BAC Information

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BAC

Clone NameB6Ng01-143O09
Chromosome18 (Build37)
Map Location 31,860,654 - 31,995,129
singlet/doubletdoublet
Overlap geneSap130, LOC640549, Ammecr1l, Polr2d, EG626327, Wdr33
Upstream geneRit2, EG666130, Syt4, LOC383420, Slc25a46
Downstream geneSft2d3, Lims2, Gpr17, Myo7b, Iws1, Proc, LOC546710, Map3k2, Ercc3, Bin1, Gypc, LOC100041160, LOC100041170, Tslp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143O09.bB6Ng01-143O09.g
ACCDH941714DH941715
length8231,116
definitionDH941714|Mus musculus domesticus DNA, BAC clone: B6Ng01-143O09, 5' end.DH941715|Mus musculus domesticus DNA, BAC clone: B6Ng01-143O09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,860,654 - 31,861,476)(31,993,988 - 31,995,129)
sequence
gaattcccgagagaaacagtttgagggggaatttgtcctggcacaggttt
cagatgtttgtccataataggagggagtatatggcacggcttgtgccatg
gcagccaggttacaaatgcctaccttaatgagattttccttccctccttt
ccccccatcctggcccaccagctgatgggatagtgcagtccatgttcggg
caaatcttacctcttagtcaaccgtctctgctcctggcttctatgaggtg
agcaagtctgtatcaccacacagacctaggcctgtagcctagaaacagtg
gagccgactataaagttgtgagtcaagagacagccaccaggcaagagttg
cctcatttcatctgcagacctgtactgtccagaaaagggacagcttagct
ctcctgagacaggataggctgctccttcacttcctgtttctcaaggcctg
tcagatgctcctgggccagaaggctgaagacggaagtgctccatcttact
gacttactggcactgtataggtaggcagctctctctacaatttgtctcac
ttctggaagctgtgttaggcttcctatatatttgagttaatgttggacat
tctcagatttctgacggggttggaaaactacttccagtctcacagccacc
ccaggctgtttacttggagagaacagatgtgagaggatggctttcagatg
gcgtccaatctaaagccaggatgtaagtcaaggtagaatcataagtcttt
taacttaggatagatgacaatgttctgtcttgatgacataaatgatggac
tgggtgttaggtctgtcttatac
gaattctttcctcatggcaacgaagaaaatcccagattctaacagtgccg
tcatcagagcatgtagcaaatttattatccgtgggtgagaaactgttacg
tgaagacacacagcaggggaaagaagtcagcatttaacagatcatccatg
cttctcagacagggaaaaataaaaacactgtgctgcattataaacaggag
aaggaagtatccagtgaagaggcctttaaagagaatgtagtcagctaaca
tatgcatctcatccaaaggcttcgaaaaaaattgtttaccattttccatc
aatattccaagacctactcggtacattactagtcctaatgctgcctttgc
tcctttgggtatatttcctatatcaacaaaacacggggagttgccttaac
agtgaaactgaatgtattctattcttaacaatattccttcatataatcat
ttaagctacataggaatactgctcaaaacatgagcatcagtttctgcctc
agacacttaaacttcaaaaatggtaggctcaaacacttttaagcaggcta
gtaaaactgactgctcatcatctttatatataatgtttctcactttttta
aaatgcttgtgataacctcatgccttcttccagatataaagcaatcccat
gaacagtgcacctgttaaaatatctattcagccttctgctgaaagccaat
gactctgctatacaagagggagccagtttcttcctggctgtgaaaaagat
caagactctccatgaactgcatgggctcccttcaacgtttctcaatgaat
taacggtgagaaaaacctctgagcacgacactgaggccaagtctgggaaa
catggatatgcaaccatttctgtggatttctgaaagtagaaacaaggaac
tgccaaagtgtttctaaagtcacctcttcccacacatagatggcacacat
aaaagatgctgcttagctttattctgagctgcagcatcttctcaggctta
tttgtgaaactttccccagttactacacatttctcactgttatgtaacat
cactcctggaatgtttactccactcataatttgctagtcatagtttcaac
agtgattcagaagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_31860654_31861476
seq2: B6Ng01-143O09.b_48_870

seq1  GAATTCCCGAGAGAAACAGTTTGAGGGGGAATTTGTCCTGGCACAGGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCGAGAGAAACAGTTTGAGGGGGAATTTGTCCTGGCACAGGTTT  50

seq1  CAGATGTTTGTCCATAATAGGAGGGAGTATATGGCACGGCTTGTGCCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGTTTGTCCATAATAGGAGGGAGTATATGGCACGGCTTGTGCCATG  100

seq1  GCAGCCAGGTTACAAATGCCTACCTTAATGAGATTTTCCTTCCCTCCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCAGGTTACAAATGCCTACCTTAATGAGATTTTCCTTCCCTCCTTT  150

seq1  CCCCCCATCCTGGCCCACCAGCTGATGGGATAGTGCAGTCCATGTTCGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCATCCTGGCCCACCAGCTGATGGGATAGTGCAGTCCATGTTCGGG  200

seq1  CAAATCTTACCTCTTAGTCAACCGTCTCTGCTCCTGGCTTCTATGAGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCTTACCTCTTAGTCAACCGTCTCTGCTCCTGGCTTCTATGAGGTG  250

seq1  AGCAAGTCTGTATCACCACACAGACCTAGGCCTGTAGCCTAGAAACAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGTCTGTATCACCACACAGACCTAGGCCTGTAGCCTAGAAACAGTG  300

seq1  GAGCCGACTATAAAGTTGTGAGTCAAGAGACAGCCACCAGGCAAGAGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCGACTATAAAGTTGTGAGTCAAGAGACAGCCACCAGGCAAGAGTTG  350

seq1  CCTCATTTCATCTGCAGACCTGTACTGTCCAGAAAAGGGACAGCTTAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATTTCATCTGCAGACCTGTACTGTCCAGAAAAGGGACAGCTTAGCT  400

seq1  CTCCTGAGACAGGATAGGCTGCTCCTTCACTTCCTGTTTCTCAAGGCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGAGACAGGATAGGCTGCTCCTTCACTTCCTGTTTCTCAAGGCCTG  450

seq1  TCAGATGCTCCTGGGCCAGAAGGCTGAAGACGGAAGTGCTCCATCTTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATGCTCCTGGGCCAGAAGGCTGAAGACGGAAGTGCTCCATCTTACT  500

seq1  GACTTACTGGCACTGTATAGGTAGGCAGCTCTCTCTACAATTTGTCTCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTACTGGCACTGTATAGGTAGGCAGCTCTCTCTACAATTTGTCTCAC  550

seq1  TTCTGGAAGCTGTGTTAGGCTTCCTATATATTTGAGTTAATGTTGGACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAAGCTGTGTTAGGCTTCCTATATATTTGAGTTAATGTTGGACAT  600

seq1  TCTCAGATTTCTGACGGGGTTGGAAAACTACTTCCAGTCTCACAGCCACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGATTTCTGACGGGGTTGGAAAACTACTTCCAGTCTCACAGCCACC  650

seq1  CCAGGCTGTTTACTTGGAGAGAACAGATGTGAGAGGATGGCTTTCAGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTGTTTACTTGGAGAGAACAGATGTGAGAGGATGGCTTTCAGATG  700

seq1  GCGTCCAATCTAAAGCCAGGATGTAAGTCAAGGTAGAATCATAAGTCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTCCAATCTAAAGCCAGGATGTAAGTCAAGGTAGAATCATAAGTCTTT  750

seq1  TAACTTAGGATAGATGACAATGTTCTGTCTTGATGACATAAATGATGGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTAGGATAGATGACAATGTTCTGTCTTGATGACATAAATGATGGAC  800

seq1  TGGGTGTTAGGTCTGTCTTATAC  823
      |||||||||||||||||||||||
seq2  TGGGTGTTAGGTCTGTCTTATAC  823

seq1: chr18_31993988_31995129
seq2: B6Ng01-143O09.g_69_1184 (reverse)

seq1  TTTCTTCTGATTCACTGTTGATAACATGACTTATGCAAATGTATGAGTGG  50
      |||||||||| |||||||||| |  ||||||   |||||| |||||||||
seq2  TTTCTTCTGAATCACTGTTGAAACTATGACT--AGCAAAT-TATGAGTGG  47

seq1  AGTTAAAACATTCCCAGTGAGTTGTATGTTTTTACATAACAGTGAGAAAT  100
      |||  ||||||| |||| |||     || | |||||||||||||||||||
seq2  AGT--AAACATT-CCAG-GAG-----TGATGTTACATAACAGTGAGAAAT  88

seq1  GTGTAGTAAACTTGGGGGAAAGAGTTTCACAAATAAGCCTGAAGAAGAAT  150
      ||||||| ||||  ||||||  ||||||||||||||||||| ||||||  
seq2  GTGTAGT-AACT--GGGGAA--AGTTTCACAAATAAGCCTG-AGAAGA--  130

seq1  GGCTGCAGCCTCAGAATAAAGCTAAGCAGCATTCTTTTATGGTTGTGCCA  200
       ||||||| |||||||||||||||||||||| |||||||||  |||||||
seq2  TGCTGCAG-CTCAGAATAAAGCTAAGCAGCA-TCTTTTATG--TGTGCCA  176

seq1  TCTATGTGTGGGAAGAGGTTGACTTTAGAAACACTTTTGGCAGTTCCTTG  250
      |||||||||||||||||| ||||||||||||||| |||||||||||||||
seq2  TCTATGTGTGGGAAGAGG-TGACTTTAGAAACAC-TTTGGCAGTTCCTTG  224

seq1  TTTCTACTTTCAGAAATCCACAGAAATGGTTGCATATCCATGTTT-CCAG  299
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTTCTACTTTCAGAAATCCACAGAAATGGTTGCATATCCATGTTTCCCAG  274

seq1  ACTTGGCCTCAGTGTCGTGCTCAGAGGTTTTTCTCACCGTTAATTCATTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGCCTCAGTGTCGTGCTCAGAGGTTTTTCTCACCGTTAATTCATTG  324

seq1  AGAAACGTTGAAGGGAGCCCATGCAGTTCATGGAGAGTCTTGATCTTTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGAAACGTTGAAGGGAGCCCATGCAGTTCATGGAGAGTCTTGATC-TTTT  373

seq1  TCACAGCCAGGAAGAAACTGGCTCCCTCTTGTATAGCAGAGTCATTGGCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGCCAGGAAGAAACTGGCTCCCTCTTGTATAGCAGAGTCATTGGCT  423

seq1  TTCAGCAGAAGGCTGAATAGATATTTTAACAGGTGCACTGTTCATGGGAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCAGAAGGCTGAATAGATATTTTAACAGGTGCACTGTTCATGGGAT  473

seq1  TGCTTTATATCTGGAAGAAGGCATGAGGTTATCACAAGCATTTTAAAAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTATATCTGGAAGAAGGCATGAGGTTATCACAAGCATTTTAAAAAA  523

seq1  GTGAGAAACATTATATATAAAGATGATGAGCAGTCAGTTTTACTAGCCTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAAACATTATATATAAAGATGATGAGCAGTCAGTTTTACTAGCCTG  573

seq1  CTTAAAAGTGTTTGAGCCTACCATTTTTGAAGTTTAAGTGTCTGAGGCAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAAGTGTTTGAGCCTACCATTTTTGAAGTTTAAGTGTCTGAGGCAG  623

seq1  AAACTGATGCTCATGTTTTGAGCAGTATTCCTATGTAGCTTAAATGATTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGATGCTCATGTTTTGAGCAGTATTCCTATGTAGCTTAAATGATTA  673

seq1  TATGAAGGAATATTGTTAAGAATAGAATACATTCAGTTTCACTGTTAAGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAGGAATATTGTTAAGAATAGAATACATTCAGTTTCACTGTTAAGG  723

seq1  CAACTCCCCGTGTTTTGTTGATATAGGAAATATACCCAAAGGAGCAAAGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCCCCGTGTTTTGTTGATATAGGAAATATACCCAAAGGAGCAAAGG  773

seq1  CAGCATTAGGACTAGTAATGTACCGAGTAGGTCTTGGAATATTGATGGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTAGGACTAGTAATGTACCGAGTAGGTCTTGGAATATTGATGGAA  823

seq1  AATGGTAAACAATTTTTTTCGAAGCCTTTGGATGAGATGCATATGTTAGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTAAACAATTTTTTTCGAAGCCTTTGGATGAGATGCATATGTTAGC  873

seq1  TGACTACATTCTCTTTAAAGGCCTCTTCACTGGATACTTCCTTCTCCTGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTACATTCTCTTTAAAGGCCTCTTCACTGGATACTTCCTTCTCCTGT  923

seq1  TTATAATGCAGCACAGTGTTTTTATTTTTCCCTGTCTGAGAAGCATGGAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATGCAGCACAGTGTTTTTATTTTTCCCTGTCTGAGAAGCATGGAT  973

seq1  GATCTGTTAAATGCTGACTTCTTTCCCCTGCTGTGTGTCTTCACGTAACA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGTTAAATGCTGACTTCTTTCCCCTGCTGTGTGTCTTCACGTAACA  1023

seq1  GTTTCTCACCCACGGATAATAAATTTGCTACATGCTCTGATGACGGCACT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCACCCACGGATAATAAATTTGCTACATGCTCTGATGACGGCACT  1073

seq1  GTTAGAATCTGGGATTTTCTTCGTTGCCATGAGGAAAGAATTC  1142
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAATCTGGGATTTTCTTCGTTGCCATGAGGAAAGAATTC  1116