BAC Information

Click to search

BAC

Clone NameB6Ng01-144G04
Chromosome18 (Build37)
Map Location 55,010,075 - 55,011,191
singlet/doubletsinglet
Overlap genenone
Upstream geneCsnk1g3, EG433184, LOC667360, EG545257
Downstream geneLOC100042489, Zfp608, LOC100043089, LOC667401, LOC667409, LOC629043
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144G04.bB6Ng01-144G04.g
ACCDH942077DH942078
length2931,084
definitionDH942077|Mus musculus domesticus DNA, BAC clone: B6Ng01-144G04, 5' end.DH942078|Mus musculus domesticus DNA, BAC clone: B6Ng01-144G04, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
tggggaattttcagaggatatataaatgttagtgctcagagaagtggtgg
tggtagtggtggtgggttgttggtgctgctgatagctgtgggtcttagtt
tgttaaacagtcatgtacagataaagaagaacaagaataaattagatatc
ctggcagtgaagaccaaacttgccccaacgaactcaattgccctaatcaa
caagaagtagtctaatgataatgttggcccctttcccttctatccccctt
tctttcctatctagtgctggggtgggggggtaagaaaagggta

gaattcagttgatttagtaggtaatggagtctggtgaggtttttgagcag
cgaatgatataatcagtcgagttggagtctgacacatgcttccactcttg
agtaacttttctataaaaatatgcctttatcaaaatatcgttatgaataa
aataatgcatactataaaatatgaataagcaatagaagtggagtaaagac
taagagagtggatgctgtaacatctaggaacagcatgccatccattttgc
ctcggcagagaaaggtgtcaatgctctccccaaataatcacctcacgttg
cttactgcagctgatcttcatccctttaacatggaacagactcttgcatt
ccgcccggatcttccttaagctgcaacatgatgctgagcccgtgaatagg
acctgcactgagaagagacagccttctcccttcataattcctgtgtagag
agattggcatgccctattttagaataagcaaattaacatgggtagtaaga
gatttggagtgttcatgaccattggcccagcacgttggtgtctgagtgtc
tactctcaggcaggacacttaaaaaaaaaagaagaagaagacgaagacga
agaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaag
aagaagaagaagaagaaaagaagagaagctataaagatggctcagaacat
tgggtactagtgttcaattcccagcgctcagcagctcacagccctctgca
actccagttccaggggatctgatactcacctccggcctttaaaggcacca
gcctcaaaagtggtgcatgggcatacatgcaagtaaacacctatgcacct
tataaagtaattcattaaaacaagtggaggaagtgatgtgattaatacaa
gtcaaatatatatgtggtattcacctactatacactacccaagaatacag
aaatttgacaaatagtgtagttatacttatgaaaaagtcagactccttct
ccagagaaatgctagcattcagacttatcattacttatgagagggcttca
acattcacgaggagtcttagtgcgtgactgagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_55010075_55011191
seq2: B6Ng01-144G04.g_68_1151

seq1  GAATTCAGTTGATTTAGTAGGTAATGGAGTCTGGTGAGGTTTTTGAGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTGATTTAGTAGGTAATGGAGTCTGGTGAGGTTTTTGAGCAG  50

seq1  CGAATGATATAATCAGTCGAGTTGGAGTCTGACACATGCTTCCACTCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATGATATAATCAGTCGAGTTGGAGTCTGACACATGCTTCCACTCTTG  100

seq1  AGTAACTTTTCTATAAAAATATGCCTTTATCAAAATATCGTTATGAATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACTTTTCTATAAAAATATGCCTTTATCAAAATATCGTTATGAATAA  150

seq1  AATAATGCATACTATAAAATATGAATAAGCAATAGAAGTGGAGTAAAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGCATACTATAAAATATGAATAAGCAATAGAAGTGGAGTAAAGAC  200

seq1  TAAGAGAGTGGATGCTGTAACATCTAGGAACAGCATGCCATCCATTTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGAGTGGATGCTGTAACATCTAGGAACAGCATGCCATCCATTTTGC  250

seq1  CTCGGCAGAGAAAGGTGTCAATGCTCTCCCCAAATAATCACCTCACGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGCAGAGAAAGGTGTCAATGCTCTCCCCAAATAATCACCTCACGTTG  300

seq1  CTTACTGCAGCTGATCTTCATCCCTTTAACATGGAACAGACTCTTGCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTGCAGCTGATCTTCATCCCTTTAACATGGAACAGACTCTTGCATT  350

seq1  CCGCCCGGATCTTCCTTAAGCTGCAACATGATGCTGAGCCCGTGAATAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCCGGATCTTCCTTAAGCTGCAACATGATGCTGAGCCCGTGAATAGG  400

seq1  ACCTGCACTGAGAAGAGACAGCCTTCTCCCTTCATAATTCCTGTGTAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCACTGAGAAGAGACAGCCTTCTCCCTTCATAATTCCTGTGTAGAG  450

seq1  AGATTGGCATGCCCTATTTTAGAATAAGCAAATTAACATGGGTAGTAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGGCATGCCCTATTTTAGAATAAGCAAATTAACATGGGTAGTAAGA  500

seq1  GATTTGGAGTGTTCATGACCATTGGCCCAGCACGTTGGTGTCTGAGTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGGAGTGTTCATGACCATTGGCCCAGCACGTTGGTGTCTGAGTGTC  550

seq1  TACTCTCAGGCAGGACACTTAAAAAAAAAAGAAGAAGAAGACGAAGACGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  TACTCTCAGGCAGGACACTTAAAAAAAAAAGAAGAAGAAGACGAAGAC--  598

seq1  AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG  650
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG  647

seq1  AAGAAGAAGAAGAAGAAGAAAAGAAGAGAAGCTATAAAGATGGCTCAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAGAAGAAGAAGAAAAGAAGAGAAGCTATAAAGATGGCTCAGAA  697

seq1  CATTGGGTACTAGTGTTCAATTCCCAGCGCTCAGCAGCTCACAGCCCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGGTACTAGTGTTCAATTCCCAGCGCTCAGCAGCTCACAGCCCTCT  747

seq1  GCAACTCCAGTTCCAGGGGATCTGATACTCACCTCCGGCCTTTAAAGGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTCCAGTTCCAGGGGATCTGATACTCACCTCCGGCCTTTAAAGGCA  797

seq1  CCAGCCTCAAAAGTGGTGCATGGCCATACATGCAAGTAAAACACCTATGC  850
      ||||||||||||||||||||||| ||||||||||||| ||||||||||||
seq2  CCAGCCTCAAAAGTGGTGCATGGGCATACATGCAAGT-AAACACCTATGC  846

seq1  ACCTTATAAAGTAAATTCATTAAAAACAAAGTGGAAGGAAGTGATGTGAA  900
      |||||||||||| ||||||||||||   |||||| ||||||||||||| |
seq2  ACCTTATAAAGT-AATTCATTAAAA--CAAGTGG-AGGAAGTGATGTG-A  891

seq1  TTAATACAAGTCAAATATAATATGTGGATATTCACCTACTATACAACTAC  950
      |||||||||||||||||| |||||||| |||||||||||||||| |||||
seq2  TTAATACAAGTCAAATAT-ATATGTGG-TATTCACCTACTATAC-ACTAC  938

seq1  CCAAGAAATAACAGAAATATGACAAAATAGTGTTAGTTATACTTATGAAA  1000
      |||||||   |||||||| |||| |||||||| |||||||||||||| ||
seq2  CCAAGAA--TACAGAAATTTGAC-AAATAGTG-TAGTTATACTTATG-AA  983

seq1  AAAGTCAAGACTCCCTCTCACAGAGACATGCTTAGGCATTCAGACATACA  1050
      |||||| ||||||| |||| |||||| |||||   |||||||||| ||  
seq2  AAAGTC-AGACTCCTTCTC-CAGAGAAATGCT--AGCATTCAGACTTA--  1027

seq1  TTCAAATACTTATGAGAGGAGCTTCAAACCATTCAAACAGAAGGAGTCTT  1100
       || | ||||||||||||| |||||||  ||||    ||  |||||||||
seq2  -TC-ATTACTTATGAGAGG-GCTTCAA--CATT----CACGAGGAGTCTT  1068

seq1  AAGTGCTGAACTGAGTG  1117
       |||||   ||||||||
seq2  -AGTGCGTGACTGAGTG  1084


| Home | SequenceCutter | Blast | Download |