BAC Information

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BAC

Clone NameB6Ng01-145J12
Chromosome18 (Build37)
Map Location 19,962,819 - 20,118,899
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040658, LOC665624, LOC665629
Downstream geneDsc3, Dsc2, Dsc1, Dsg1c, Dsg1a, Dsg1b, Dsg4, LOC435558, Dsg3, Tpi-rs10, Dsg2, Ttr, LOC100040823, B4galt6, D030074E01Rik, Rnf125
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-145J12.bB6Ng01-145J12.g
ACCDH942957DH942958
length975362
definitionDH942957|Mus musculus domesticus DNA, BAC clone: B6Ng01-145J12, 5' end.DH942958|Mus musculus domesticus DNA, BAC clone: B6Ng01-145J12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,962,819 - 19,963,626)(20,118,532 - 20,118,899)
sequence
gaattctggttctttagtgtgagctaaagtgaagaaaaaaaaagtaattg
tattccttgttactacctacttgtatggaaaaattacctaaaagtggctc
cgtcagagcaatagcagttacttattttgtaaaacactgactgttgattg
tggcttctttcttcttcatactgatagctggagacttacacagaggaaat
tctcaatgagcctaagtagctcatggctgaaacaccggactgatgtgtat
tatacccttaatctagtctctgacaccacaaaggaagcaaaatcaagcat
aaaggaaagtaaaataatttaattaaaaagataatctcttatgtgaattg
gcagctttgaactaagcctttaatgtagagtgatatttttactatgacaa
cagttctgccacatatggctcattatgtttggttacttaacaaaataaac
aaactaacattattttaagagaaaaaatgatattaattactgctatagat
ataattcaggctttgaaacaaagccaattttcaaaaaccagttatcactg
aaaacataacttctcaataattaacgttgataagattgacagagataatt
ttaaaatacactaaaaatgagatatgaaaacatctagaaaatctatataa
ctcaatgaattaatattttacataattaatgcacaaagccataatatcac
tctataacagcatcaactaaacatgggtgatagctcaatagattttaata
tagtacaatttgaaaagtttattgatatgcttccagattccacattatta
ctaacactatgaagaaaatcacttgtaaatcctggagaaaaatatttgca
attgctgaaaagatggttaaaaattattctaatattctccatatgtattt
tttcttttggtgcctggttttcatcacataatttcaaagccatttatcat
gaaatggcaggaataatctcaccta
tctaggcaggaaaggctggtgtgttctctttattcagctccctcttcccc
acagcttctcttccagtatccacaagagggtgtgggacacacccttcaat
gactcagacttctcctgttctcaggatgagcacattgacgtgactcacat
actggcgtgcctacacatacttccccaagctgaagcacctacatctactc
tgggaccccgaatattgaacttcagcagagaaacctgcatcctttctcat
ttataatccttgactcctgtgggaaatgtaacccttgtggggagaaagca
tttttatgtctatgtaagatttactctgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_19962819_19963626
seq2: B6Ng01-145J12.b_47_854

seq1  GAATTCTGGTTCTTTAGTGTGAGCTAAAGTGAAGAAAAAAAAAGTAATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGTTCTTTAGTGTGAGCTAAAGTGAAGAAAAAAAAAGTAATTG  50

seq1  TATTCCTTGTTACTACCTACTTGTATGGAAAAATTACCTAAAAGTGGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTTGTTACTACCTACTTGTATGGAAAAATTACCTAAAAGTGGCTC  100

seq1  CGTCAGAGCAATAGCAGTTACTTATTTTGTAAAACACTGACTGTTGATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCAGAGCAATAGCAGTTACTTATTTTGTAAAACACTGACTGTTGATTG  150

seq1  TGGCTTCTTTCTTCTTCATACTGATAGCTGGAGACTTACACAGAGGAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCTTTCTTCTTCATACTGATAGCTGGAGACTTACACAGAGGAAAT  200

seq1  TCTCAATGAGCCTAAGTAGCTCATGGCTGAAACACCGGACTGATGTGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAATGAGCCTAAGTAGCTCATGGCTGAAACACCGGACTGATGTGTAT  250

seq1  TATACCCTTAATCTAGTCTCTGACACCACAAAGGAAGCAAAATCAAGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCCTTAATCTAGTCTCTGACACCACAAAGGAAGCAAAATCAAGCAT  300

seq1  AAAGGAAAGTAAAATAATTTAATTAAAAAGATAATCTCTTATGTGAATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAAGTAAAATAATTTAATTAAAAAGATAATCTCTTATGTGAATTG  350

seq1  GCAGCTTTGAACTAAGCCTTTAATGTAGAGTGATATTTTTACTATGACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTTTGAACTAAGCCTTTAATGTAGAGTGATATTTTTACTATGACAA  400

seq1  CAGTTCTGCCACATATGGCTCATTATGTTTGGTTACTTAACAAAATAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTGCCACATATGGCTCATTATGTTTGGTTACTTAACAAAATAAAC  450

seq1  AAACTAACATTATTTTAAGAGAAAAAATGATATTAATTACTGCTATAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAACATTATTTTAAGAGAAAAAATGATATTAATTACTGCTATAGAT  500

seq1  ATAATTCAGGCTTTGAAACAAAGCCAATTTTCAAAAACCAGTTATCACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTCAGGCTTTGAAACAAAGCCAATTTTCAAAAACCAGTTATCACTG  550

seq1  AAAACATAACTTCTCAATAATTAACGTTGATAAGATTGACAGAGATAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATAACTTCTCAATAATTAACGTTGATAAGATTGACAGAGATAATT  600

seq1  TTAAAATACACTAAAAATGAGATATGAAAACATCTAGAAAATCTATATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATACACTAAAAATGAGATATGAAAACATCTAGAAAATCTATATAA  650

seq1  CTCAATGAATTAATATTTTACATAATTAATGCACAAAGCCATAATATCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATGAATTAATATTTTACATAATTAATGCACAAAGCCATAATATCAC  700

seq1  TCTATAACAGCATCAACTAAACATGGGTGATAGCTCAATAGATTTTAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAACAGCATCAACTAAACATGGGTGATAGCTCAATAGATTTTAATA  750

seq1  TAGTACAATTTGAAAAGTTTATTGATATGCTTCCAGATTCCACATTATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACAATTTGAAAAGTTTATTGATATGCTTCCAGATTCCACATTATTA  800

seq1  CTAACACT  808
      ||||||||
seq2  CTAACACT  808

seq1: chr18_20118532_20118899
seq2: B6Ng01-145J12.g_68_435 (reverse)

seq1  CACACACACACACACACACACACACACACACACACAGAGTAAATCTTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACAGAGTAAATCTTACA  50

seq1  TAGACATAAAAATGCTTTCTCCCCACAAGGGTTACATTTCCCACAGGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACATAAAAATGCTTTCTCCCCACAAGGGTTACATTTCCCACAGGAGT  100

seq1  CAAGGATTATAAATGAGAAAGGATGCAGGTTTCTCTGCTGAAGTTCAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGATTATAAATGAGAAAGGATGCAGGTTTCTCTGCTGAAGTTCAATA  150

seq1  TTCGGGGTCCCAGAGTAGATGTAGGTGCTTCAGCTTGGGGAAGTATGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGGGTCCCAGAGTAGATGTAGGTGCTTCAGCTTGGGGAAGTATGTGT  200

seq1  AGGCACGCCAGTATGTGAGTCACGTCAATGTGCTCATCCTGAGAACAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACGCCAGTATGTGAGTCACGTCAATGTGCTCATCCTGAGAACAGGA  250

seq1  GAAGTCTGAGTCATTGAAGGGTGTGTCCCACACCCTCTTGTGGATACTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCTGAGTCATTGAAGGGTGTGTCCCACACCCTCTTGTGGATACTGG  300

seq1  AAGAGAAGCTGTGGGGAAGAGGGAGCTGAATAAAGAGAACACACCAGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAGCTGTGGGGAAGAGGGAGCTGAATAAAGAGAACACACCAGCCT  350

seq1  TTCCTGCCTAGAGAATTC  368
      ||||||||||||||||||
seq2  TTCCTGCCTAGAGAATTC  368