BAC Information

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BAC

Clone NameB6Ng01-145B04
Chromosome18 (Build37)
Map Location 56,413,092 - 56,620,913
singlet/doubletdoublet
Overlap geneLOC676543, LOC667432, Gramd3
Upstream geneLOC667401, LOC667409, LOC629043, LOC100043099, LOC629057, LOC100043104
Downstream geneLOC667458, Aldh7a1, Rnuxa, 1700065I17Rik, LOC675171, Lmnb1, March3, C330018D20Rik, Megf10, LOC672445, Prrc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-145B04.bB6Ng01-145B04.g
ACCDH942580DH942581
length6361,007
definitionDH942580|Mus musculus domesticus DNA, BAC clone: B6Ng01-145B04, 5' end.DH942581|Mus musculus domesticus DNA, BAC clone: B6Ng01-145B04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,413,092 - 56,413,727)(56,619,894 - 56,620,913)
sequence
gaattccaggaatggaactctgacagtcgagctcataccgcaaacacctt
acctaccaatcaatctccatagcccctgaatctatttttcaaattcttta
tgtacaagaccaagaacccacaaaaaaaagaccctatgctcttgattata
cgctccaatgattttctaatgtctctcattcaaaacaaattgctaatgcc
aagaagcgattcctgacaggagcctggtatgactgtcccctgagaggttc
tgccagtacctgatcaatacagatgcagatactcatagataaccattgga
ccccaatggaagagctagggaaaggactgaaggagctgaaggggtttgca
accccatacgaagaacagtatcaatcaactggaccacccagagttcccag
ggactaaaccaccaaccaaagagtacacatggagggagccatggctccag
ctgcacatgtagcagaggatgggcttgtctgacatcaatgggcaggaaag
cccttggtcctgtggaggcttgacaccccagtgtagggggatgctagagc
agtgaggcagaagtgcgtgtgtgggtggagaagcatcctcatagaggcaa
aggggagggaggagaaagggaatgtgatgggggagg
gaattcaaggtgtgcccgtgaaggacctttgtactcaggcaggcagtcca
gagcatgacacaagggagaaagatatcagaaagaccatcactgaaagatg
ctcaaacctgaagtacaggaaacaagggccccaggactggcctgggcccg
ggcacaccctcatccttctggggccaggcttgtcctcaagcaggggtcac
tctctatccatgaacgacaatgatctcagacagacttgtctagtgtcttt
cttgtatttatttccctctcttcccagtactagagattgaaccagagctt
aagcatgcttgctaaattacaaaatctgcccttgaatttgtaatcctcct
gcctcaccctctagagcagctgggtttgcaggctcatgctactagacttg
actgagctatcttttttttttttttttaagatttatttttccaggcagtg
gtggcgcatacctttaatcccagtacttgtgaggcagaggcaggaggatt
tttgtgagttcgaggccagtctggtctacagagcatgttctaggacagcc
aggacttcacagagaaaccctgtctcgaaaaaccaaaaaacaaacagaca
aacaaacaaaaaaccctaactttcagtacataacctggtcatagtttgta
agatccttcaggacttgccctttgaccttcctggtctttctgttgcttcc
acacctagcattaccacacctagccagccatgctgctagctcccaggagg
aacctctgcctgggctgctcggtcaggtggacactctcctcttcaagtct
ttaccagacaccttctcagtgaagccttatcattaacagtatccgagata
gaaaagtcaaaaggaaaatacaaaatctaataagaaaataagatgtttaa
gccaggtccttttgcattggatgataggggtttcaacagaagactgatca
ataccatacaactggaaaaagaacaacaacaaaaactaggttggatcttt
aagagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_56413092_56413727
seq2: B6Ng01-145B04.b_48_683

seq1  GAATTCCAGGAATGGAACTCTGACAGTCGAGCTCATACCGCAAACACCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGAATGGAACTCTGACAGTCGAGCTCATACCGCAAACACCTT  50

seq1  ACCTACCAATCAATCTCCATAGCCCCTGAATCTATTTTTCAAATTCTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACCAATCAATCTCCATAGCCCCTGAATCTATTTTTCAAATTCTTTA  100

seq1  TGTACAAGACCAAGAACCCACAAAAAAAAGACCCTATGCTCTTGATTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAAGACCAAGAACCCACAAAAAAAAGACCCTATGCTCTTGATTATA  150

seq1  CGCTCCAATGATTTTCTAATGTCTCTCATTCAAAACAAATTGCTAATGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCCAATGATTTTCTAATGTCTCTCATTCAAAACAAATTGCTAATGCC  200

seq1  AAGAAGCGATTCCTGACAGGAGCCTGGTATGACTGTCCCCTGAGAGGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGCGATTCCTGACAGGAGCCTGGTATGACTGTCCCCTGAGAGGTTC  250

seq1  TGCCAGTACCTGATCAATACAGATGCAGATACTCATAGATAACCATTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGTACCTGATCAATACAGATGCAGATACTCATAGATAACCATTGGA  300

seq1  CCCCAATGGAAGAGCTAGGGAAAGGACTGAAGGAGCTGAAGGGGTTTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAATGGAAGAGCTAGGGAAAGGACTGAAGGAGCTGAAGGGGTTTGCA  350

seq1  ACCCCATACGAAGAACAGTATCAATCAACTGGACCACCCAGAGTTCCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCATACGAAGAACAGTATCAATCAACTGGACCACCCAGAGTTCCCAG  400

seq1  GGACTAAACCACCAACCAAAGAGTACACATGGAGGGAGCCATGGCTCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTAAACCACCAACCAAAGAGTACACATGGAGGGAGCCATGGCTCCAG  450

seq1  CTGCACATGTAGCAGAGGATGGGCTTGTCTGACATCAATGGGCAGGAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACATGTAGCAGAGGATGGGCTTGTCTGACATCAATGGGCAGGAAAG  500

seq1  CCCTTGGTCCTGTGGAGGCTTGACACCCCAGTGTAGGGGGATGCTAGAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGGTCCTGTGGAGGCTTGACACCCCAGTGTAGGGGGATGCTAGAGC  550

seq1  AGTGAGGCAGAAGTGCGTGTGTGGGTGGAGAAGCATCCTCATAGAGGCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGGCAGAAGTGCGTGTGTGGGTGGAGAAGCATCCTCATAGAGGCAA  600

seq1  AGGGGAGGGAGGAGAAAGGGAATGTGATGGGGGAGG  636
      ||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGGGAGGAGAAAGGGAATGTGATGGGGGAGG  636

seq1: chr18_56619894_56620913
seq2: B6Ng01-145B04.g_69_1075 (reverse)

seq1  TTCT-TTAATGATCCATACCTAGTTTTTTTGTTTGTTTGTTTCTTTTTTC  49
      |||| |||| |||||| ||||||||||| |  |||||       ||||||
seq2  TTCTCTTAAAGATCCA-ACCTAGTTTTTGTTGTTGTT------CTTTTTC  43

seq1  CAGTTGTTATTGTTATTGATCATGTCTTCTGTTTGAAACCCCTATTCATT  99
      |||||||   || ||||||||| |||||||| |||||||||||| |||| 
seq2  CAGTTGT--ATGGTATTGATCA-GTCTTCTG-TTGAAACCCCTA-TCATC  88

seq1  CAATGCAAAAGGACCTGGCTTATACATCTTAATTTTCTTATTTGATTTTG  149
      |||||||||||||||||||||| ||||||| ||||||||||| |||||||
seq2  CAATGCAAAAGGACCTGGCTTAAACATCTT-ATTTTCTTATTAGATTTTG  137

seq1  TATTTTTCCTTTTGACTTTTTCTATCTC-GATACTGTTAATGATAAGGCT  198
      || ||||||||||||| ||||||||||| |||||||||||||||||||||
seq2  TA-TTTTCCTTTTGAC-TTTTCTATCTCGGATACTGTTAATGATAAGGCT  185

seq1  TCACTGAGAAGGTGTCTGGTAAAGACTTGAAGAGGAGAGTGTCCACCTGA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGAGAAGGTGTCTGGTAAAGACTTGAAGAGGAGAGTGTCCACCTGA  235

seq1  CCGAGCAGCCCAGGCAGAGGTTCCTCCTGGGAGCTAGCAGCATGGCTGGC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGCAGCCCAGGCAGAGGTTCCTCCTGGGAGCTAGCAGCATGGCTGGC  285

seq1  TAGGTGTGGTAATGCTAGGTGTGGAAGCAACAGAAAGACCAGGAAGGTCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGTGGTAATGCTAGGTGTGGAAGCAACAGAAAGACCAGGAAGGTCA  335

seq1  AAGGGCAAGTCCTGAAGGATCTTACAAACTATGACCAGGTTATGTACTGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCAAGTCCTGAAGGATCTTACAAACTATGACCAGGTTATGTACTGA  385

seq1  AAGTTAGGGTTTTTTGTTTGTTTGTCTGTTTGTTTTTTGGTTTTTCGAGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAGGGTTTTTTGTTTGTTTGTCTGTTTGTTTTTTGGTTTTTCGAGA  435

seq1  CAGGGTTTCTCTGTGAAGTCCTGGCTGTCCTAGAACATGCTCTGTAGACC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTTCTCTGTGAAGTCCTGGCTGTCCTAGAACATGCTCTGTAGACC  485

seq1  AGACTGGCCTCGAACTCACAAAAATCCTCCTGCCTCTGCCTCACAAGTAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGGCCTCGAACTCACAAAAATCCTCCTGCCTCTGCCTCACAAGTAC  535

seq1  TGGGATTAAAGGTATGCGCCACCACTGCCTGGAAAAATAAATCTTAAAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTAAAGGTATGCGCCACCACTGCCTGGAAAAATAAATCTTAAAAA  585

seq1  AAAAAAAAAAAGATAGCTCAGTCAAGTCTAGTAGCATGAGCCTGCAAACC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAGATAGCTCAGTCAAGTCTAGTAGCATGAGCCTGCAAACC  635

seq1  CAGCTGCTCTAGAGGGTGAGGCAGGAGGATTACAAATTCAAGGGCAGATT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCTCTAGAGGGTGAGGCAGGAGGATTACAAATTCAAGGGCAGATT  685

seq1  TTGTAATTTAGCAAGCATGCTTAAGCTCTGGTTCAATCTCTAGTACTGGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAATTTAGCAAGCATGCTTAAGCTCTGGTTCAATCTCTAGTACTGGG  735

seq1  AAGAGAGGGAAATAAATACAAGAAAGACACTAGACAAGTCTGTCTGAGAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGGGAAATAAATACAAGAAAGACACTAGACAAGTCTGTCTGAGAT  785

seq1  CATTGTCGTTCATGGATAGAGAGTGACCCCTGCTTGAGGACAAGCCTGGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTCGTTCATGGATAGAGAGTGACCCCTGCTTGAGGACAAGCCTGGC  835

seq1  CCCAGAAGGATGAGGGTGTGCCCGGGCCCAGGCCAGTCCTGGGGCCCTTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAAGGATGAGGGTGTGCCCGGGCCCAGGCCAGTCCTGGGGCCCTTG  885

seq1  TTTCCTGTACTTCAGGTTTGAGCATCTTTCAGTGATGGTCTTTCTGATAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGTACTTCAGGTTTGAGCATCTTTCAGTGATGGTCTTTCTGATAT  935

seq1  CTTTCTCCCTTGTGTCATGCTCTGGACTGCCTGCCTGAGTACAAAGGTCC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCCCTTGTGTCATGCTCTGGACTGCCTGCCTGAGTACAAAGGTCC  985

seq1  TTCACGGGCACACCTTGAATTC  1020
      ||||||||||||||||||||||
seq2  TTCACGGGCACACCTTGAATTC  1007