BAC Information

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BAC

Clone NameB6Ng01-148D09
Chromosome18 (Build37)
Map Location 30,471,848 - 30,615,196
singlet/doubletdoublet
Overlap genePik3c3, LOC666094, LOC666100
Upstream gene4930578E11Rik, LOC666073
Downstream geneEG666111, EG666114, LOC433168, Rit2, EG666130, Syt4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-148D09.bB6Ng01-148D09.g
ACCDH944884DH944885
length9681,082
definitionDH944884|Mus musculus domesticus DNA, BAC clone: B6Ng01-148D09, 5' end.DH944885|Mus musculus domesticus DNA, BAC clone: B6Ng01-148D09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,614,646 - 30,615,196)(30,471,848 - 30,472,938)
sequence
gaattctgtggtaatttagtatttattaatgtccatttacaaagaagtgt
tattctattaaatcacttttctgtgccaagatctcaaatatgcaaatgga
ataaagttgattccttctatagacatgtacattttaattacaaggccaac
atacatgcttaattaaaacaaaactcataaccagacttggactcagaagg
tgatgctcactatccgtcttgttctccatttcatctattgattctctgcc
tcagctgtggaggaccctgcttgtcggggcctcttcttcagcaccaactt
ccatcactggagaccccacctcttggtactgacccagggccccctattcc
ttttgtccccatttctctccaaatgtattctttgtcttcgatctactggt
gtggtcctgatccccacaggttgtttggggtgtttgtttgtttgtttcct
catccattctcagcttccccctcccccacagcccacctctatttttttct
gtcacctattgacctggtgagagcactctgtaccaggcacttcacaccct
ttacacttgcctagaatccagagaagggcagcagcaaccagtgcaccaaa
gaaagatgtcatcacttagaaacaccttaatcattataatttcaaatgtc
tagacctcagcacaaaaaccagaaacattaatagccaatatccacccagc
agaacccactaaccccaccagagcaggcactgggaaattcaatatggctg
actcacaaaacaaggactgcaagatagcaattatgaatattctcaaggac
cttaaaatacataaataaatcccttaaagaattctgtgaaaatgcaaagg
aacaattgaatgaatagtgaaagcaattcaggacaggaaagtagaatttt
taaaagaggcacagtaaaattattcaaacatgaatatactaggaaattaa
atttttaagaactataaa
gaattcctgcatggatggtttctgtgtactaagacatctactcagcaact
gtttgctgcatttgggtttttctttttcagggagatttttacttaagctt
tgcaatcaggatcttttttagcaagtagaagcgttttagggtaaataaat
cctgttgtgtcacatggtcatatacactaacaattgctcaggacccaggt
aattttctactctctctgttggttgtgcttagcctagacagagggtttct
cattacttctgaatcaaggtctttttcagtttcactttgaaggttagggg
aggaagagaaagatcccactgtgaaagcagagctcatgtcctcactttgt
tccctcagggtgacaagtctgtgagagtcatgcgctccctgctggcggct
cagcagacctttgtagatcgcctggtccatctgatgaaggcggtgcagag
agaaagtgggaaccgcaagaagaaggtaagcccacagtccagtccattga
tgttgccatatacacaaattccattgtttgcttcctttttagggacagtt
tcttacatgctctgtaacctcctgtccccctatgatcagtgataggttta
aagccatgaatgagccactatgcctgactctagatgaacttctaataggt
aattttagttccaggagcccatggcactggtgatgtggggtcctggtttg
taagttaacacatgttaacatgagatggtgctgaaaggcaggttagagga
ctaagggatcagttggtccagtgtccccaagtgtagtgtcatctatattg
cattgctgtctttatcttagcatcatagttgtttagagatgtaagatcat
tgacatgcacactgtgagaaaacagtggaccagagtaccttgcagaaccg
gtatgcctgtatgtgtgctctggctagcagccatctctctaagtggaagc
ttgcacataataaaccagatagctagttatctctctactttatgatgtga
agatttacatggtgtcgtccctctattcctgtaagataaaataggccgat
gttcttggttgctttgccaagaccacaaccct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_30614646_30615196
seq2: B6Ng01-148D09.b_46_596 (reverse)

seq1  AAGGGTGTGAAGTGCCTGGTACAGAGTGCTCTCACCAGGTCAATAGGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTGTGAAGTGCCTGGTACAGAGTGCTCTCACCAGGTCAATAGGTGA  50

seq1  CAGAAAAAAATAGAGGTGGGCTGTGGGGGAGGGGGAAGCTGAGAATGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAAAATAGAGGTGGGCTGTGGGGGAGGGGGAAGCTGAGAATGGAT  100

seq1  GAGGAAACAAACAAACAAACACCCCAAACAACCTGTGGGGATCAGGACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAACAAACAAACAAACACCCCAAACAACCTGTGGGGATCAGGACCA  150

seq1  CACCAGTAGATCGAAGACAAAGAATACATTTGGAGAGAAATGGGGACAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGTAGATCGAAGACAAAGAATACATTTGGAGAGAAATGGGGACAAA  200

seq1  AGGAATAGGGGGCCCTGGGTCAGTACCAAGAGGTGGGGTCTCCAGTGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATAGGGGGCCCTGGGTCAGTACCAAGAGGTGGGGTCTCCAGTGATG  250

seq1  GAAGTTGGTGCTGAAGAAGAGGCCCCGACAAGCAGGGTCCTCCACAGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTGGTGCTGAAGAAGAGGCCCCGACAAGCAGGGTCCTCCACAGCTG  300

seq1  AGGCAGAGAATCAATAGATGAAATGGAGAACAAGACGGATAGTGAGCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAGAATCAATAGATGAAATGGAGAACAAGACGGATAGTGAGCATC  350

seq1  ACCTTCTGAGTCCAAGTCTGGTTATGAGTTTTGTTTTAATTAAGCATGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCTGAGTCCAAGTCTGGTTATGAGTTTTGTTTTAATTAAGCATGTA  400

seq1  TGTTGGCCTTGTAATTAAAATGTACATGTCTATAGAAGGAATCAACTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGCCTTGTAATTAAAATGTACATGTCTATAGAAGGAATCAACTTTA  450

seq1  TTCCATTTGCATATTTGAGATCTTGGCACAGAAAAGTGATTTAATAGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTTGCATATTTGAGATCTTGGCACAGAAAAGTGATTTAATAGAAT  500

seq1  AACACTTCTTTGTAAATGGACATTAATAAATACTAAATTACCACAGAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTTCTTTGTAAATGGACATTAATAAATACTAAATTACCACAGAATT  550

seq1  C  551
      |
seq2  C  551

seq1: chr18_30471848_30472938
seq2: B6Ng01-148D09.g_72_1152

seq1  GAATTCCTGCATGGATGGTTTCTGTGTACTAAGACATCTACTCAGCAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCATGGATGGTTTCTGTGTACTAAGACATCTACTCAGCAACT  50

seq1  GTTTGCTGCATTTGGGTTTTTCTTTTTCAGGGAGATTTTTACTTAAGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCTGCATTTGGGTTTTTCTTTTTCAGGGAGATTTTTACTTAAGCTT  100

seq1  TGCAATCAGGATCTTTTTTAGCAAGTAGAAGCGTTTTAGGGTAAATAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATCAGGATCTTTTTTAGCAAGTAGAAGCGTTTTAGGGTAAATAAAT  150

seq1  CCTGTTGTGTCACATGGTCATATACACTAACAATTGCTCAGGACCCAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTGTGTCACATGGTCATATACACTAACAATTGCTCAGGACCCAGGT  200

seq1  AATTTTCTACTCTCTCTGTTGGTTGTGCTTAGCCTAGACAGAGGGTTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCTACTCTCTCTGTTGGTTGTGCTTAGCCTAGACAGAGGGTTTCT  250

seq1  CATTACTTCTGAATCAAGGTCTTTTTCAGTTTCACTTTGAAGGTTAGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACTTCTGAATCAAGGTCTTTTTCAGTTTCACTTTGAAGGTTAGGGG  300

seq1  AGGAAGAGAAAGATCCCACTGTGAAAGCAGAGCTCATGTCCTCACTTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAGAAAGATCCCACTGTGAAAGCAGAGCTCATGTCCTCACTTTGT  350

seq1  TCCCTCAGGGTGACAAGTCTGTGAGAGTCATGCGCTCCCTGCTGGCGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCAGGGTGACAAGTCTGTGAGAGTCATGCGCTCCCTGCTGGCGGCT  400

seq1  CAGCAGACCTTTGTAGATCGCCTGGTCCATCTGATGAAGGCGGTGCAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGACCTTTGTAGATCGCCTGGTCCATCTGATGAAGGCGGTGCAGAG  450

seq1  AGAAAGTGGGAACCGCAAGAAGAAGGTAAGCCCACAGTCCAGTCCATTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTGGGAACCGCAAGAAGAAGGTAAGCCCACAGTCCAGTCCATTGA  500

seq1  TGTTGCCATATACACAAATTCCATTGTTTGCTTCCTTTTTAGGGACAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCCATATACACAAATTCCATTGTTTGCTTCCTTTTTAGGGACAGTT  550

seq1  TCTTACATGCTCTGTAACCTCCTGTCCCCCTATGATCAGTGATAGGTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACATGCTCTGTAACCTCCTGTCCCCCTATGATCAGTGATAGGTTTA  600

seq1  AAGCCATGAATGAGCCACTATGCCTGACTCTAGATGAACTTCTAATAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATGAATGAGCCACTATGCCTGACTCTAGATGAACTTCTAATAGGT  650

seq1  AATTTTAGTTCCAGGAGCCCATGGCACTGGTGATGTGGGGTCCTGGTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAGTTCCAGGAGCCCATGGCACTGGTGATGTGGGGTCCTGGTTTG  700

seq1  TAAGTTAACACATGTTAACATGAGATGGTGCTGAAAGGCAGGTTAGAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTAACACATGTTAACATGAGATGGTGCTGAAAGGCAGGTTAGAGGA  750

seq1  CTAAGGGATCAGTTGGTCCAGTGTCCCCAAGTGTAGTGTCATCTATATTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGGATCAGTTGGTCCAGTGTCCCCAAGTGTAGTGTCATCTATATTG  800

seq1  CATTGCTGTCTTTATCTTAGCATCATAGTTGTTTAGAGATGTAAGATCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCTGTCTTTATCTTAGCATCATAGTTGTTTAGAGATGTAAGATCAT  850

seq1  TGACATGCACACTGTGAGAAAACAGTGGACCAGAGTACCTTGCAGAACCG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATGCACACTGTGAGAAAACAGTGGACCAGAGTACCTTGCAGAACCG  900

seq1  GTATGCCTGTATGTGTGCTCTGGCTAGCAGCCATCTCTCCTAAGTGGGAA  950
      |||||||||||||||||||||||||||||||||||||| |||||| ||||
seq2  GTATGCCTGTATGTGTGCTCTGGCTAGCAGCCATCTCT-CTAAGT-GGAA  948

seq1  GCTTGCACATAATAAACCAGATAGCTAGGTATCTCCTCTACTTTAATGAT  1000
      |||||||||||||||||||||||||||| ||||| ||||||||| |||||
seq2  GCTTGCACATAATAAACCAGATAGCTAGTTATCT-CTCTACTTT-ATGAT  996

seq1  GTGAAGGATTTACATGGTGTCGTCCCTTCTAATCCTGTAAGATAAAAATA  1050
      ||||| |||||||||||||||||||| |||| ||||||||||| ||||||
seq2  GTGAA-GATTTACATGGTGTCGTCCC-TCTATTCCTGTAAGAT-AAAATA  1043

seq1  GGCGGATGTTTCTTGGTGGCTTTTGTCAAAGACCACAACCC  1091
      ||| |||| |||||||| |||||   | |||||||||||||
seq2  GGCCGATG-TTCTTGGTTGCTTT--GCCAAGACCACAACCC  1081