This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
Previous ver.
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RIKEN MSM/Ms Mouse BAC clones & Library
BAC clone ordering.
BAC Information
Click to search
Search Parameter
BAC name
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search by nearby gene name.
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Search Result
BAC
Clone Name
B6Ng01-143L20
Chromosome
18 (Build37)
Map Location
49,691,606 - 49,846,020
singlet/doublet
doublet
Overlap gene
none
Upstream gene
LOC545470
Downstream gene
Dtwd2
,
Dmxl1
,
Tnfaip8
,
Hsd17b4
,
LOC626721
,
LOC667233
,
Gm93
,
Hdhd1a
Link
Open Mouse BAC browser
Click to get alignment info.
name
LOC545470
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:545470
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins
pseudo
: _no_value
name
Dtwd2
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:68857
MGI:1916107
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Dmxl1
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:240283
MGI:2443926
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Tnfaip8
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:106869
MGI:2147191
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Hsd17b4
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:15488
MGI:105089
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC626721
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:626721
definition
note
: CD63 antigen pseudogene
pseudo
: _no_value
name
LOC667233
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:667233
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 16 Proteins
pseudo
: _no_value
name
Gm93
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:225497
MGI:2684939
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Hdhd1a
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:67365
MGI:1914615
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Dtwd2
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142370433
GeneID:68857
MGI:1916107
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: DTW domain containing 2
transcript_id
: NM_026854.2
name
Dmxl1
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:124487030
GeneID:240283
MGI:2443926
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: Dmx-like 1
transcript_id
: NM_001081371.1
name
Tnfaip8
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:19527361
GeneID:106869
MGI:2147191
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: tumor necrosis factor, alpha-induced protein 8
transcript_id
: NM_134131.1
name
Hsd17b4
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:31982272
GeneID:15488
MGI:105089
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: hydroxysteroid (17-beta) dehydrogenase 4
transcript_id
: NM_008292.2
name
Gm93
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:51783960
GeneID:225497
MGI:2684939
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: gene model 93, (NCBI)
transcript_id
: NM_001004061.1
name
Hdhd1a
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142376210
GeneID:67365
MGI:1914615
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: haloacid dehalogenase-like hydrolase domain
transcript_id
: NM_026108.2
name
Dtwd2
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:110625694
GeneID:68857
MGI:1916107
definition
codon_start
: 1
product
: DTW domain containing 2
protein_id
: NP_081130.1
name
Dmxl1
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:124487031
GeneID:240283
MGI:2443926
definition
GO_function
: GO:0004289 - subtilase activity [Evidence IEA]
GO_process
: GO:0006508 - proteolysis [Evidence IEA]
codon_start
: 1
note
: X-like 1
product
: Dmx-like 1
protein_id
: NP_001074840.1
name
Tnfaip8
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:19527362
GeneID:106869
MGI:2147191
definition
codon_start
: 1
product
: TNF-induced protein
protein_id
: NP_598892.1
name
Hsd17b4
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:31982273
CCDS:CCDS29242.1
GeneID:15488
MGI:105089
definition
GO_component
: GO:0005739 - mitochondrion [Evidence IDA]; GO:0005777 - peroxisome [Evidence IEA]
GO_function
: GO:0003857 - 3-hydroxyacyl-CoA dehydrogenase activity [Evidence IEA]; GO:0016853 - isomerase activity [Evidence IEA]; GO:0016829 - lyase activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0005498 - sterol carrier activity [Evidence IEA]
GO_process
: GO:0006631 - fatty acid metabolism [Evidence IEA]; GO:0006629 - lipid metabolism [Evidence IEA]; GO:0008152 - metabolism [Evidence IEA]
codon_start
: 1
note
: hydroxysteroid 17-beta dehydrogenase 4; D-bifunctional protein; multifunctional protein 2
product
: hydroxysteroid (17-beta) dehydrogenase 4
protein_id
: NP_032318.2
name
Gm93
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:51783961
CCDS:CCDS29243.1
GeneID:225497
MGI:2684939
definition
GO_component
: GO:0005622 - intracellular [Evidence IEA]
GO_function
: GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
codon_start
: 1
product
: hypothetical protein LOC225497
protein_id
: NP_001004061.1
name
Hdhd1a
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:13385612
CCDS:CCDS29244.1
GeneID:67365
MGI:1914615
definition
codon_start
: 1
exception
: mismatches in translation
product
: haloacid dehalogenase-like hydrolase domain
protein_id
: NP_080384.1
name
LOC545470
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:545470
definition
number
: 1
pseudo
: _no_value
name
LOC667233
(CDS detail)
type
misc_RNA
link
vega
ensembl
NCBI
xref
GI:149269764
GeneID:667233
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 16 Proteins
product
: similar to uracil DNA glycosylase
pseudo
: _no_value
transcript_id
: XR_033512.1
clone name
MSMg01-270H15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-191H23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-444F06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-311F14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-476N08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-191B17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-061M17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-058C20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-532H06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-478B02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-437A06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-377N06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-535H12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-127I15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-522C01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-055B20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-322N22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-507H15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-400F18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-312K15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-214E23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-082D11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-446N01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-336I15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-352F12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-151M06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-353P03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-530H20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-457I12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-305G07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-214C05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-323I16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-105N01
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-452H22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-335F12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-128I17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-164F12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-434B01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-049M03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-447P19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-134F18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-231E09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-096N03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-524E15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-118K05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-543C16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-522G21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-516E15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-051J10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-383K02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-183J07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-056A03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-514B10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-296H08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-422B10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-046J10
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-431M18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-448F22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-130G16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-492I15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-446J02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-262K24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-125K15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-363N12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-476M10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-313G12
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-368H23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-540P06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-057I17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-212L17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-453G22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-347P09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-130E03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-469N16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-451M07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-154D05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-154H01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-331G20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-160G15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-358F02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-311C15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-178M07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-102G02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-380D10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-109B13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-361C07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-404B14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-426I21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-277N09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-304A11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-088N09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-271J17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-487E12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-069F02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-305D05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-385E13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-362P13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-544N04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-165B07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-338B06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-329M07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-345M17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-358I10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-337C05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-107B08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-182H23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-521M10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-498B08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-263F09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-324H05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-467C03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-520P15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-132J01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-434D04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-264N05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-348G20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-009C03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-166M24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-162A11
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-271O05
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-076L19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-254C13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-140M24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-197N23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-135E20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-305P04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-285N05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-017J04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-312M02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-320M05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-298A01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-316G19
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-212L17
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-267P18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-209B19
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-006I02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-017J06
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-313K16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-350A24
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-119B06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-231P01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-001I17
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-193H01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-316A08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-087F04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-323K04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-285L04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-137B19
singlet/doublet
doublet
plural/unique
unique
clone name
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B6Ng01-311B12
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