BAC Information

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BAC

Clone NameB6Ng01-143E21
Chromosome18 (Build37)
Map Location 23,959,615 - 24,053,259
singlet/doubletdoublet
Overlap geneMapre2
Upstream geneNol4, LOC100040579, LOC665797, Dtna
Downstream geneEG665813, LOC100040623, Zfp397, C230097I24Rik, Zfp35, Zfp191, D030070L09Rik, Galnt1, LOC665586, 2700062C07Rik, BC021395, Slc39a6, Epl2, Mocos, Fhod3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143E21.bB6Ng01-143E21.g
ACCDH941277DH941278
length1,0681,081
definitionDH941277|Mus musculus domesticus DNA, BAC clone: B6Ng01-143E21, 5' end.DH941278|Mus musculus domesticus DNA, BAC clone: B6Ng01-143E21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,052,168 - 24,053,259)(23,959,615 - 23,960,700)
sequence
gaattcccatctttctctgtcattggtttcttacatattttgaccttggt
gcctcatgaactcccttctctgctgtgccaattttagtatgtttcttttc
cattcatttcaatagttctgggttctgtattctatctatagattatgttg
ctaaattgctgttgagactcagcaaacaatgggcgtgacagaaccacagc
acacaaagagcttattccaattgggtccttctgatggaagttattattag
tgtattagtgagtgttctcattccaacttgacacaagctatagtcatctg
aaaaaaagggaacttcaattgagaaaatgcttcatgtaggcaagtctgta
ggacattttcctaactattgattgatggggttgggcccagtccactgtgg
gtggtgccatctgtacgctgatggtcctgaggtctataagaaagcaggcc
aaccatgtgaagctagccaggaagcagcatccctcacggcctctgcatca
gctcctgccccaggttcctgccctatttgattcctgtcttggcttctctc
aatgactatgactcaagctgtgtaaagcaagcagagcctctcctctccaa
gttgcttttggtcagagtgtttcatcaccatagcagtaaccttcgctatg
acacttgggtaaaactgtaacaactgtaaattctaaggtattacagttat
tacatttgatttcaagtaagaacctgtacttccttttaaaacacttatcc
attgacacacatgaagaaaccctccctttcctctaagtcagcaacacagt
atggattgatctgtgagtccacacacacatcctgttacacagacaagtgc
tcactggaaagataactgctcagatagaacgtaagaatagtccagacaga
ttttaacgtatagtttttttattaatatgtaaagatcacgcagtcaagtt
atcacatattcagagacaaaagctattctacatgcgacagtagatgggta
tgtaatgaatgagcatctgatagactcttcatctatatgctatactatcg
aatttatattaacataca
gaattccaggacagccagggctatacagagaaaccctgtctcaaaaaaac
aaaaaatcaaaaaaaaaaaaaaagttttcactgagtgtgatgagctggat
cagcaagcaaggaggtcttcactgagactgagatggaaagaattggtgag
acattctttcaagagtagccctttcctagatttttcaatgtgaaatgaga
caaagaaggtcccctagttttggctgtaccttcagcctatttgatgtctc
tcttctaggacacagacccagagaccagttggttggttttttattgtttt
tgttttgttttgttttgtttgttttaatcttcattcctacattcaagtgg
gccttgaaaagatggcccctttccacctttcctgctggaaaccccaggac
tcaatttcccaagcctgtaccatcctctctcctaagtggagtttgccttc
ctcgttcctccaaggccaaatggaagaacagctgtcaggtaacctgattt
gtggggagaggaatgaaacacatctgtttaatgttttcaaattattgccc
ctgttacccctgcatcttatagggtagtggctgtctcaggagctctctgg
gtccctttatagtagcatggttcagagaagtcatagaggacgatttacag
gagcccgagagtctctcccctgctggactcattatccctccctttttagt
ctcccaactgaatttttgggccattgtcccctcttgggacaactagacag
ggatgagtgggtaggagtatttacttcgcaaattactgatagaaagaatt
taaattaatgaactatacattcaaattttgacaaagttagtcctccacca
atagcaccaattatgtctaacatatttaaatatgagatcatgcgaaagtg
agctccatcaaagaatctatgcttgagagagtacagtgagaacagaatgc
ttgagctgcttggatagcattcttcacgtgaagactgactgactgctttt
ccgcagggaaagcggttgggaaagaaaccaagtcagaattaaacagtggg
tcaggcaacagaatgcgaaggaagtgtaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_24052168_24053259
seq2: B6Ng01-143E21.b_47_1114 (reverse)

seq1  TGTATTGTTAATTATAAATATCGATAAGTAATAGCATAATAGATGAAGAG  50
      |||| |||||| ||||||| ||||| ||| ||||||| ||||||||||| 
seq2  TGTA-TGTTAA-TATAAAT-TCGAT-AGT-ATAGCAT-ATAGATGAAGA-  43

seq1  GTCTTATTCAGATGCTTCATGTCCATT--TTACATTACCCATCTACTGTC  98
      ||||   |||||||||       ||||  ||||| |||||||||||||||
seq2  GTCT--ATCAGATGCT-------CATTCATTACA-TACCCATCTACTGTC  83

seq1  GCATGGTAGGATAGCTTTTTGTCTCTGAATATGTGAATAACTTGACTTGC  148
      |||| |||| ||||| ||||||||||||||||||| |||||||||| |||
seq2  GCAT-GTAGAATAGC-TTTTGTCTCTGAATATGTG-ATAACTTGAC-TGC  129

seq1  GTTGATCTTTTTACATATTTAATAAAAAAACTATACGTTAAAATCTGTCT  198
      | |||||  |||||||| ||||||||||||||||||||||||||||||||
seq2  G-TGATC--TTTACATA-TTAATAAAAAAACTATACGTTAAAATCTGTCT  175

seq1  GGACTTATTCTTACGTTCTTATCTGAGCAGTTATCTTTCCAGTGAGCACT  248
      |||| ||||||||||||| |||||||||||||||||||||||||||||||
seq2  GGAC-TATTCTTACGTTC-TATCTGAGCAGTTATCTTTCCAGTGAGCACT  223

seq1  TGTCTGTGTAACAGGATGTGTGTGTGGACTCACAGATCAATCCATACTGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTGTAACAGGATGTGTGTGTGGACTCACAGATCAATCCATACTGT  273

seq1  GTTGCTGACTTAGAGGAAAGGGAGGGTTTCTTCATGTGTGTCAATGGATA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTGACTTAGAGGAAAGGGAGGGTTTCTTCATGTGTGTCAATGGATA  323

seq1  AGTGTTTTAAAAGGAAGTACAGGTTCTTACTTGAAATCAAATGTAATAAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTTAAAAGGAAGTACAGGTTCTTACTTGAAATCAAATGTAATAAC  373

seq1  TGTAATACCTTAGAATTTACAGTTGTTACAGTTTTA-CCAAGTGTCATAG  447
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TGTAATACCTTAGAATTTACAGTTGTTACAGTTTTACCCAAGTGTCATAG  423

seq1  CGAAGGTTACTGCTATGGTGATGAAACACTCTGACCAAAAGCAACTTGGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGGTTACTGCTATGGTGATGAAACACTCTGACCAAAAGCAACTTGGA  473

seq1  GAGGAGAGGCTCTGCTTGCTTTACACAGCTTGAGTCATAGTCATTGAGAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGAGGCTCTGCTTGCTTTACACAGCTTGAGTCATAGTCATTGAGAG  523

seq1  AAGCCAAGACAGGAATCAAATAGGGCAGGAACCTGGGGCAGGAGCTGATG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAAGACAGGAATCAAATAGGGCAGGAACCTGGGGCAGGAGCTGATG  573

seq1  CAGAGGCCGTGAGGGATGCTGCTTCCTGGCTAGCTTCACATGGTTGGCCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCCGTGAGGGATGCTGCTTCCTGGCTAGCTTCACATGGTTGGCCT  623

seq1  GCTTTCTTATAGACCTCAGGACCATCAGCGTACAGATGGCACCACCCACA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTTATAGACCTCAGGACCATCAGCGTACAGATGGCACCACCCACA  673

seq1  GTGGACTGGGCCCAACCCCATCAATCAATAGTTAGGAAAATGTCCTACAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACTGGGCCCAACCCCATCAATCAATAGTTAGGAAAATGTCCTACAG  723

seq1  ACTTGCCTACATGAAGCATTTTCTCAATTGAAGTTCCCTTTTTTTCAGAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCCTACATGAAGCATTTTCTCAATTGAAGTTCCCTTTTTTTCAGAT  773

seq1  GACTATAGCTTGTGTCAAGTTGGAATGAGAACACTCACTAATACACTAAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATAGCTTGTGTCAAGTTGGAATGAGAACACTCACTAATACACTAAT  823

seq1  AATAACTTCCATCAGAAGGACCCAATTGGAATAAGCTCTTTGTGTGCTGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTTCCATCAGAAGGACCCAATTGGAATAAGCTCTTTGTGTGCTGT  873

seq1  GGTTCTGTCACGCCCATTGTTTGCTGAGTCTCAACAGCAATTTAGCAACA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTGTCACGCCCATTGTTTGCTGAGTCTCAACAGCAATTTAGCAACA  923

seq1  TAATCTATAGATAGAATACAGAACCCAGAACTATTGAAATGAATGGAAAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTATAGATAGAATACAGAACCCAGAACTATTGAAATGAATGGAAAA  973

seq1  GAAACATACTAAAATTGGCACAGCAGAGAAGGGAGTTCATGAGGCACCAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACATACTAAAATTGGCACAGCAGAGAAGGGAGTTCATGAGGCACCAA  1023

seq1  GGTCAAAATATGTAAGAAACCAATGACAGAGAAAGATGGGAATTC  1092
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAAAATATGTAAGAAACCAATGACAGAGAAAGATGGGAATTC  1068

seq1: chr18_23959615_23960700
seq2: B6Ng01-143E21.g_67_1147

seq1  GAATTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAAAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAAAAAC  50

seq1  AAAAAATCAAAAAAAAAAAAAAAGTTTTCACTGAGTGTGATGAGCTGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATCAAAAAAAAAAAAAAAGTTTTCACTGAGTGTGATGAGCTGGAT  100

seq1  CAGCAAGCAAGGAGGTCTTCACTGAGACTGAGATGGAAAGAATTGGTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGCAAGGAGGTCTTCACTGAGACTGAGATGGAAAGAATTGGTGAG  150

seq1  ACATTCTTTCAAGAGTAGCCCTTTCCTAGATTTTTCAATGTGAAATGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTTTCAAGAGTAGCCCTTTCCTAGATTTTTCAATGTGAAATGAGA  200

seq1  CAAAGAAGGTCCCCTAGTTTTGGCTGTACCTTCAGCCTATTTGATGTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAGGTCCCCTAGTTTTGGCTGTACCTTCAGCCTATTTGATGTCTC  250

seq1  TCTTCTAGGACACAGACCCAGAGACCAGTTGGTTGGTTTTTTATTGTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTAGGACACAGACCCAGAGACCAGTTGGTTGGTTTTTTATTGTTTT  300

seq1  TGTTTTGTTTTGTTTTGTTTGTTTTAATCTTCATTCCTACATTCAAGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTTTGTTTTGTTTGTTTTAATCTTCATTCCTACATTCAAGTGG  350

seq1  GCCTTGAAAAGATGGCCCCTTTCCACCTTTCCTGCTGGAAACCCCAGGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGAAAAGATGGCCCCTTTCCACCTTTCCTGCTGGAAACCCCAGGAC  400

seq1  TCAATTTCCCAAGCCTGTACCATCCTCTCTCCTAAGTGGAGTTTGCCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTCCCAAGCCTGTACCATCCTCTCTCCTAAGTGGAGTTTGCCTTC  450

seq1  CTCGTTCCTCCAAGGCCAAATGGAAGAACAGCTGTCAGGTAACCTGATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTTCCTCCAAGGCCAAATGGAAGAACAGCTGTCAGGTAACCTGATTT  500

seq1  GTGGGGAGAGGAATGAAACACATCTGTTTAATGTTTTCAAATTATTGCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGAGAGGAATGAAACACATCTGTTTAATGTTTTCAAATTATTGCCC  550

seq1  CTGTTACCCCTGCATCTTATAGGGTAGTGGCTGTCTCAGGAGCTCTCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTACCCCTGCATCTTATAGGGTAGTGGCTGTCTCAGGAGCTCTCTGG  600

seq1  GTCCCTTTATAGTAGCATGGTTCAGAGAAGTCATAGAGGACGATTTACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTTTATAGTAGCATGGTTCAGAGAAGTCATAGAGGACGATTTACAG  650

seq1  GAGCCCGAGAGTCTCTCCCCTGCTGGACTCATTATCCCTCCCTTTTTAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCGAGAGTCTCTCCCCTGCTGGACTCATTATCCCTCCCTTTTTAGT  700

seq1  CTCCCAACTGAATTTTT-GGCCATTGTCCCCTCTTGGGACAACTAGACAG  749
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTCCCAACTGAATTTTTGGGCCATTGTCCCCTCTTGGGACAACTAGACAG  750

seq1  GGATGAGTGGGTAGGAGTATTTACTTCGCAAACTACTGATAGAAAGGAAT  799
      |||||||||||||||||||||||||||||||| |||||||||||| ||||
seq2  GGATGAGTGGGTAGGAGTATTTACTTCGCAAATTACTGATAGAAA-GAAT  799

seq1  TTAAATTAATGAACTATACATTCAAATTTTGACAAAGTTAGTCCT-CACC  848
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTAAATTAATGAACTATACATTCAAATTTTGACAAAGTTAGTCCTCCACC  849

seq1  -ATAGCACCAATTATGTCTAACATATTTAAATATGAGATCATGCGAAAGT  897
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCACCAATTATGTCTAACATATTTAAATATGAGATCATGCGAAAGT  899

seq1  GAGCTCCATCAAAGAACCCATGC-TGAGAGAGTACAGTGAGAACAGAATG  946
      |||||||||||||||| | |||| ||||||||||||||||||||||||||
seq2  GAGCTCCATCAAAGAATCTATGCTTGAGAGAGTACAGTGAGAACAGAATG  949

seq1  CTTGAGCTGCTTGGATAGCATCCTTCACGTTGAGACTGACTGACTGCTTT  996
      ||||||||||||||||||||| ||||||||  ||||||||||||||||||
seq2  CTTGAGCTGCTTGGATAGCATTCTTCACGTGAAGACTGACTGACTGCTTT  999

seq1  TCCGGCAGGGAAAGCGGTTGTGAAAGGAAACAAGTCAGAGAAATAGACAA  1046
      ||| |||||||||||||||| ||||| || ||||||  |||| || || |
seq2  TCC-GCAGGGAAAGCGGTTGGGAAAGAAACCAAGTC--AGAATTAAAC-A  1045

seq1  GTGGGTCAAGCAACAGAAGTAGCAGAAGGAAGTGTGAATA  1086
      |||||||| |||||||||   || ||||||||||| ||||
seq2  GTGGGTCAGGCAACAGAA--TGC-GAAGGAAGTGT-AATA  1081