BAC Information

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BAC

Clone NameB6Ng01-141K14
Chromosome18 (Build37)
Map Location 27,082,671 - 27,174,771
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041274
Downstream geneEG665977, EG665646
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141K14.bB6Ng01-141K14.g
ACCDH940062DH940063
length1,0641,018
definitionDH940062|Mus musculus domesticus DNA, BAC clone: B6Ng01-141K14, 5' end.DH940063|Mus musculus domesticus DNA, BAC clone: B6Ng01-141K14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,082,671 - 27,083,746)(27,173,738 - 27,174,771)
sequence
gaattcctcactcataattgcactttccatatcatacttccctaagcatg
tcctcccattttctcccaatttaatctttcacagagggtcatagcatcaa
acaatatctcacacagaaatacaaaagaagacatggatagatgctctgag
aacattacctgctaggtttcccttcctgaactcgtccttcttacttctgc
tttcatgtttgtgttggtagctgttctccccacctaggagtttagttttg
ctacaagaatagctcctctataaggacgaaaatgggaggagcacaagcac
aagttgttattgtagctttgaactaagaaatcctcctgcttcctttttat
gaaatgtattaaacttcctaatggagaagtcagagtacacatatacacat
gcctaatgaactctagtatcacgggtagcagagaaattactagagacgtt
ctataagaatctgaaagagtcttacattcaattatttttctatttactat
gtgataagaaatagaagaatatatatatatatacatatatcatatatata
tacatatatcatatatatatgatacaggaaaagggagggcaagcctaatt
ctagatgtgaagaacagtttcaattgtttactttggtaatatttaaaatc
ataagagtggtggaactctgggcatgttgtggtggatcatcttgataagt
gtatgtaagataggacgatatgcccattctgggtggtaccataccctact
cttggatcatagactgtatcgaaagatagtatgagctaatcatgggcatc
aagttctctttacttcttgaacatgcaagccgtgtgatctgttgtgccaa
actcttctactatgggctgtgtcctcaatctatgaactaggaataatctt
tctatgtttttcagggtacctttgtatcaaaagataaacaacaagacact
ggaataaaacaaatactattaactaatacttgtatatagctaattttacc
cattgcagtatttttcatttatacctggacaatataatcatgtagcatta
ttaatttcatttag
gaattcattctcatgcaagaaaggttttccctttattaatgaatacttta
atccttaaaatatcactctgaattagtcatacatgactactttcattttg
tttcaaaattaaaaataaaatgtatattctaactaaagttaaccctttct
gattttctttggaacaaagaaactccagtgttattaatagtctggccatg
ggctttacactggaagccttaaattggtcatagctttcaggacaagtgtt
ctatcccccttccttatgtgtatattagtatctatatattttcattgcca
tatcatttattcgttttatatccatttgtcattaatgttcatttgcaata
acaagggctactaaaatggaaaaatctgcacatggaaaaaaaggttttgt
cataagggcacttaagataaagtaacaaaaactttaacccaaagagtacc
attaaatctatatccagatacatgaagctaatttagaggcagaaggaaag
ctataagaaaggaaaacatatgatatttcattttagtgatttgattttag
aaaatgccatggaagcagatcagaaaggaataggatagccgagaaatgga
gtcagtcaactggggtttcttctggtgtatgttcttcttagaacccacct
tctgatatgtatgtcactgctctgaactgtcctgagcattggagtccttc
tctaactcacaatgagtaagggagttttgattgaaacactggatgcatat
ttacatcggtctttaattctgtgatcacagttcaacaaaatcacggatag
agctacaggtgaacatttttattatgcaaggggttgtaacaagtctattc
caataaataaaatgctcaattaaaacatttccctgatactgattttaaca
tattgtatatcctgtgatatactatgtaaatatatattacacaagtgaaa
tggggatgaaagaaacgcagtctgtgactaccatgcatctgttgatagat
ttaaagggtaagcttctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_27082671_27083746
seq2: B6Ng01-141K14.b_45_1108

seq1  GAATTCCTCACTCATAATTGCACTTTCCATATCATACTTCCCTAAGCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCACTCATAATTGCACTTTCCATATCATACTTCCCTAAGCATG  50

seq1  TCCTCCCATTTTCTCCCAATTTAATCTTTCACAGAGGGTCATAGCATCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCATTTTCTCCCAATTTAATCTTTCACAGAGGGTCATAGCATCAA  100

seq1  ACAATATCTCACACAGAAATACAAAAGAAGACATGGATAGATGCTCTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATATCTCACACAGAAATACAAAAGAAGACATGGATAGATGCTCTGAG  150

seq1  AACATTACCTGCTAGGTTTCCCTTCCTGAACTCGTCCTTCTTACTTCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTACCTGCTAGGTTTCCCTTCCTGAACTCGTCCTTCTTACTTCTGC  200

seq1  TTTCATGTTTGTGTTGGTAGCTGTTCTCCCCACCTAGGAGTTTAGTTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGTTTGTGTTGGTAGCTGTTCTCCCCACCTAGGAGTTTAGTTTTG  250

seq1  CTACAAGAATAGCTCCTCTATAAGGACGAAAATGGGAGGAGCACAAGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAGAATAGCTCCTCTATAAGGACGAAAATGGGAGGAGCACAAGCAC  300

seq1  AAGTTGTTATTGTAGCTTTGAACTAAGAAATCCTCCTGCTTCCTTTTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGTTATTGTAGCTTTGAACTAAGAAATCCTCCTGCTTCCTTTTTAT  350

seq1  GAAATGTATTAAACTTCCTAATGGAGAAGTCAGAGTACACATATACACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTATTAAACTTCCTAATGGAGAAGTCAGAGTACACATATACACAT  400

seq1  GCCTAATGAACTCTAGTATCACGGGTAGCAGAGAAATTACTAGAGACGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAATGAACTCTAGTATCACGGGTAGCAGAGAAATTACTAGAGACGTT  450

seq1  CTATAAGAATCTGAAAGAGTCTTACATTCAATTATTTTTCTATTTACTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAGAATCTGAAAGAGTCTTACATTCAATTATTTTTCTATTTACTAT  500

seq1  GTGATAAGAAATAGAAGAATATATATATATATACATATATCATATATATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAAGAAATAGAAGAATATATATATATATACATATATCATATATATA  550

seq1  TACATATATCATATATATATGATACAGGAAAAGGGAGGGCAAGCCTAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATATCATATATATATGATACAGGAAAAGGGAGGGCAAGCCTAATT  600

seq1  CTAGATGTGAAGAACAGTTTCAATTGTTTACTTTGGTAATATTTAAAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATGTGAAGAACAGTTTCAATTGTTTACTTTGGTAATATTTAAAATC  650

seq1  ATAAGAGTGGTGGAACTCTGGGCATGTTGTGGTGGATCATCTTGATAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAGTGGTGGAACTCTGGGCATGTTGTGGTGGATCATCTTGATAAGT  700

seq1  GTATGTAAGATAGGACGATATGCCCATTCTGGGTGGTACCATACCCTACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTAAGATAGGACGATATGCCCATTCTGGGTGGTACCATACCCTACT  750

seq1  CTTGGATCATAGACTGTATCGAAAGATAGTATGAGCTAATCATGGGCATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGATCATAGACTGTATCGAAAGATAGTATGAGCTAATCATGGGCATC  800

seq1  AAGTTCTCTTTACTTCTTGAACATGCAAGCCGTGTGATCTGTTGTGCCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCTCTTTACTTCTTGAACATGCAAGCCGTGTGATCTGTTGTGCCAA  850

seq1  ACTCTTCTTACTAT-GGCTGTGTCCTCAATCTATGAACTAGGAATAATCT  899
      ||||||| |||||| |||||||||||||||||||||||||||||||||||
seq2  ACTCTTC-TACTATGGGCTGTGTCCTCAATCTATGAACTAGGAATAATCT  899

seq1  TTCTTATGTTTTTCAGGGTACCTTTGTATCAAAAAGAAAAACAACAAAGA  949
      ||| |||||||||||||||||||||||||| |||||| ||||||| ||||
seq2  TTC-TATGTTTTTCAGGGTACCTTTGTATC-AAAAGATAAACAAC-AAGA  946

seq1  CACTGGAATAAAAACAAAATACTATTAACTAAATACTTGTATAATAGCTA  999
      |||||||||||||   |||||||||||||| ||||||||||| |||||||
seq2  CACTGGAATAAAA--CAAATACTATTAACT-AATACTTGTAT-ATAGCTA  992

seq1  ATTTTACCCATTGCAAGTATTTTTTCATATATA-CTGGACAATATAAATA  1048
      |||||||||||||| |||| |||||||| |||| |||||||||||||   
seq2  ATTTTACCCATTGC-AGTA-TTTTTCATTTATACCTGGACAATATAA--T  1038

seq1  CATGTAGCATTAATTAATTTACATTTAG  1076
      ||||||||||| |||||||| |||||||
seq2  CATGTAGCATT-ATTAATTT-CATTTAG  1064

seq1: chr18_27173738_27174771
seq2: B6Ng01-141K14.g_67_1084 (reverse)

seq1  AAGAAGCTTAACCACTTTAAAATCTAATCAACAGATGCATGGTTAGTCAC  50
      |||||||||| ||   || |||||| |||||||||||||||| |||||||
seq2  AAGAAGCTTACCC---TTTAAATCT-ATCAACAGATGCATGG-TAGTCAC  45

seq1  AGACTGCGTTTTTCTTTCCTTCCCCATTTCACTTGTGTTAATTATATAAT  100
      ||||||||  ||||||| | ||||||||||||||||||  | ||||| ||
seq2  AGACTGCG--TTTCTTT-CATCCCCATTTCACTTGTGT--AATATAT-AT  89

seq1  TTACATAGTATATCACAGGATAATACAAATATGTTAAAATCAGTATCAGG  150
      ||||||||||||||||||||| |||| |||||||||||||||||||||||
seq2  TTACATAGTATATCACAGGAT-ATAC-AATATGTTAAAATCAGTATCAGG  137

seq1  GAAATGTTTTTAATTGAGCATTTTATTTATTGGAATAGACTTGTTACAAC  200
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATG-TTTTAATTGAGCATTTTATTTATTGGAATAGACTTGTTACAAC  186

seq1  CCCTTGCATAATAAAAATGTTCACCTGTAGCTCTTATCCGTGATTTTTGT  250
      ||||||||||||||||||||||||||||||||| ||||||||| ||||||
seq2  CCCTTGCATAATAAAAATGTTCACCTGTAGCTC-TATCCGTGA-TTTTGT  234

seq1  TGAACTGTGATCACAGAATTAAAGACCGATGTAAATATGCATCCAGTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTGTGATCACAGAATTAAAGACCGATGTAAATATGCATCCAGTGTT  284

seq1  TCAATCAAAACTCCCTTACTCATTGTGAGTTAGGGAAGGACTCCAATGCT  350
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCAATCAAAACTCCCTTACTCATTGTGAGTTAGAGAAGGACTCCAATGCT  334

seq1  CAGGACAGTTCAGAGCAGTGACATACATATCAGAAGGTGGGTTCTAAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACAGTTCAGAGCAGTGACATACATATCAGAAGGTGGGTTCTAAGAA  384

seq1  GAACATACACCAGAAGAAACCCCAGTTGACTGACTCCATTTCTCGGCTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATACACCAGAAGAAACCCCAGTTGACTGACTCCATTTCTCGGCTAT  434

seq1  CCTATTCCTTTCTGATCTGCTTCCATGGCATTTTCTAAAATCAAATCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTCCTTTCTGATCTGCTTCCATGGCATTTTCTAAAATCAAATCACT  484

seq1  AAAATGAAATATCATATGTTTTCCTTTCTTATAGCTTTCCTTCTGCCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAAATATCATATGTTTTCCTTTCTTATAGCTTTCCTTCTGCCTCT  534

seq1  AAATTAGCTTCATGTATCTGGATATAGATTTAATGGTACTCTTTGGGTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGCTTCATGTATCTGGATATAGATTTAATGGTACTCTTTGGGTTA  584

seq1  AAGTTTTTGTTACTTTATCTTAAGTGCCCTTATGACAAAACCTTTTTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTTGTTACTTTATCTTAAGTGCCCTTATGACAAAACCTTTTTTTC  634

seq1  CATGTGCAGATTTTTCCATTTTAGTAGCCCTTGTTATTGCAAATGAACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGCAGATTTTTCCATTTTAGTAGCCCTTGTTATTGCAAATGAACAT  684

seq1  TAATGACAAATGGATATAAAACGAATAAATGATATGGCAATGAAAATATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGACAAATGGATATAAAACGAATAAATGATATGGCAATGAAAATATA  734

seq1  TAGATACTAATATACACATAAGGAAGGGGGATAGAACACTTGTCCTGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATACTAATATACACATAAGGAAGGGGGATAGAACACTTGTCCTGAAA  784

seq1  GCTATGACCAATTTAAGGCTTCCAGTGTAAAGCCCATGGCCAGACTATTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGACCAATTTAAGGCTTCCAGTGTAAAGCCCATGGCCAGACTATTA  834

seq1  ATAACACTGGAGTTTCTTTGTTCCAAAGAAAATCAGAAAGGGTTAACTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACACTGGAGTTTCTTTGTTCCAAAGAAAATCAGAAAGGGTTAACTTT  884

seq1  AGTTAGAATATACATTTTATTTTTAATTTTGAAACAAAATGAAAGTAGTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGAATATACATTTTATTTTTAATTTTGAAACAAAATGAAAGTAGTC  934

seq1  ATGTATGACTAATTCAGAGTGATATTTTAAGGATTAAAGTATTCATTAAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGACTAATTCAGAGTGATATTTTAAGGATTAAAGTATTCATTAAT  984

seq1  AAAGGGAAAACCTTTCTTGCATGAGAATGAATTC  1034
      ||||||||||||||||||||||||||||||||||
seq2  AAAGGGAAAACCTTTCTTGCATGAGAATGAATTC  1018