BAC Information

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BAC

Clone NameB6Ng01-144K18
Chromosome18 (Build37)
Map Location 53,031,859 - 53,211,698
singlet/doubletdoublet
Overlap geneSncaip, LOC667317
Upstream geneFtmt, Srfbp1, Lox, Zfp474, 1700034E13Rik, Gykl1, A730036E13Rik
Downstream geneLOC100042430, Snx2, Gm1859, Snx24, Ppic, Prdm6, Ccdc100, Csnk1g3, EG433184, LOC667360
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144K18.bB6Ng01-144K18.g
ACCDH942287DH942288
length1,0331,102
definitionDH942287|Mus musculus domesticus DNA, BAC clone: B6Ng01-144K18, 5' end.DH942288|Mus musculus domesticus DNA, BAC clone: B6Ng01-144K18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,210,659 - 53,211,698)(53,031,859 - 53,032,975)
sequence
gaattctatagtactggccacctgtttttatagaaactagttcagtttag
tttcttatttagtctcctcagtcaaactgaagttgtgtggaggaaatgat
agaagggagataaagtgctatttgtattaatcgtcaaggggacaagcttc
taattattaaaaacagaacatatgtccacaggctctgtaatagaatggat
tctatttaatgcctaacagtaatctactgttggttacttactatttttct
cattttcctccatggctttgagaggattttaagttttaactcatcttttc
aaggagctgcttttatttttgtcttgcaatgcatattttttctttattca
tcatgcctttgttgtttctctctgcatgtgtttggatacatagtttcttt
tttcaacatctcaagatgaatttcctactgattgatttttagcctttttc
ctctaatgtttttagtattctaaacttagagctatgaatgtcttcaaaca
atggtttagttacatccgcaagttttactgcataaaatttgttggcatct
attaaaaatattgtttactttctcaagggagtttgacttgggatgtggat
aatttcttcttgttggaaaatgcaaggatctcatggcttgtgtgcatttg
ttgtagatttctgttgcgtttagagaacatattttgtaagctttatatac
tgactcatagggaatcgttgtggcatatggtaacattaacattctaggta
cctttgagaagaacagggaacctattaccagctatccgctatgtgcccac
tgtggccatccctactgacctttgcagttgttaggactcggccttctcct
ggggctccaggctataggatccatcagatcctctttcagactttgaaagg
ctcattaagaccctggattcccttttcatttctagtgtgtagtaacttcc
ttttatctccaatttagctgtcatgaaaaaaatacttagactctatgcag
atttcttgtgattggtagggaagtttttttttt
gaattcagtcatacttattaagaagccagacgtgaagttcaaagaaatct
aatgcatcttgtaattcttcatacggattgctttacatggtagttagatt
ttctaaaagccaaataacatcatttttataaatagagttgcataggtatt
gagtaggggaactgtctggctaaataaacccacttgtgaattcactaaag
aacacattacagtaaaaataaataaataaataaatatcctaaccctaata
tatctgatatgcaaagctttttttttaaactgtaatccatttacttagta
aaattttatatgttaaaaaatgttttatttaactttgctccatggtaaag
tatgacttcaaatttgcacggtaaatatttgttccaaagaaacctaggag
actggggatgtacttttctttggttgtgcatgaagccatatcagatcaga
actgagtttactgcaaccaaagtgagaaaagagaaactgaatctgaagaa
aaaaactcatctcagtagagttgagttctgtgtgtaccaaaagccaacag
gtactatgttactaggtactagaggtaagaatttgaacaagacatagtac
ctgttcctaaggagatgatacacccaggaattaagacaggttactggtga
taacagtgtcagatgataaagtcagtgtctaggcctgtgacataatccag
ggaacgatatggttagcatgttgttatcccttggaacctatgtcagatat
ccttttaatgccagtgaatattggcccctgccatatttataaaatgtctt
agtgtttatgaaatgtagttctcattagttttcctaactgatggtgaatg
acagaataatttcctcattatgtaattggatgacagcatattttttttat
taattgatatgccctattgcttgttttgatagattaaattttagcacctg
aaagttctaagcacacagttgccatattcaaccctcattgtgagcagcta
catgaggtgggacttatttcttaactcagctacacgctttgcatctaaga
tgccactagtcttctgttcggcttgtttgacacattgtacgactgatata
tt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_53210659_53211698
seq2: B6Ng01-144K18.b_47_1079 (reverse)

seq1  AAAAAAAAAACTTCCCTACCAAATCAACAAGGAAATTCTGCATAGAGTCT  50
      |||||||||||||||||||| |||| |||||  || ||||||||||||||
seq2  AAAAAAAAAACTTCCCTACC-AATC-ACAAG--AAATCTGCATAGAGTCT  46

seq1  AAGTATTTTTTTCATGAACAGCTAAAATTGGAGATAAAAGGAAGTTACTA  100
      |||||||||||||||| |||||| ||||||||||||||||||||||||||
seq2  AAGTATTTTTTTCATG-ACAGCT-AAATTGGAGATAAAAGGAAGTTACTA  94

seq1  CACACTAGAAATGAAAAGGGAATCCAGGGTCTTAATGAGCCTTTCAAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTAGAAATGAAAAGGGAATCCAGGGTCTTAATGAGCCTTTCAAAGT  144

seq1  CCTGAAAGAGGATCTGATGGATCCTATAGCCTGGAGCCCCAGGAGAAGGC  200
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -CTGAAAGAGGATCTGATGGATCCTATAGCCTGGAGCCCCAGGAGAAGGC  193

seq1  CGAGTCCTAACAACTGCAAAGGTCAGTAGGGATGGCCACAGTGGGCACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTCCTAACAACTGCAAAGGTCAGTAGGGATGGCCACAGTGGGCACAT  243

seq1  AGCGGATAGCTGGTAATAGGTTCCCTGTTCTTCTCAAAGGTACCTAGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGATAGCTGGTAATAGGTTCCCTGTTCTTCTCAAAGGTACCTAGAAT  293

seq1  GTTAATGTTACCATATGCCACAACGATTCCCTATGAGTCAGTATATAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATGTTACCATATGCCACAACGATTCCCTATGAGTCAGTATATAAAG  343

seq1  CTTACAAAATATGTTCTCTAAACGCAACAGAAATCTACAACAAATGCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAAAATATGTTCTCTAAACGCAACAGAAATCTACAACAAATGCACA  393

seq1  CAAGCCATGAGATCCTTGCATTTTCCAACAAGAAGAAATTATCCACATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCATGAGATCCTTGCATTTTCCAACAAGAAGAAATTATCCACATCC  443

seq1  CAAGTCAAACTCCCTTGAGAAAGTAAACAATATTTTTAATAGATGCCAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCAAACTCCCTTGAGAAAGTAAACAATATTTTTAATAGATGCCAAC  493

seq1  AAATTTTATGCAGTAAAACTTGCGGATGTAACTAAACCATTGTTTGAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTATGCAGTAAAACTTGCGGATGTAACTAAACCATTGTTTGAAGA  543

seq1  CATTCATAGCTCTAAGTTTAGAATACTAAAAACATTAGAGGAAAAAGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATAGCTCTAAGTTTAGAATACTAAAAACATTAGAGGAAAAAGGCT  593

seq1  AAAAATCAATCAGTAGGAAATTCATCTTGAGATGTTGAAAAAAGAAACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCAATCAGTAGGAAATTCATCTTGAGATGTTGAAAAAAGAAACTA  643

seq1  TGTATCCAAACACATGCAGAGAGAAACAACAAAGGCATGATGAATAAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCCAAACACATGCAGAGAGAAACAACAAAGGCATGATGAATAAAGA  693

seq1  AAAAATATGCATTGCAAGACAAAAATAAAAGCAGCTCCTTGAAAAGATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATGCATTGCAAGACAAAAATAAAAGCAGCTCCTTGAAAAGATGA  743

seq1  GTTAAAACTTAAAATCCTCTCAAAGCCATGGAGGAAAATGAGAAAAATAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAACTTAAAATCCTCTCAAAGCCATGGAGGAAAATGAGAAAAATAG  793

seq1  TAAGTAACCAACAGTAGATTACTGTTAGGCATTAAATAGAATCCATTCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAACCAACAGTAGATTACTGTTAGGCATTAAATAGAATCCATTCTA  843

seq1  TTACAGAGCCTGTGGACATATGTTCTGTTTTTAATAATTAGAAGCTTGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGAGCCTGTGGACATATGTTCTGTTTTTAATAATTAGAAGCTTGTC  893

seq1  CCCTTGACGATTAATACAAATAGCACTTTATCTCCCTTCTATCATTTCCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGACGATTAATACAAATAGCACTTTATCTCCCTTCTATCATTTCCT  943

seq1  CCACACAACTTCAGTTTGACTGAGGAGACTAAATAAGAAACTAAACTGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACAACTTCAGTTTGACTGAGGAGACTAAATAAGAAACTAAACTGAA  993

seq1  CTAGTTTCTATAAAAACAGGTGGCCAGTACTATAGAATTC  1040
      ||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTTCTATAAAAACAGGTGGCCAGTACTATAGAATTC  1033

seq1: chr18_53031859_53032975
seq2: B6Ng01-144K18.g_68_1169

seq1  GAATTCAGTCATACTTATTAAGAAGCCAGACGTGAAGTTCAAAGAAATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCATACTTATTAAGAAGCCAGACGTGAAGTTCAAAGAAATCT  50

seq1  AATGCATCTTGTAATTCTTCATACGGATTGCTTTACATGGTAGTTAGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATCTTGTAATTCTTCATACGGATTGCTTTACATGGTAGTTAGATT  100

seq1  TTCTAAAAGCCAAATAACATCATTTTTATAAATAGAGTTGCATAGGTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAAAGCCAAATAACATCATTTTTATAAATAGAGTTGCATAGGTATT  150

seq1  GAGTAGGGGAACTGTCTGGCTAAATAAACCCACTTGTGAATTCACTAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGGGGAACTGTCTGGCTAAATAAACCCACTTGTGAATTCACTAAAG  200

seq1  AACACATTACAGTAAAAATAAATAAATAAATAAATATCCTAACCCTAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATTACAGTAAAAATAAATAAATAAATAAATATCCTAACCCTAATA  250

seq1  TATCTGATATGCAAAGCTTTTTTTTTAAACTGTAATCCATTTACTTAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGATATGCAAAGCTTTTTTTTTAAACTGTAATCCATTTACTTAGTA  300

seq1  AAATTTTATATGTTAAAAAATGTTTTATTTAACTTTGCTCCATGGTAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTATATGTTAAAAAATGTTTTATTTAACTTTGCTCCATGGTAAAG  350

seq1  TATGACTTCAAATTTGCACGGTAAATATTTGTTCCAAAGAAACCTAGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACTTCAAATTTGCACGGTAAATATTTGTTCCAAAGAAACCTAGGAG  400

seq1  ACTGGGGATGTACTTTTCTTTGGTTGTGCATGAAGCCATATCAGATCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGGATGTACTTTTCTTTGGTTGTGCATGAAGCCATATCAGATCAGA  450

seq1  ACTGAGTTTACTGCAACCAAAGTGAGAAAAGAGAAACTGAATCTGAAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGTTTACTGCAACCAAAGTGAGAAAAGAGAAACTGAATCTGAAGAA  500

seq1  AAAAACTCATCTCAGTAGAGTTGAGTTCTGTGTGTACCAAAAGCCAACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTCATCTCAGTAGAGTTGAGTTCTGTGTGTACCAAAAGCCAACAG  550

seq1  GTACTATGTTACTAGGTACTAGAGGTAAGAATTTGAACAAGACATAGTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTATGTTACTAGGTACTAGAGGTAAGAATTTGAACAAGACATAGTAC  600

seq1  CTGTTCCTAAGGAGATGATACACCCAGGAATTAAGACAGGTTACTGGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCCTAAGGAGATGATACACCCAGGAATTAAGACAGGTTACTGGTGA  650

seq1  TAACAGTGTCAGATGATAAAGTCAGTGTCTAGGCCTGTGACATAATCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGTGTCAGATGATAAAGTCAGTGTCTAGGCCTGTGACATAATCCAG  700

seq1  GGAACGATATGGTTAGCATGTTGTTATCCCTTGGAACCTATGTCAGATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACGATATGGTTAGCATGTTGTTATCCCTTGGAACCTATGTCAGATAT  750

seq1  CCTTTTAATGCCAGTGAATATTGGCCCCTGCCATATTTATAAAATGTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTAATGCCAGTGAATATTGGCCCCTGCCATATTTATAAAATGTCTT  800

seq1  AGTGTTTATGAAATGTAGTTCTCATTAGTTTTCCTAACTGATGGTGAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTATGAAATGTAGTTCTCATTAGTTTTCCTAACTGATGGTGAATG  850

seq1  ACAGAAT-ATTTCCTCATTATGTAATTGGATGACAGCATA-TTTTTTTAT  898
      ||||||| |||||||||||||||||||||||||||||||| |||||||||
seq2  ACAGAATAATTTCCTCATTATGTAATTGGATGACAGCATATTTTTTTTAT  900

seq1  TAATTGATATGCCCTATTGCTTGTTTTGATAGATTAAAAATTTTAGCACC  948
      |||||||||||||||||||||||||||||||||||  |||||||||||||
seq2  TAATTGATATGCCCTATTGCTTGTTTTGATAGATT--AAATTTTAGCACC  948

seq1  TGAAGGTTCCTAAGCAACACAGTTGCCATTAATTCAACCCTCATTGTGAG  998
      |||| ||| |||||| |||||||||||||  |||||||||||||||||||
seq2  TGAAAGTT-CTAAGC-ACACAGTTGCCAT--ATTCAACCCTCATTGTGAG  994

seq1  CAGCTAACATGAGGTGGGACTTATTCTTAAACTTCAGCTACCACGCTTGG  1048
      ||||| |||||||||||||||||||  | ||| ||||||| ||||||| |
seq2  CAGCT-ACATGAGGTGGGACTTATTTCTTAAC-TCAGCTA-CACGCTTTG  1041

seq1  CATCCTAAGATGCCACTAGTCTTCTGTTTTCGGGCCTTGTTTTGAACACA  1098
      ||| ||||||||||||||||||||||  |||||  |||||||   |||||
seq2  CAT-CTAAGATGCCACTAGTCTTCTG--TTCGG--CTTGTTT--GACACA  1084

seq1  -TGTAGCGACTGATAATATT  1117
       |||| |||||||| |||||
seq2  TTGTA-CGACTGAT-ATATT  1102