BAC Information

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BAC

Clone NameB6Ng01-143O24
Chromosome18 (Build37)
Map Location 45,554,221 - 45,554,752
singlet/doubletsinglet
Overlap genenone
Upstream geneDcp2, Mcc, LOC100042883, Ythdc2, LOC626309, LOC225457, LOC100042900
Downstream geneKcnn2, Trim36, LOC100042905, Pggt1b, Ccdc112, EG225468, LOC100042916
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143O24.bB6Ng01-143O24.g
ACCDH941744DH941745
length1,165530
definitionDH941744|Mus musculus domesticus DNA, BAC clone: B6Ng01-143O24, 5' end.DH941745|Mus musculus domesticus DNA, BAC clone: B6Ng01-143O24, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagccatctccttgtaccttgccggtgtgtcacctaacttcccca
ttctcttctgtataaaaagtttgatgctagaaggtcaacttgatcctgat
tcaactttggtacctggtatctgtccagaaatttgtccatttcgtccagg
ttttccagttttgttgagtatagccttttgtagaaggatctgatggtgtt
ttggatttcttcaggatctgttgttatgtctcccttttcagttctgattt
tgttaattaggattttgtctctgtgccctctagtgagtctagctaagggt
ttatctatcttgttgattttctcaaagaaccaactcctcgtttggttaat
tctttgaatagttcttcttgtttccacttggttgatttcacccctgagtt
tgattatttcctgccgtctactcctcttgggtgaatttgcttcctttttt
tctagagcttttagatgtgttgtcaagctgctagtatgtgctctctcccg
tttcttcatggaggcactcagagctatgagtttccctcttagaaatgctt
tcattgtgtcccaaaggtttgggtacgttgtggcttcattttcattaaac
tctaaaaagtctttaatttctttctttattccttccttgaccaaggtatc
attgagaagagtgttattcagtttccacgtgagtgttggctttctgttat
tttttttgttattgaagatcagccttagtgcatggtgatctgataggata
catgggacaatttcaatatttttgaatctgttgaggcctgttttgtgacc
tattatgtggtcaattttggagaatgtaccatggggtgctgagaaaatgt
aatatccttttgtttaagataaaatgttctgtagatatctgtcagatcca
tttggtttcatcacttctgttagtttcagtgtgtccctgtttaggttcct
gtttccatgatctgtccattggtgaaagtggtgtgtgaagtctcccaact
attatgtggggaggggcaatgtgtgctttgagcttactaagttccttatg
aatgagctgcccttgtatttgcgcatagaattccaaatgaagtcctcttg
gagattaccttgagtaacaatgcccccctgtccttttgaaaagactgggc
tgagagaccatcctt
ctgatctttccagaacttttatcatgaatgggtgttggagcttgtcaaat
gctttttctgcatctaacgagatgatcatgtggtttttgtctttgagttt
gtttatataatggattacattgatggattttcgtatattaaaccatccct
gcatccctggaataaaacctacttggtcaggatatatgattactttaatg
tgttcttggattcggttagcgagaattttattgaggatttttgcatcaat
attcataagagaaattggtctgaagttctctatctttgttggatctttct
gtggtttaggtatcagagtaatagtggcttcataaaatgagttgggtaga
gtaccttctacttctatcttgtgaaaaagtttgtgcagaactggaattag
atcttctttgaaggtctcatagaactctgcactaaacccgtctggtcctg
ggctttttttggctgggagactatttataactgcttctattttcttttag
gggatatgggactgtttagaaaggtcaacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_45554221_45554752
seq2: B6Ng01-143O24.g_70_604 (reverse)

seq1  GTTGACC-TTCTAAACAGTCCCATATCCCCTAAA--GAAATAGAAGCAGT  47
      ||||||| ||||||||||||||||||||||||||   |||||||||||||
seq2  GTTGACCTTTCTAAACAGTCCCATATCCCCTAAAAGAAAATAGAAGCAGT  50

seq1  TATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTG  97
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTG  100

seq1  CAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAA  147
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTCTATGAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAA  150

seq1  CTTTTTCACAAGATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCACAAGATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGA  200

seq1  AGCCACTATTACTCTGATACCTAAACCACAGATAGATCCAACAAAGATAG  247
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAG  250

seq1  AGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAAT  297
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGAACTTCAGACCAATTTCTCTTATGAATATTGATGCAAAAATCCTCAAT  300

seq1  AAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCC  347
      ||||||||||||||||||||||||||||||||||||| ||||||  ||||
seq2  AAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGTAATCATATATCC  350

seq1  TGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAA  400

seq1  AATCCATCAATGTAATCCACTATATAAACAAACTCAAAGACAAAAACCAC  447
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCAC  450

seq1  ATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCC  497
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGCTCCAACACCC  500

seq1  ATTCATGATAAAAGTTCTGGAAAGATCAGGAATTC  532
      |||||||||||||||||||||||||||||||||||
seq2  ATTCATGATAAAAGTTCTGGAAAGATCAGGAATTC  535