BAC Information

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BAC

Clone NameB6Ng01-146C04
Chromosome18 (Build37)
Map Location 27,040,651 - 27,185,606
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041274
Downstream geneEG665977, EG665646
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146C04.bB6Ng01-146C04.g
ACCDH943358DH943359
length1,1671,022
definitionDH943358|Mus musculus domesticus DNA, BAC clone: B6Ng01-146C04, 5' end.DH943359|Mus musculus domesticus DNA, BAC clone: B6Ng01-146C04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,040,651 - 27,041,849)(27,184,573 - 27,185,606)
sequence
gaattcagctgtttataaacaactgggtttgttctgggtttattcagttg
aatgcaaagttagccacccattgaggtttggaactcaattgaagttgggg
tttcagttgccccatttcttatacttttagcaaataaattggaaactctg
ggagtccagccactcacacatgataaaattaatttgtatctactaaaagc
atagtttgcatgccatcactgtagggagacagtgagtactatgatgaatg
aatggattgtacataccatgtaatgaaataggaatcatctggtcttacaa
gtcgaggggatgacttaaatttgtaaggatatgtatccaatttctataaa
attcatttgtataaaaacaaagggtctcttgttatagtatgaacatgttg
actgggtaggtcatgattttagcagtacagatctgagatacttgaaactc
agagtgtgaagtactgtgggaaaatgaatatattttccttaaggataaag
gaagttctaggctcctcccaactagctattcaagtcttagtgtatcatgt
tacattgaatcagaaactttgatgtgaagtttatctgggtcagcataagc
agagttggcagcaaagaatgcaaggatccttatagggaacaaaggtacag
agaacaggagatggagagagggcagtggagtaggccaaggaaatcaactt
catcatctctgtcaaccccattttctatgacaatttgtccattataaggt
ggcaaatttaatagaacccaagatgtatgtgtactcaaaggttagtatga
agataattttctacttagtgcacacagcagaaattaaaaagtagttttaa
tgccattataagaaaccccgaaaaaggcatccattgatgtgcaaaatttg
taagttacgctgatatttgttcaccagacaagcatgaaggtatcttggtt
taaagccacagcatcagaaatgagacatgaaaagaaacaaccactaaact
aaaaaaaaaaaataatataatatatataagcatttgattcatagagatgc
atagactaggatctatttattaacctagtactaacagtctaccactgagc
tttagaataaaaggcttagctgaatttttttttttttggacaatgagcac
atttactacaggtttgc
gaattcttagtagttttcaagaccattgttcttgttcacccaacttcctc
ttcaattctaagtctctctctgcaaacactacctcggagtgtgaccatgg
tgcggtattaagctacggtgtcttccctgaccttttgatatattctgtaa
gttccctttaaactatgtacaaaggaaaattctctaggaagaaacatgtt
ggtgtctttctcgtccagagaaaggcaaagaaatgttccatgaacatttg
ttgaattagaagaaaatgaaaaagttacaaagagaataggagccagagga
tggtagcctctgctctgaaatgtacacttgatgaattttgtctaaatttc
tcattagtctttcagcagttacttttgtaagaagtcagcaaacaaatgaa
agcctctctcgtgcttaagcagttataaaaaccaggcttagttagtcccc
agtgatggcctacagcctttggtacgctcatctgggactgatcgttataa
ctctgctctagacaccactgcaaaaaaataaaaaagcaaaaccatcattt
ttcactagtcagaacaataaaattgcagggctgtggttctaaaaaaaatt
aagtctcagactacactgaagaaaaaaaaaaaaacctcttattcttctaa
agctattttataatgtaaaattaatgatgcagcttaaaataagatttctg
cttgtattagtaaatatacttcaattttccatggtagaaatatttattct
ttattacatttacaaatcccctctcaatatatatgtaaactatacataat
atatatatattatgtacacatacattatacaagtgtgtatacatactata
tacatatatatgcatatataatgcatatacatatgtgtgtatagtaccac
tcctacatgtcctatgacaaagagcttgtttgaaatggcattttcatgtc
tagtagcttttgttgacagaaaaaaaaaataatcctctcatgatcctagc
acatacaagcatcttaaagcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_27040651_27041849
seq2: B6Ng01-146C04.b_46_1212

seq1  GAATTCAGCTGTTTATAAACAACTGGGTTTGTTCTGGGTTTATTCAGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTGTTTATAAACAACTGGGTTTGTTCTGGGTTTATTCAGTTG  50

seq1  AATGCAAAGTTAGCCACCCATTGAGGTTTGGAACTCAATTGAAGTTGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAAAGTTAGCCACCCATTGAGGTTTGGAACTCAATTGAAGTTGGGG  100

seq1  TTTCAGTTGCCCCATTTCTTATACTTTTAGCAAATAAATTGGAAACTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTTGCCCCATTTCTTATACTTTTAGCAAATAAATTGGAAACTCTG  150

seq1  GGAGTCCAGCCACTCACACATGATAAAATTAATTTGTATCTACTAAAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCCAGCCACTCACACATGATAAAATTAATTTGTATCTACTAAAAGC  200

seq1  ATAGTTTGCATGCCATCACTGTAGGGAGACAGTGAGTACTATGATGAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTGCATGCCATCACTGTAGGGAGACAGTGAGTACTATGATGAATG  250

seq1  AATGGATTGTACATACCATGTAATGAAATAGGAATCATCTGGTCTTACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGATTGTACATACCATGTAATGAAATAGGAATCATCTGGTCTTACAA  300

seq1  GTCGAGGGGATGACTTAAATTTGTAAGGATATGTATCCAATTTCTATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGAGGGGATGACTTAAATTTGTAAGGATATGTATCCAATTTCTATAAA  350

seq1  ATTCATTTGTATAAAAACAAAGGGTCTCTTGTTATAGTATGAACATGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTTGTATAAAAACAAAGGGTCTCTTGTTATAGTATGAACATGTTG  400

seq1  ACTGGGTAGGTCATGATTTTAGCAGTACAGATCTGAGATACTTGAAACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGTAGGTCATGATTTTAGCAGTACAGATCTGAGATACTTGAAACTC  450

seq1  AGAGTGTGAAGTACTGTGGGAAAATGAATATATTTTCCTTAAGGATAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGTGAAGTACTGTGGGAAAATGAATATATTTTCCTTAAGGATAAAG  500

seq1  GAAGTTCTAGGCTCCTCCCAACTAGCTATTCAAGTCTTAGTGTATCATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTCTAGGCTCCTCCCAACTAGCTATTCAAGTCTTAGTGTATCATGT  550

seq1  TACATTGAATCAGAAACTTTGATGTGAAGTTTATCTGGGTCAGCATAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTGAATCAGAAACTTTGATGTGAAGTTTATCTGGGTCAGCATAAGC  600

seq1  AGAGTTGGCAGCAAAGAATGCAAGGATCCTTATAGGGAACAAAGGTACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTGGCAGCAAAGAATGCAAGGATCCTTATAGGGAACAAAGGTACAG  650

seq1  AGAACAGGAGATGGAGAGAGGGCAGTGGAGTAGGCCAAGGAAATCAACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGGAGATGGAGAGAGGGCAGTGGAGTAGGCCAAGGAAATCAACTT  700

seq1  CATCATCTCTGTCAACCCCATTTTCTATGACAATTTGTCCATTATAAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATCTCTGTCAACCCCATTTTCTATGACAATTTGTCCATTATAAGGT  750

seq1  GGCAAATTTAATAGAACCCAAGATGTATGTGTACTCAAAGGTTAGTATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAATTTAATAGAACCCAAGATGTATGTGTACTCAAAGGTTAGTATGA  800

seq1  AGATAATTTTCTACTTAGTGCACACAGCAGAAATTAAAAAGTAGTTTTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATTTTCTACTTAGTGCACACAGCAGAAATTAAAAAGTAGTTTTAA  850

seq1  TGCCATTATAAGAAACCCCGAAAAAGGCATCCATTGATGTGCAAAATTTT  900
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGCCATTATAAGAAACCCCGAAAAAGGCATCCATTGATGTGCAAAA-TTT  899

seq1  GTAAGTTACGCTGATATTTGTTCACCAGACAAGCATGAAGGTATCTTGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTTACGCTGATATTTGTTCACCAGACAAGCATGAAGGTATCTTGGT  949

seq1  TTAAAAGCCACAGCATCAGAAATGAAGACATGAAAAAGAAACAAACCACC  1000
      || ||||||||||||||||||||| ||||||| ||||||||| |||||| 
seq2  TT-AAAGCCACAGCATCAGAAATG-AGACATG-AAAAGAAAC-AACCACT  995

seq1  AAACTAAAAAAAAAAAAAATAATAATAATAATAATAATAAAGCATTTGAA  1050
      |||||||||||||||     |||||| ||||| |||   ||||||||| |
seq2  AAACTAAAAAAAAAA-----AATAAT-ATAAT-ATATATAAGCATTTG-A  1037

seq1  TTCATTAGAAGATGGCATAGACTAAGAATCTATTTATTAACCTAAGTACT  1100
      |||| ||| |||| ||||||||| || |||||||||||||||| ||||||
seq2  TTCA-TAG-AGAT-GCATAGACT-AGGATCTATTTATTAACCT-AGTACT  1082

seq1  AAACAGTCTACACACTGAAGCCTTTAGATTAAAAGGCATAAGGGCTTGAT  1150
       |||||||||| ||||||   ||||||| |||||||| ||   |||    
seq2  -AACAGTCTAC-CACTGA--GCTTTAGAATAAAAGGCTTA---GCT---G  1122

seq1  ATTTTTTTTTTTTTTGGACCAATGAGCTTTCTATTTACTACAGTTTTGC  1199
      | |||||||||||||||| ||||||||     ||||||||||| |||||
seq2  AATTTTTTTTTTTTTGGA-CAATGAGC---ACATTTACTACAGGTTTGC  1167

seq1: chr18_27184573_27185606
seq2: B6Ng01-146C04.g_68_1089 (reverse)

seq1  TAGCTTTAAGAATGCTGTGTATGGTGCTAGGGGATCATTGAGAGGATTAT  50
      |||||||||| ||||| ||||| ||||||  |||||| ||||||||||||
seq2  TAGCTTTAAG-ATGCT-TGTAT-GTGCTA--GGATCA-TGAGAGGATTAT  44

seq1  TTTTTTTTTCTGTCAACAAAAGCTACCTAGACCATGAAAATGCCATTTCA  100
      ||||||||||||||||||||||||| ||||| ||||||||||||||||||
seq2  TTTTTTTTTCTGTCAACAAAAGCTA-CTAGA-CATGAAAATGCCATTTCA  92

seq1  AACAAGCTTCTTTGTCATAGGACATGGTAGGAGTGGTACTATACACACAT  150
      ||||||| ||||||||||||||||| ||||||||||||||||||||||||
seq2  AACAAGC-TCTTTGTCATAGGACAT-GTAGGAGTGGTACTATACACACAT  140

seq1  ATGTATATGCATTATATATGCATATATATGTATATAGTATGTATACACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATATGCATTATATATGCATATATATGTATATAGTATGTATACACAC  190

seq1  TTGTATAATGTATGTGTACATAATATATATATATATTATGTATAGTTTAC  250
      ||||||||||||||||||||||  ||||||||||||||||||||||||||
seq2  TTGTATAATGTATGTGTACATA--ATATATATATATTATGTATAGTTTAC  238

seq1  ATATATATTGAGAGGGGATTTGTAAATGTAATAAAGAATAAATATTTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATTGAGAGGGGATTTGTAAATGTAATAAAGAATAAATATTTCTA  288

seq1  CCATGGAAAATTGAAGTATATTTACTAATACAAGCAGAAATCTTATTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGAAAATTGAAGTATATTTACTAATACAAGCAGAAATCTTATTTTA  338

seq1  AGCTGCATCATTAATTTTACATTATAAAATAGCTTTAGAAGAATAAGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCATCATTAATTTTACATTATAAAATAGCTTTAGAAGAATAAGAGG  388

seq1  TTTTTTTTTTTTTCTTCAGTGTAGTCTGAGACTTAATTTTTTTTAGAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTCTTCAGTGTAGTCTGAGACTTAATTTTTTTTAGAACC  438

seq1  ACAGCCCTGCAATTTTATTGTTCTGACTAGTGAAAAATGATGGTTTTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCCTGCAATTTTATTGTTCTGACTAGTGAAAAATGATGGTTTTGCT  488

seq1  TTTTTATTTTTTTGCAGTGGTGTCTAGAGCAGAGTTATAACGATCAGTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTTTTTTGCAGTGGTGTCTAGAGCAGAGTTATAACGATCAGTCC  538

seq1  CAGATGAGCGTACCAAAGGCTGTAGGCCATCACTGGGGACTAACTAAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGAGCGTACCAAAGGCTGTAGGCCATCACTGGGGACTAACTAAGCC  588

seq1  TGGTTTTTATAACTGCTTAAGCACGAGAGAGGCTTTCATTTGTTTGCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTTATAACTGCTTAAGCACGAGAGAGGCTTTCATTTGTTTGCTGA  638

seq1  CTTCTTACAAAAGTAACTGCTGAAAGACTAATGAGAAATTTAGACAAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTACAAAAGTAACTGCTGAAAGACTAATGAGAAATTTAGACAAAAT  688

seq1  TCATCAAGTGTACATTTCAGAGCAGAGGCTACCATCCTCTGGCTCCTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAAGTGTACATTTCAGAGCAGAGGCTACCATCCTCTGGCTCCTATT  738

seq1  CTCTTTGTAACTTTTTCATTTTCTTCTAATTCAACAAATGTTCATGGAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGTAACTTTTTCATTTTCTTCTAATTCAACAAATGTTCATGGAAC  788

seq1  ATTTCTTTGCCTTTCTCTGGACGAGAAAGACACCAACATGTTTCTTCCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTTGCCTTTCTCTGGACGAGAAAGACACCAACATGTTTCTTCCTA  838

seq1  GAGAATTTTCCTTTGTACATAGTTTAAAGGGAACTTACAGAATATATCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTTTCCTTTGTACATAGTTTAAAGGGAACTTACAGAATATATCAA  888

seq1  AAGGTCAGGGAAGACACCGTAGCTTAATACCGCACCATGGTCACACTCCG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCAGGGAAGACACCGTAGCTTAATACCGCACCATGGTCACACTCCG  938

seq1  AGGTAGTGTTTGCAGAGAGAGACTTAGAATTGAAGAGGAAGTTGGGTGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGTGTTTGCAGAGAGAGACTTAGAATTGAAGAGGAAGTTGGGTGAA  988

seq1  CAAGAACAATGGTCTTGAAAACTACTAAGAATTC  1034
      ||||||||||||||||||||||||||||||||||
seq2  CAAGAACAATGGTCTTGAAAACTACTAAGAATTC  1022