BAC Information

Click to search

BAC

Clone NameB6Ng01-145N14
Chromosome18 (Build37)
Map Location 34,786,221 - 34,894,401
singlet/doubletdoublet
Overlap geneKif20a, Cdc23, Gfra3, Cdc25c
Upstream geneLOC100041258, Epb4.1l4a, EG666296, Ppia-ps18_318.1, Ppia-ps18_319.1, LOC666313, Apc, Srp19, Reep5, Pkd2l2, 2610024E20Rik, Wnt8a, Nme5, 4933408B17Rik, Brd8
Downstream geneLOC100041859, 2810012G03Rik, LOC100041879, LOC100041887, Jmjd1b, Reep2, Egr1, Etf1, Hspa9, LOC100041377, EG626954, LOC100041951, Ctnna1, Lrrtm2, Sil1, LOC100041423, LOC666460, LOC666462, EG383341, EG436583, Matr3, Paip2, Slc23a1, 2010001M09Rik, Gm1614, 5133400G04Rik, Dnajc18, 1110006O17Rik, 1700066B19Rik, 2610307O08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-145N14.bB6Ng01-145N14.g
ACCDH943142DH943143
length956719
definitionDH943142|Mus musculus domesticus DNA, BAC clone: B6Ng01-145N14, 5' end.DH943143|Mus musculus domesticus DNA, BAC clone: B6Ng01-145N14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,786,221 - 34,787,171)(34,893,683 - 34,894,401)
sequence
gaattcatgtgtgctagaatgatgtggaaccaaagaatggctgcacagga
ccacttaacgcttactgaggaatgagggagcagaagcatgcttcctagga
tctaggctgtttgtcctggcttacaggttaactcgagaatctgttacagg
ctctactggaggacacctcagagaaggtgaaagtttaccttcgaattcga
ccattcttgacttcagagttggaccgacaggaagatcaggtaggatttaa
ggtggatttaaggttgtagtaggagaggctcccaggagtgctcctttact
cggtaaaccctgctttctacctttccagggctgcgtctgcattgagaata
cagaaacccttgtgctgcaggcacccaaagactcctttgccttgaagagt
aatgagaggggagttggtcaggccactcacaaatttaccttttcccaggt
atgcaatactgctgtacgaacatttaggaaatgtatttcttctttaaaag
atttctactcgagtgtgggttctttacgtgtctgtatctgtaattttaag
acctttttatgtgctagtcagtgtgtgggatacttttatgtacatgagat
accactgatgttattactattactcttctccctggtaagaatacgatggc
acatattgcagtgacggggattttgctgaagctatagcgctattcagtgg
taaagacagagctgagatttgggatctaccgtctccaaacccatgcttac
acccaactgtacaaccccgtgtgtgtgcacagcactacacttaacagcat
ttccttagtgtttcattaggatgaactgaactagcccgggcgatggaggc
tttagcatttaggaacaactggagtccatcaggaaagctctgcttgagca
tgcttccagggaggattgtagctacttcttccggtcccaggagacggagg
gcagaa
gaattctcctccgagagaggccctcgaatgtgagtgtctgcatgagttga
agccggggatggaaacggatcttgagtgagacgtggcacacctgtttgga
cagagatgaacctaaatgaatgcctgccactgcagttccatgagcattag
ggtgatcgaaggaaggtgttcttacagttcaaaagaattgggcattggca
atgtaactccgctggcagagtacttgcctagaatatttagtccttgggct
tgatccccaatattgcataaagctgggcgtaattatacatccctatgatc
ccaacacagaaaagtaagggagtcgtggtgtgtcagggatacacaagcag
gaagatcagaaatttaaggttctaaatcagtctgagctagagatcctgtc
tcaaaaaaaaaaaaaagatccagacatggtggtccatgccgataatccca
gcccttaggagtcagaggcagatagataactgagtttgagaccagcctgg
tctacatagtgagaccctgtttcaaaaacaaaacaaaacaaaacaaaaca
atgaaaaacccatgtaaaacacacacacacacacacaaagggatttgggg
atgaagcttcaatagaggaaagggaagagtgtcactggaccttggttggt
aaacatggtgagagcctgtgtgtattggggtgggggtggctgtggattaa
acctgggtcttctgccagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_34786221_34787171
seq2: B6Ng01-145N14.b_36_991

seq1  GAATTCATGTGTGCTAGAATGATGTGGAACCAAAGAATGGCTGCACAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTGTGCTAGAATGATGTGGAACCAAAGAATGGCTGCACAGGA  50

seq1  CCACTTAACGCTTACTGAGGAATGAGGGAGCAGAAGCATGCTTCCTAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTAACGCTTACTGAGGAATGAGGGAGCAGAAGCATGCTTCCTAGGA  100

seq1  TCTAGGCTGTTTGTCCTGGCTTACAGGTTAACTCGAGAATCTGTTACAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGCTGTTTGTCCTGGCTTACAGGTTAACTCGAGAATCTGTTACAGG  150

seq1  CTCTACTGGAGGACACCTCAGAGAAGGTGAAAGTTTACCTTCGAATTCGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACTGGAGGACACCTCAGAGAAGGTGAAAGTTTACCTTCGAATTCGA  200

seq1  CCATTCTTGACTTCAGAGTTGGACCGACAGGAAGATCAGGTAGGATTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCTTGACTTCAGAGTTGGACCGACAGGAAGATCAGGTAGGATTTAA  250

seq1  GGTGGATTTAAGGTTGTAGTAGGAGAGGCTCCCAGGAGTGCTCCTTTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGATTTAAGGTTGTAGTAGGAGAGGCTCCCAGGAGTGCTCCTTTACT  300

seq1  CGGTAAACCCTGCTTTCTACCTTTCCAGGGCTGCGTCTGCATTGAGAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTAAACCCTGCTTTCTACCTTTCCAGGGCTGCGTCTGCATTGAGAATA  350

seq1  CAGAAACCCTTGTGCTGCAGGCACCCAAAGACTCCTTTGCCTTGAAGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACCCTTGTGCTGCAGGCACCCAAAGACTCCTTTGCCTTGAAGAGT  400

seq1  AATGAGAGGGGAGTTGGTCAGGCCACTCACAAATTTACCTTTTCCCAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGAGGGGAGTTGGTCAGGCCACTCACAAATTTACCTTTTCCCAGGT  450

seq1  ATGCAATACTGCTGTACGAACATTTAGGAAATGTATTTCTTCTTTAAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAATACTGCTGTACGAACATTTAGGAAATGTATTTCTTCTTTAAAAG  500

seq1  ATTTCTACTCGAGTGTGGGTTCTTTACGTGTCTGTATCTGTAATTTTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTACTCGAGTGTGGGTTCTTTACGTGTCTGTATCTGTAATTTTAAG  550

seq1  ACCTTTTTATGTGCTAGTCAGTGTGTGGGATACTTTTATGTACATGAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTTTATGTGCTAGTCAGTGTGTGGGATACTTTTATGTACATGAGAT  600

seq1  ACCACTGATGTTATTACTATTACTCTTCTCCCTGGTAAGAATACGATGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGATGTTATTACTATTACTCTTCTCCCTGGTAAGAATACGATGGC  650

seq1  ACATATTGCAGTGACGGGGATTTTGCTGAAGCTATAGCGCTATTCAGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTGCAGTGACGGGGATTTTGCTGAAGCTATAGCGCTATTCAGTGG  700

seq1  TAAAGACAGAGCTGAGATTT-GGATCTACCGTCTCCAAACCCATGCTTAC  749
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TAAAGACAGAGCTGAGATTTGGGATCTACCGTCTCCAAACCCATGCTTAC  750

seq1  ACCCAACTGTACAACCCCGTGTGTGTGCACAGCACTACACTTAACAGCAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAACTGTACAACCCCGTGTGTGTGCACAGCACTACACTTAACAGCAT  800

seq1  TCCTTAAGTGTTTCATTAGGATGAACTGAACTAGCCGGGGCGATGGAGGC  849
      | | | |||||||||||||||||||||||||||||| |||||||||||||
seq2  TTCCTTAGTGTTTCATTAGGATGAACTGAACTAGCCCGGGCGATGGAGGC  850

seq1  TTTAGCATTTAGGAACAACTGGAGTCCATCAGGAAAGC-CTGCTTGAGCA  898
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTTAGCATTTAGGAACAACTGGAGTCCATCAGGAAAGCTCTGCTTGAGCA  900

seq1  GGC-TCCAGGGAGGATTGTAGCTAC-TCGTCCGGT-CCAGGAGACGGAGG  945
       || ||||||||||||||||||||| || |||||| ||||||||||||||
seq2  TGCTTCCAGGGAGGATTGTAGCTACTTCTTCCGGTCCCAGGAGACGGAGG  950

seq1  GCAGAA  951
      ||||||
seq2  GCAGAA  956

seq1: chr18_34893683_34894401
seq2: B6Ng01-145N14.g_68_786 (reverse)

seq1  CCTGGCAGAAGACCCAGGTTTAATCCACAGCCACCCCCACCCCAATACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCAGAAGACCCAGGTTTAATCCACAGCCACCCCCACCCCAATACAC  50

seq1  ACAGGCTCTCACCATGTTTACCAACCAAGGTCCAGTGACACTCTTCCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCTCTCACCATGTTTACCAACCAAGGTCCAGTGACACTCTTCCCTT  100

seq1  TCCTCTATTGAAGCTTCATCCCCAAATCCCTTTGTGTGTGTGTGTGTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTATTGAAGCTTCATCCCCAAATCCCTTTGTGTGTGTGTGTGTGTG  150

seq1  TTTTACATGGGTTTTTCATTGTTTTGTTTTGTTTTGTTTTGTTTTTGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACATGGGTTTTTCATTGTTTTGTTTTGTTTTGTTTTGTTTTTGAAA  200

seq1  CAGGGTCTCACTATGTAGACCAGGCTGGTCTCAAACTCAGTTATCTATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTCTCACTATGTAGACCAGGCTGGTCTCAAACTCAGTTATCTATCT  250

seq1  GCCTCTGACTCCTAAGGGCTGGGATTATCGGCATGGACCACCATGTCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGACTCCTAAGGGCTGGGATTATCGGCATGGACCACCATGTCTGG  300

seq1  ATCTTTTTTTTTTTTTTGAGACAGGATCTCTAGCTCAGACTGATTTAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTTTTTTTTTTTGAGACAGGATCTCTAGCTCAGACTGATTTAGAA  350

seq1  CCTTAAATTTCTGATCTTCCTGCTTGTGTATCCCTGACACACCACGACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAATTTCTGATCTTCCTGCTTGTGTATCCCTGACACACCACGACTC  400

seq1  CCTTACTTTTCTGTGTTGGGATCATAGGGATGTATAATTACGCCCAGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACTTTTCTGTGTTGGGATCATAGGGATGTATAATTACGCCCAGCTT  450

seq1  TATGCAATATTGGGGATCAAGCCCAAGGACTAAATATTCTAGGCAAGTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAATATTGGGGATCAAGCCCAAGGACTAAATATTCTAGGCAAGTAC  500

seq1  TCTGCCAGCGGAGTTACATTGCCAATGCCCAATTCTTTTGAACTGTAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCAGCGGAGTTACATTGCCAATGCCCAATTCTTTTGAACTGTAAGA  550

seq1  ACACCTTCCTTCGATCACCCTAATGCTCATGGAACTGCAGTGGCAGGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTTCCTTCGATCACCCTAATGCTCATGGAACTGCAGTGGCAGGCAT  600

seq1  TCATTTAGGTTCATCTCTGTCCAAACAGGTGTGCCACGTCTCACTCAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTAGGTTCATCTCTGTCCAAACAGGTGTGCCACGTCTCACTCAAGA  650

seq1  TCCGTTTCCATCCCCGGCTTCAACTCATGCAGACACTCACATTCGAGGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTTTCCATCCCCGGCTTCAACTCATGCAGACACTCACATTCGAGGGC  700

seq1  CTCTCTCGGAGGAGAATTC  719
      |||||||||||||||||||
seq2  CTCTCTCGGAGGAGAATTC  719