTGATAGCCAGTCTCATTTTTTAAAAAGCCTTATGTCTTAGTTAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTGATAGCCAGTCTCATTTTTTAAAAAGCCTTATGTCTTAGTTAAA  965

seq1  AATAAATTAGCTTTGAGCTAATTGTGATTTTTTAAAATGTTTTAAAATAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATTAGCTTTGAGCTAATTGTGATTTTTTAAAATGTTTTAAAATAA  1015

seq1  AAAAGAATGCCTGATTTCTAAGTACAGACTTAGTTAACATGCACATGTAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAATGCCTGATTTCTAAGTACAGACTTAGTTAACATGCACATGTAT  1065

seq1  ATTTTACTATATATTATAATATAAAATCATCTTTTTATAGAATATTTAGT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACTATATATTATAATATAAAATCATCTTTTTATAGAATATTTAGT  1115

seq1  GAAATGAGAACTGTTTGTGTTTATCATTCTTTTCTCTGGGATATGAATTC  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGAGAACTGTTTGTGTTTATCATTCTTTTCTCTGGGATATGAATTC  1165

seq1: chr18_11641871_11642792
seq2: B6Ng01-141J18.g_67_988

seq1  GAATTCTGGGGGAACACAGCAACCACATGGTGGTTCATAAATGTACTCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGGGAACACAGCAACCACATGGTGGTTCATAAATGTACTCCC  50

seq1  ATAAGACCTGACTCCCTTTCCTGGCCTGCAGAGATACATGCCAGTGTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGACCTGACTCCCTTTCCTGGCCTGCAGAGATACATGCCAGTGTAAG  100

seq1  TACACAAAACACCTGTACACAGAAATTAAGCAAATATTTTTTAAGAGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAAAACACCTGTACACAGAAATTAAGCAAATATTTTTTAAGAGAAG  150

seq1  AAAATGAAAATTAATCATGACTTGAGTATTAGCTGTCTTTTATTTGTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAAAATTAATCATGACTTGAGTATTAGCTGTCTTTTATTTGTCCA  200

seq1  TTCAGTCATCTTCTCTTGCAGCTAGGGGCAACCAATGAGACACAAGCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTCATCTTCTCTTGCAGCTAGGGGCAACCAATGAGACACAAGCACA  250

seq1  CGTGTATTTTTTAAACAATGCATTCAACTGTCAGAGACAAAATTGGCACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTATTTTTTAAACAATGCATTCAACTGTCAGAGACAAAATTGGCACC  300

seq1  TTCTTGTCTCAATCTAGTATCAAGCTGCTGCATTTAGCAATTAAAAATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTCTCAATCTAGTATCAAGCTGCTGCATTTAGCAATTAAAAATAA  350

seq1  AGGTTGCTTAAAGCCTGGCATGGTGGGGCACGCCTTTAATCCTAGCACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGCTTAAAGCCTGGCATGGTGGGGCACGCCTTTAATCCTAGCACTT  400

seq1  GGGAAGCAGAGGCAGGCGGGTCTCTGTGAATTCGAGACCGGCCTGATCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGCAGAGGCAGGCGGGTCTCTGTGAATTCGAGACCGGCCTGATCTA  450

seq1  CAGAATGAGTTCTAGGATAGCCAGAGCTAAGTAGAGAGAGCCTGTCTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGAGTTCTAGGATAGCCAGAGCTAAGTAGAGAGAGCCTGTCTCAA  500

seq1  AAGAACAAAAAAGTAAATAAATAAAGGTGGTCTAGTTATATTTGAATTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACAAAAAAGTAAATAAATAAAGGTGGTCTAGTTATATTTGAATTTC  550

seq1  AGGTGAGCAGTACTTTTAGCATAAACATGCACATAGTTTTGAACATGCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAGCAGTACTTTTAGCATAAACATGCACATAGTTTTGAACATGCTA  600

seq1  ATATAAAAAAGTAACTTGTTGCTATCTAAAATCCATTTTTAACTGGAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAAAAGTAACTTGTTGCTATCTAAAATCCATTTTTAACTGGAAAA  650

seq1  CCAGTCCTTTATCTATTTTATCACATGTCTAAAAGGGCTGCATGAGGACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCCTTTATCTATTTTATCACATGTCTAAAAGGGCTGCATGAGGACT  700

seq1  ACAGTAGCCGCACAAAGAGAACTCAAAGCCAAGCAAAGGCCCAATACTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAGCCGCACAAAGAGAACTCAAAGCCAAGCAAAGGCCCAATACTGG  750

seq1  GCAATCTAGTTATAGCAGACCCAGGAGCACAACATGGGACCCAGGCACTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCTAGTTATAGCAGACCCAGGAGCACAACATGGGACCCAGGCACTT  800

seq1  ATTTATCTTCTCTGAGCCACTGTGATTAGAACTGGATACAGCTAAGCAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATCTTCTCTGAGCCACTGTGATTAGAACTGGATACAGCTAAGCAAA  850

seq1  CTGCTAACCTGCAGGCTTCACTTTCACATTCTGGGTTTGTTGGTTGCTTG  900
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTGCTAACCTGCAGGCTTCACTTTCACATTCTGGGTTTGTTGGGTGCTTG  900

seq1  GATGTGGTTGGATGGTTGGTTG  922
      ||||||||||||||| |||| |
seq2  GATGTGGTTGGATGGGTGGTGG  922