BAC Information

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BAC

Clone NameB6Ng01-148J07
Chromosome18 (Build37)
Map Location 19,733,511 - 19,941,949
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040658, LOC665624, LOC665629
Downstream geneDsc3, Dsc2, Dsc1, Dsg1c, Dsg1a, Dsg1b, Dsg4, LOC435558, Dsg3, Tpi-rs10, Dsg2, Ttr, LOC100040823, B4galt6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-148J07.bB6Ng01-148J07.g
ACCDH945143DH945144
length1,0261,172
definitionDH945143|Mus musculus domesticus DNA, BAC clone: B6Ng01-148J07, 5' end.DH945144|Mus musculus domesticus DNA, BAC clone: B6Ng01-148J07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,733,511 - 19,734,531)(19,940,788 - 19,941,949)
sequence
gaattcactgtatttagagtattcctctactatttccatccaaaaaatag
cagtctccttgattctcaccttctctattcttcccatttagaatattttc
aagaattatacaatgcagttggtccacagactactaagttttcctggtga
atgtaaatgttcaagaaaagtaaaatattataagggccaaataattttaa
attatcacatgatgttcagtctctaatctagagtagcactgctagaaaac
ttcaaacaaaaggaaatattcaccatcactgccatgaccaacttcttgca
acaagctggacacagtgctaaagaaatccagtttagccaagagactcaga
gtttcttaactgcaaagacatttccatcagtaagcatgattccatttcct
ataaaaactagtaaaaccaataaagactatagcagagagatagacaagat
acaaacttttccacgctctttcaggttcctaatatcaaaagataaagatt
ttttttaaatgagaaaagtgacaaaatacagaaacaggaatattattaga
aagtgaaagtggagggccattctacatgggaggggtgattctcaaagaaa
atcatgcccatgagaatggactgtatattgtgtagtcaggcttttaaaag
gttgtggttaattacaaattaaggtggaaaatatttggatgacattttgt
gggggtttttttgtatgtatcatgatatcaaatgaatgatttaaatagac
aaatctgtagacattactatatctttgtaatgaagagtagaacctgtagt
agttctctcagttagtcctagcaagtacaggaaccagcatgtgaacctgg
cctggaaagaataaacactaaatgacttcatgtgtcttaacacctatcaa
aagaatggacttaagcacaaggaacttttctaggtgtgaatggtagatct
tacatagaatctctatatgcattttattcatatggaaaggggcactttat
atagaagtctatccatttacagcaga
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgatgtccaccttcttgagttctttatatatgatgggtattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgagggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccaggacacatacttttaaacactgattttataaattatttag
gcttttttactctgaatataatggatgtgaagacagagaaggaggagaca
ggcctatatattttgctgttagtgaattcttttcaatgcctttgttattt
ccatttatcaaacatcatatttaattatagcagactatgtcatctcaatc
tgcagcaatatcaaagtttggagaaactatttaggtattactatttattt
ttaaccaattttgtgcaaacattatttctctgaaagttattttctttgca
tttatgtttacaaattatacatttctagtttatatattgcttcactttta
aatatatacacacatgtgaatatacacatctgagcatgtgtgtacattta
tcacacatacccaacataagtacatacatgtggaattctcatcacttcat
atacttggttttgcataattttatagattttatgtttccagaaggcagtg
acaacatttgctttcctttccttttcttgggagtccttagaatgactcta
acaatcatactccaacacatactaatgtgttcaagattattctttataaa
atgaccacttataatgcagccagatagactttggctataaagaaaggaaa
tatggcatatgttttttgtttgatattcaactttgaaatagaatcaaaga
aaataaatagatcatgtatgcctcttgtttgtctctataatcaccaattg
agacttataaccaggttaattataattcattataatataagaagacttat
ttctagagggaaataaaataagattaacatgaaaacaacatgctgacttt
atttttgttctatatgttctatagaggttgttctgaatggatttaagaaa
tctttttttctcctaacattttttttttttgcaacgcacaagggatcatt
cttgggctttccctgctgatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_19733511_19734531
seq2: B6Ng01-148J07.b_47_1060

seq1  GAATTCACTGTATTTAGAGTATTCCTCTACTATTTCCATCCAAAAAATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTATTTAGAGTATTCCTCTACTATTTCCATCCAAAAAATAG  50

seq1  CAGTCTCCTTGATTCTCACCTTCTCTATTCTTCCCATTTAGAATATTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTCCTTGATTCTCACCTTCTCTATTCTTCCCATTTAGAATATTTTC  100

seq1  AAGAATTATACAATGCAGTTGGTCCACAGACTACTAAGTTTTCCTGGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTATACAATGCAGTTGGTCCACAGACTACTAAGTTTTCCTGGTGA  150

seq1  ATGTAAATGTTCAAGAAAAGTAAAATATTATAAGGGCCAAATAATTTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAATGTTCAAGAAAAGTAAAATATTATAAGGGCCAAATAATTTTAA  200

seq1  ATTATCACATGATGTTCAGTCTCTAATCTAGAGTAGCACTGCTAGAAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCACATGATGTTCAGTCTCTAATCTAGAGTAGCACTGCTAGAAAAC  250

seq1  TTCAAACAAAAGGAAATATTCACCATCACTGCCATGACCAACTTCTTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACAAAAGGAAATATTCACCATCACTGCCATGACCAACTTCTTGCA  300

seq1  ACAAGCTGGACACAGTGCTAAAGAAATCCAGTTTAGCCAAGAGACTCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCTGGACACAGTGCTAAAGAAATCCAGTTTAGCCAAGAGACTCAGA  350

seq1  GTTTCTTAACTGCAAAGACATTTCCATCAGTAAGCATGATTCCATTTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTAACTGCAAAGACATTTCCATCAGTAAGCATGATTCCATTTCCT  400

seq1  ATAAAAACTAGTAAAACCAATAAAGACTATAGCAGAGAGATAGACAAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAACTAGTAAAACCAATAAAGACTATAGCAGAGAGATAGACAAGAT  450

seq1  ACAAACTTTTCCACGCTCTTTCAGGTTCCTAATATCAAAAGATAAAGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACTTTTCCACGCTCTTTCAGGTTCCTAATATCAAAAGATAAAGATT  500

seq1  TTTTTTAAATGAGAAAAGTGACAAAATACAGAAACAGGAATATTATTAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAATGAGAAAAGTGACAAAATACAGAAACAGGAATATTATTAGA  550

seq1  AAGTGAAAGTGGAGGGCCATTCTACATGGGAGGGGTGATTCTCAAAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAAAGTGGAGGGCCATTCTACATGGGAGGGGTGATTCTCAAAGAAA  600

seq1  ATCATGCCCATGAGAATGGACTGTATATTGTGTAGTCAGGCTTTTAAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGCCCATGAGAATGGACTGTATATTGTGTAGTCAGGCTTTTAAAAG  650

seq1  GTTGTGGTTAATTACAAATTAAGGTGGAAAATATTTGGATGACATTTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGGTTAATTACAAATTAAGGTGGAAAATATTTGGATGACATTTTGT  700

seq1  GGGGGTTTTTTTGTATGTATCATGATATCAAATGAATGATTTAAATAGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTTTTTTTGTATGTATCATGATATCAAATGAATGATTTAAATAGAC  750

seq1  AAATCTGTAGACATTACTATATCTTTGTAATGAAGAGTAGAACCTGTAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGTAGACATTACTATATCTTTGTAATGAAGAGTAGAACCTGTAGT  800

seq1  AGTTCTCTCAGTTAGTCCTAGCAAGTACAGGAACCAGCATGTGAACCTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTCTCAGTTAGTCCTAGCAAGTACAGGAACCAGCATGTGAACCTGG  850

seq1  CCTGGAAAGAATAAACACTAAATGACTTCATGTGTCTTAACACCTATCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAAAGAATAAACACTAAATGACTTCATGTGTCTTAACACCTATCAA  900

seq1  AAGAATGGACTTAGGCACAAGGAACTCTTCTAGGTGTGGAATGGTAGATC  950
      ||||||||||||| |||||||||||| |||||||||| ||||||||||||
seq2  AAGAATGGACTTAAGCACAAGGAACTTTTCTAGGTGT-GAATGGTAGATC  949

seq1  TTACATAGAATCTCTAATATGCATTTTTATTCAATATGGAAGGGGGCAAC  1000
      ||||||||||||||| ||||||| |||||||| |||||||| ||||| ||
seq2  TTACATAGAATCTCT-ATATGCA-TTTTATTC-ATATGGAAAGGGGC-AC  995

seq1  TTTAATATAGAAAGTCTATCC  1021
      ||| |||||| ||||||||||
seq2  TTT-ATATAG-AAGTCTATCC  1014

seq1: chr18_19940788_19941949
seq2: B6Ng01-148J07.g_68_1239 (reverse)

seq1  GCATCAGCA-GGAAAG-CCAAG-ATGATCC--TGTGCTGTTGACAAAAAA  45
      ||||||||| |||||| ||||| |||||||  ||||| ||||  ||||||
seq2  GCATCAGCAGGGAAAGCCCAAGAATGATCCCTTGTGC-GTTGCAAAAAAA  49

seq1  AAAATAGTTTAGAGAAAAAAGTATT--CTAAAT-CATACAGAACAAACTC  92
      ||||  |||  |||||||||  |||   ||||| ||| |||||||| |||
seq2  AAAAATGTTAGGAGAAAAAAAGATTTCTTAAATCCATTCAGAACAACCTC  99

seq1  TATAGAACATATAGAACAAAAATAAAGTCAGCATTGTTGTTTTCATGTTA  142
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TATAGAACATATAGAACAAAAATAAAGTCAGCA-TGTTGTTTTCATGTTA  148

seq1  TTCTTATTTTATTTCCTTCTAG-AATAAGTCTTCTTATATTATTAATGAA  191
       ||||||||||||||| ||||| ||||||||||||||||||| |||||||
seq2  ATCTTATTTTATTTCCCTCTAGAAATAAGTCTTCTTATATTA-TAATGAA  197

seq1  TTATATTTAA-CTGGTTAT-AGTCTCAATT-GTGATTATAGAGACATACA  238
      ||||| |||| |||||||| |||||||||| ||||||||||||||| |||
seq2  TTATAATTAACCTGGTTATAAGTCTCAATTGGTGATTATAGAGACAAACA  247

seq1  AGAGGCATACATGATTCTATTTATTTTCTTTGATTCTATT--CAAGTTGA  286
      |||||||||||||| |||||||||||||||||||||||||   |||||||
seq2  AGAGGCATACATGA-TCTATTTATTTTCTTTGATTCTATTTCAAAGTTGA  296

seq1  ATATCAAACAAAAAACATATGCCATATTTCCTTTCTTTATAGCCAAAGTC  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAAACAAAAAACATATGCCATATTTCCTTTCTTTATAGCCAAAGTC  346

seq1  TATCTGGCTGCATTATAAGTGGTCATTTTATAAAGAATAATCTTGAACAC  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGGCTGCATTATAAGTGGTCATTTTATAAAGAATAATCTTGAACAC  396

seq1  ATTAGTATGTGTTGGAGTATGATTGTTAGAGTCATTCTAAGGACTCCCAA  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTATGTGTTGGAGTATGATTGTTAGAGTCATTCTAAGGACTCCCAA  446

seq1  GAAAAGGAAAGGAAAGCAAATGTTGTCACTGCCTTCTGGAAACATAAAAT  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGAAAGGAAAGCAAATGTTGTCACTGCCTTCTGGAAACATAAAAT  496

seq1  CTATAAAATTATGCAAAACCAAGTATATGAAGTGATGAGAATTCCACATG  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAAATTATGCAAAACCAAGTATATGAAGTGATGAGAATTCCACATG  546

seq1  TATGTACTTATGTTGGGTATGTGTGATAAATGTACACACATGCTCAGATG  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTACTTATGTTGGGTATGTGTGATAAATGTACACACATGCTCAGATG  596

seq1  TGTATATTCACATGTGTGTATATATTTAAAAGTGAAGCAATATATAAACT  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATTCACATGTGTGTATATATTTAAAAGTGAAGCAATATATAAACT  646

seq1  AGAAATGTATAATTTGTAAACATAAATGCAAAGAAAATAACTTTCAGAGA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGTATAATTTGTAAACATAAATGCAAAGAAAATAACTTTCAGAGA  696

seq1  AATAATGTTTGCACAAAATTGGTTAAAAATAAATAGTAATACCTAAATAG  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGTTTGCACAAAATTGGTTAAAAATAAATAGTAATACCTAAATAG  746

seq1  TTTCTCCAAACTTTGATATTGCTGCAGATTGAGATGACATAGTCTGCTAT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCAAACTTTGATATTGCTGCAGATTGAGATGACATAGTCTGCTAT  796

seq1  AATTAAATATGATGTTTGATAAATGGAAATAACAAAGGCATTGAAAAGAA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAATATGATGTTTGATAAATGGAAATAACAAAGGCATTGAAAAGAA  846

seq1  TTCACTAACAGCAAAATATATAGGCCTGTCTCCTCCTTCTCTGTCTTCAC  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTAACAGCAAAATATATAGGCCTGTCTCCTCCTTCTCTGTCTTCAC  896

seq1  ATCCATTATATTCAGAGTAAAAAAGCCTAAATAATTTATAAAATCAGTGT  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATTATATTCAGAGTAAAAAAGCCTAAATAATTTATAAAATCAGTGT  946

seq1  TTAAAAGTATGTGTCCTGGGACCTAATGAAACTCCAAAGTTTCTGCAAGG  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGTATGTGTCCTGGGACCTAATGAAACTCCAAAGTTTCTGCAAGG  996

seq1  CAAAAGACACCCTCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGG  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGACACCCTCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGG  1046

seq1  ATCTTTACCTATCCTAAATCAGATAGGGGACTAATACCCATCATATATAA  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTACCTATCCTAAATCAGATAGGGGACTAATACCCATCATATATAA  1096

seq1  AGAACTCAAGAAGGTGGACATCAGAAAATCAAATAACCCCATTAAAAAAT  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCAAGAAGGTGGACATCAGAAAATCAAATAACCCCATTAAAAAAT  1146

seq1  GGGGCTCAGAACTGAACAAAGAATTC  1162
      ||||||||||||||||||||||||||
seq2  GGGGCTCAGAACTGAACAAAGAATTC  1172