BAC Information

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BAC

Clone NameB6Ng01-146J09
Chromosome18 (Build37)
Map Location 20,360,923 - 20,495,207
singlet/doubletdoublet
Overlap geneDsg1c, Dsg1a
Upstream geneLOC665624, LOC665629, Dsc3, Dsc2, Dsc1
Downstream geneDsg1b, Dsg4, LOC435558, Dsg3, Tpi-rs10, Dsg2, Ttr, LOC100040823, B4galt6, D030074E01Rik, Rnf125, Rnf138, Mep1b, EG622978, Gm944, LOC665722
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146J09.bB6Ng01-146J09.g
ACCDH943691DH943692
length1,1471,046
definitionDH943691|Mus musculus domesticus DNA, BAC clone: B6Ng01-146J09, 5' end.DH943692|Mus musculus domesticus DNA, BAC clone: B6Ng01-146J09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,360,923 - 20,362,089)(20,494,149 - 20,495,207)
sequence
gaattctcagactactattgctgaattgaattataaaatataaatatgca
tattaatttctgttttctaacttgtttttacagattgtttcaaggcacaa
gaaaggactatgtgaaattttaatgttatatttgaagctatatggagaca
gtattgagaatttcatagtcattaaatgtcatattgtattcaaagcagtg
cctaaaattgatggctttggggtaaaaaattctaaactattacttagtcc
aatgtagtagcaagcaaaagtctcagtatttcagtttttaatcttttcta
tataatcgatccatctcataattataatagcatggacaaaggattcctct
gctgtgaactcactccaagtacatttaaaatttggattgccttgtattat
ttcagataattattgcaggtaattaatttgctgtgttttaaggatatttc
tccaaagttgagtattgtcttagtcagggtttctattcctgcacaaacat
catgaccaagaagcagttggggcggaaagggtttattcagcttacacttc
catactgctgttcatcaccaaggaagtcaggaatggaactcaagcaggtc
aggaagcaggaactgatgcagaggccatggagggatgttcattactagct
tgcttcccctggcttgctcagcctgctctcttatagaaccaagactacca
gcccagggatggtcccacccacaaggtgcctttcccccttgatcactaat
tgagaaaatgccttacagttggatctcatggaggcatttcctcaactgaa
gctcctttctctgtgataactccagctgtgtcagttgacacaaaactagc
cagtacaagtataaatctgaaagtccaaataaaagtagatatagtcataa
gtattacttttgaagaaaattattactttgaccctagtgctctcgtgaat
catcaatactacaaccattttgtttgtctctcttcatcaaactcaacttc
tttaacaaaaagaccactatatgttaatgactatagaatattgtaatttc
tatatttatagcagagaagaatactagatttatataaatatgggcatggg
acttttttatttaagcttatatttgtcacaatacaatagtgtggtat
gaattcctaaaagaagactatataggatcattttaaattcaacttaaaag
ttgaatctcatttttaagccctgccttgtgacctctgttgagttttgagg
tacattcaaatcctctcgctttcctcactagctacctaagaactgcagaa
tgtgtaatttttatcattgtagggcacatctggagacggaattttggtga
gtccccaaatctcattctttttttttaaattttgatatttagttttattg
tacaaaccctgaaaaacaaatatacctgtagggtatttttccccccctgg
ggaactagaacatgctttaagatttaaaggccccaggcttttactctcac
cattgctttttttgtttttaattttattttgtttgcttgttttgggcttt
ggggttcccaacattgggattactgtgttatttggggccctttgtgattc
cacatgaactggtttgtgttttttttttttgtttgtttgtttgtttgttt
gttgttttttagctctagtcaagaagctccttggtgttttgatgaggagt
acattgaataagattctttcttttgtgtgcagattccttttgttagatac
tttcttcatttacatttcaaatgctatcctgaaagtcccctaatctcatt
cttggacttagcacttacttcatggggttcaggctgtggcccttctacag
cccacgtgtgaattgctccatcagaacattctggaacaggttcaaatcca
gctccaccaccaggggcccctccacaatcacagcagatcagcaggaatgg
aaccactgaagtagagaggggtgaggggttagcagtgcacaatgttgaaa
gaaacactccgattttcactggctaaatgagaactcctgagctgtctgag
tttaaaatcactatttatatgccaggacaccaattaatattggttagacc
cgcaatatctgaacttggaacactagactgccatgatttaatttgcttat
tatgtgaaatgcaatctaaacataaacttaaataggtgattctttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_20360923_20362089
seq2: B6Ng01-146J09.b_47_1193

seq1  GAATTCTCAGACTACTATTGCTGAATTGAATTATAAAATATAAATATGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGACTACTATTGCTGAATTGAATTATAAAATATAAATATGCA  50

seq1  TATTAATTTCTGTTTTCTAACTTGTTTTTACAGATTGTTTCAAGGCACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATTTCTGTTTTCTAACTTGTTTTTACAGATTGTTTCAAGGCACAA  100

seq1  GAAAGGACTATGTGAAATTTTAATGTTATATTTGAAGCTATATGGAGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGACTATGTGAAATTTTAATGTTATATTTGAAGCTATATGGAGACA  150

seq1  GTATTGAGAATTTCATAGTCATTAAATGTCATATTGTATTCAAAGCAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGAGAATTTCATAGTCATTAAATGTCATATTGTATTCAAAGCAGTG  200

seq1  CCTAAAATTGATGGCTTTGGGGTAAAAAATTCTAAACTATTACTTAGTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAATTGATGGCTTTGGGGTAAAAAATTCTAAACTATTACTTAGTCC  250

seq1  AATGTAGTAGCAAGCAAAAGTCTCAGTATTTCAGTTTTTAATCTTTTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAGTAGCAAGCAAAAGTCTCAGTATTTCAGTTTTTAATCTTTTCTA  300

seq1  TATAATCGATCCATCTCATAATTATAATAGCATGGACAAAGGATTCCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATCGATCCATCTCATAATTATAATAGCATGGACAAAGGATTCCTCT  350

seq1  GCTGTGAACTCACTCCAAGTACATTTAAAATTTGGATTGCCTTGTATTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGAACTCACTCCAAGTACATTTAAAATTTGGATTGCCTTGTATTAT  400

seq1  TTCAGATAATTATTGCAGGTAATTAATTTGCTGTGTTTTAAGGATATTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATAATTATTGCAGGTAATTAATTTGCTGTGTTTTAAGGATATTTC  450

seq1  TCCAAAGTTGAGTATTGTCTTAGTCAGGGTTTCTATTCCTGCACAAACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAGTTGAGTATTGTCTTAGTCAGGGTTTCTATTCCTGCACAAACAT  500

seq1  CATGACCAAGAAGCAGTTGGGGCGGAAAGGGTTTATTCAGCTTACACTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACCAAGAAGCAGTTGGGGCGGAAAGGGTTTATTCAGCTTACACTTC  550

seq1  CATACTGCTGTTCATCACCAAGGAAGTCAGGAATGGAACTCAAGCAGGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTGCTGTTCATCACCAAGGAAGTCAGGAATGGAACTCAAGCAGGTC  600

seq1  AGGAAGCAGGAACTGATGCAGAGGCCATGGAGGGATGTTCATTACTAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGCAGGAACTGATGCAGAGGCCATGGAGGGATGTTCATTACTAGCT  650

seq1  TGCTTCCCCTGGCTTGCTCAGCCTGCTCTCTTATAGAACCAAGACTACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCCCTGGCTTGCTCAGCCTGCTCTCTTATAGAACCAAGACTACCA  700

seq1  GCCCAGGGATGGTCCCACCCACAAGGTGCCTTTCCCCCTTGATCACTAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGGGATGGTCCCACCCACAAGGTGCCTTTCCCCCTTGATCACTAAT  750

seq1  TGAGAAAATGCCTTACAGTTGGATCTCATGGAGGCATTTCCTCAACTGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAATGCCTTACAGTTGGATCTCATGGAGGCATTTCCTCAACTGAA  800

seq1  GCTCCTTTCTCTGTGATAACTCCAGCTGTGTCAAGTTGACACAAAACTAG  850
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GCTCCTTTCTCTGTGATAACTCCAGCTGTGTC-AGTTGACACAAAACTAG  849

seq1  CCAGTACAAGTATAAATCTGAAAGTCCAAATAAAAGTAGATATAGTCATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTACAAGTATAAATCTGAAAGTCCAAATAAAAGTAGATATAGTCATA  899

seq1  AGTATTACTTTTGAAGAAAAATTATTACTTTGACCCTAGTGCTCTCCGTG  950
      |||||||||||||||| |||||||||||||||||||||||||||| ||||
seq2  AGTATTACTTTTGAAG-AAAATTATTACTTTGACCCTAGTGCTCT-CGTG  947

seq1  AATCATCAATACTACAACCATTTTGTTTGTCTCTCTTCATCAAACTCAAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATCAATACTACAACCATTTTGTTTGTCTCTCTTCATCAAACTCAAC  997

seq1  TTCCTTTAACAAAAAGAACCACTAATTATGTTAATTGACTATAGAATATT  1050
      || ||||||||||||| |||||||  |||||||| ||||||||||||| |
seq2  TT-CTTTAACAAAAAG-ACCACTA--TATGTTAA-TGACTATAGAATA-T  1041

seq1  TGTAATTTTCCTATA-TTATAGCAAGAGAAAGAATACTAGAATTTATATA  1099
      ||||||||  ||||| ||||||| |||| ||||||||||| |||||||||
seq2  TGTAATTT--CTATATTTATAGC-AGAG-AAGAATACTAG-ATTTATATA  1086

seq1  AATATGGGCATTGGGACTTTTTTATTTAAGCTTAAAATTTTGTCAACAAA  1149
      |||||||||| ||||||||||||||||||||||| |  |||||   || |
seq2  AATATGGGCA-TGGGACTTTTTTATTTAAGCTTATA--TTTGT---CACA  1130

seq1  ATACAATTAGTGTGGTAT  1167
      |||||| |||||||||||
seq2  ATACAA-TAGTGTGGTAT  1147

seq1: chr18_20494149_20495207
seq2: B6Ng01-146J09.g_67_1112 (reverse)

seq1  AAAAGAATCACCTATTTTAATTTATGATTTGATTTACAATTTCAACACTA  50
      ||||||||||||||||| | |||||| || ||||    ||||| ||| ||
seq2  AAAAGAATCACCTATTTAAGTTTATGTTTAGATT--GCATTTC-ACA-TA  46

seq1  ATAAGCAAATTAAAATTCATGGCAGTCTAGTGTTTCCAAGTTCATGATTA  100
      ||||||||||||||  |||||||||||||||| ||||||||||| |||  
seq2  ATAAGCAAATTAAA--TCATGGCAGTCTAGTG-TTCCAAGTTCA-GAT--  90

seq1  TTTGCGGGTCTAACCAATATTAATTGGTTGTCCTGGCATATTAAATAGTG  150
       |||||||||||||||||||||||||| |||||||||||| |||||||||
seq2  ATTGCGGGTCTAACCAATATTAATTGG-TGTCCTGGCATA-TAAATAGTG  138

seq1  ATTTTAAACTCAGACAGCTCAGGAGTTCTCATTTAGCCAGTGAAAATCGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAACTCAGACAGCTCAGGAGTTCTCATTTAGCCAGTGAAAATCGG  188

seq1  AGTGTTTTCTTTCAACATTGTGCACTGCTAACCCCTCACCCCTCTCTACT  250
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTG-TTTCTTTCAACATTGTGCACTGCTAACCCCTCACCCCTCTCTACT  237

seq1  TCAGTGGTTCCATTCCTGCTGATCTGCTGTGATTGTGGAGGGGCCCCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGGTTCCATTCCTGCTGATCTGCTGTGATTGTGGAGGGGCCCCTGG  287

seq1  TGGTGGAGCTGGATTTGAACCTGTTCCAGAATGTTCTGATGGAGCAATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGAGCTGGATTTGAACCTGTTCCAGAATGTTCTGATGGAGCAATTC  337

seq1  ACACGTGGGCTGTAGAAGGGCCACAGCCTGAACCCCATGAAGTAAGTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGTGGGCTGTAGAAGGGCCACAGCCTGAACCCCATGAAGTAAGTGCT  387

seq1  AAGTCCAAGAATGAGATTAGGGGACTTTCAGGATAGCATTTGAAATGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCAAGAATGAGATTAGGGGACTTTCAGGATAGCATTTGAAATGTAA  437

seq1  ATGAAGAAAGTATCTAACAAAAGGAATCTGCACACAAAAGAAAGAATCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGAAAGTATCTAACAAAAGGAATCTGCACACAAAAGAAAGAATCTT  487

seq1  ATTCAATGTACTCCTCATCAAAACACCAAGGAGCTTCTTGACTAGAGCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAATGTACTCCTCATCAAAACACCAAGGAGCTTCTTGACTAGAGCTA  537

seq1  AAAAACAACAAACAAACAAACAAACAAACAAAAAAAAAAAACACAAACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAACAAACAAACAAACAAACAAACAAAAAAAAAAAACACAAACCA  587

seq1  GTTCATGTGGAATCACAAAGGGCCCCAAATAACACAGTAATCCCAATGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATGTGGAATCACAAAGGGCCCCAAATAACACAGTAATCCCAATGTT  637

seq1  GGGAACCCCAAAGCCCAAAACAAGCAAACAAAATAAAATTAAAAACAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACCCCAAAGCCCAAAACAAGCAAACAAAATAAAATTAAAAACAAAA  687

seq1  AAAGCAATGGTGAGAGTAAAAGCCTGGGGCCTTTAAATCTTAAAGCATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAATGGTGAGAGTAAAAGCCTGGGGCCTTTAAATCTTAAAGCATGT  737

seq1  TCTAGTTCCCCAGGGGGGGAAAAATACCCTACAGGTATATTTGTTTTTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTTCCCCAGGGGGGGAAAAATACCCTACAGGTATATTTGTTTTTCA  787

seq1  GGGTTTGTACAATAAAACTAAATATCAAAATTTAAAAAAAAAGAATGAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTGTACAATAAAACTAAATATCAAAATTTAAAAAAAAAGAATGAGA  837

seq1  TTTGGGGACTCACCAAAATTCCGTCTCCAGATGTGCCCTACAATGATAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGACTCACCAAAATTCCGTCTCCAGATGTGCCCTACAATGATAAA  887

seq1  AATTACACATTCTGCAGTTCTTAGGTAGCTAGTGAGGAAAGCGAGAGGAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACACATTCTGCAGTTCTTAGGTAGCTAGTGAGGAAAGCGAGAGGAT  937

seq1  TTGAATGTACCTCAAAACTCAACAGAGGTCACAAGGCAGGGCTTAAAAAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATGTACCTCAAAACTCAACAGAGGTCACAAGGCAGGGCTTAAAAAT  987

seq1  GAGATTCAACTTTTAAGTTGAATTTAAAATGATCCTATATAGTCTTCTTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTCAACTTTTAAGTTGAATTTAAAATGATCCTATATAGTCTTCTTT  1037

seq1  TAGGAATTC  1059
      |||||||||
seq2  TAGGAATTC  1046