BAC Information

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BAC

Clone NameB6Ng01-148K11
Chromosome18 (Build37)
Map Location 69,520,948 - 69,681,087
singlet/doubletdoublet
Overlap geneTcf4
Upstream geneMc2r, LOC100043380, EG225681
Downstream geneCcdc68, Rab27b, 2310002L13Rik, 4930503L19Rik, Stard6, Poli
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-148K11.bB6Ng01-148K11.g
ACCDH945199DH945200
length496985
definitionDH945199|Mus musculus domesticus DNA, BAC clone: B6Ng01-148K11, 5' end.DH945200|Mus musculus domesticus DNA, BAC clone: B6Ng01-148K11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,520,948 - 69,521,449)(69,680,102 - 69,681,087)
sequence
tgttctttaacccttaagattatgatagaattaggtcaagtcttggttgt
tgaaagaatgctgaaaagtttgggataacacagtggcatatttttttttc
caatttgggaatgcgaatatgtgaatatgtgaatatggaaggaacattga
tggaattattaagaatgataaattcttatcatttgctttgtccttcattc
atttattttgtaaaagccccccccccctccccggagtggttacaaattgc
catgttaccatggggatatcatggtgctatgagagatgatgagtgtcaac
ctctgcatttaagtggagtctgctactgttggtgttagatacaaattctg
ccatgattcatctggaaagtgcttttaaatgaggtgatgcaggcttttgc
ataagatgggtttcaaatatagttcagtttccaattgaaatatcaatgtt
agaaactgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgtg
gaattctttccacacagactgccatgggctgcccctcctgcgagagttct
caacccagagctgcgctgctcatcgcaacaaatcttttagatgctggagt
atgactgaattggcaactgggccagaggagttaacttttaaaatgcaaat
atatacagcagcggggaggggaaagaaaacccgtccagaaccaatcctcc
agaattctaccttcatgagaaatgagcgctcctggtacagagacttccct
cagtgcccagttactgaagcacatgtgggcttacatgggttttaaggata
taataaacaggttgcttttttttttttcaatcccaagtggatttttttcc
cccacgtcattcaaaaaaactagaaaagcaagaaggctcagaagatgaag
cagccctttttctgcaaaaataaaaataattaaaaaaaaacaaaacctac
gaatgtctgccatctctgggtgaggactaaaatggtacaaggctttgaat
attaaagagcattttttttttaaatctcagagagggctctggaaagcact
aaactggtcctgctcttttaaggtacaccttatgatacgtcttttaattt
atgattggtaatgagagtaaaattcaaagaaaaatatttataaaaattta
gggctttctcttttctctacagacagcattttccgaaatgggttctctag
agttactagtacacaaacacagagggcactgaaatgcaacacatgcacgc
atgtaaacacacacacacacacacacgcacacgcacacgcacacacttgc
actttatatttaataaggtgctcctctcctcttcctctaactatgcatgc
ttcccctgcgacgatggcttactgttaggcctgccgggccttgactccag
ccaaaaacaatcccagaaacaaaaagggataacaaatccatatttccgca
gacattttataccctcggtccacccctcttcgcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_69520948_69521449
seq2: B6Ng01-148K11.b_45_546

seq1  GAATTCTGTTCTTTAACCCTTAAGATTATGATAGAATTAGGTCAAGTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTCTTTAACCCTTAAGATTATGATAGAATTAGGTCAAGTCTT  50

seq1  GGTTGTTGAAAGAATGCTGAAAAGTTTGGGATAACACAGTGGCATATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTTGAAAGAATGCTGAAAAGTTTGGGATAACACAGTGGCATATTTT  100

seq1  TTTTTCCAATTTGGGAATGCGAATATGTGAATATGTGAATATGGAAGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCAATTTGGGAATGCGAATATGTGAATATGTGAATATGGAAGGAA  150

seq1  CATTGATGGAATTATTAAGAATGATAAATTCTTATCATTTGCTTTGTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGATGGAATTATTAAGAATGATAAATTCTTATCATTTGCTTTGTCCT  200

seq1  TCATTCATTTATTTTGTAAAAGCCCCCCCCCCCTCCCCGGAGTGGTTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCATTTATTTTGTAAAAGCCCCCCCCCCCTCCCCGGAGTGGTTACA  250

seq1  AATTGCCATGTTACCATGGGGATATCATGGTGCTATGAGAGATGATGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCCATGTTACCATGGGGATATCATGGTGCTATGAGAGATGATGAGT  300

seq1  GTCAACCTCTGCATTTAAGTGGAGTCTGCTACTGTTGGTGTTAGATACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACCTCTGCATTTAAGTGGAGTCTGCTACTGTTGGTGTTAGATACAA  350

seq1  ATTCTGCCATGATTCATCTGGAAAGTGCTTTTAAATGAGGTGATGCAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGCCATGATTCATCTGGAAAGTGCTTTTAAATGAGGTGATGCAGGC  400

seq1  TTTTGCATAAGATGGGTTTCAAATATAGTTCAGTTTCCAATTGAAATATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCATAAGATGGGTTTCAAATATAGTTCAGTTTCCAATTGAAATATC  450

seq1  AATGTTAGAAACTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTGTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTAGAAACTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTGTGTG  500

seq1  TG  502
      ||
seq2  TG  502

seq1: chr18_69680102_69681087
seq2: B6Ng01-148K11.g_70_1054 (reverse)

seq1  GTGCGAAAAGAGGGTGGGACCGAGGGATAAAAATGTCTGCGGAAATAT-G  49
      |||||  |||||||  ||||||||||   ||||||||||||||||||| |
seq2  GTGCG--AAGAGGGGTGGACCGAGGGTATAAAATGTCTGCGGAAATATGG  48

seq1  ATTTGTTATCCCTTTTTGTTTCT-GGATTGTTTTTGGCTGGAAGTCAAGG  98
      ||||||||||||||||||||||| ||||||||||||||||| ||||||||
seq2  ATTTGTTATCCCTTTTTGTTTCTGGGATTGTTTTTGGCTGG-AGTCAAGG  97

seq1  -CCGGCAGG-CTAACAGTAAAGCCATCGTCGCAGGGGAAGCATGCATGAG  146
       |||||||| |||||||| |||||||||||||||||||||||||||| ||
seq2  CCCGGCAGGCCTAACAGT-AAGCCATCGTCGCAGGGGAAGCATGCAT-AG  145

seq1  TTAGAGGAAGAGGAGA-GAGCACCTTAATTAAATAATAAAGTGCAAGTGT  195
      |||||||||||||||| ||||||||| ||||||| |||||||||||||||
seq2  TTAGAGGAAGAGGAGAGGAGCACCTT-ATTAAAT-ATAAAGTGCAAGTGT  193

seq1  GTGCGTGTGCGTGTGCGTGTGTGTGTGTGTGTGTGTGTACATGCGTGCAT  245
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GTGCGTGTGCGTGTGCGTGTGTGTGTGTGTGTGTGTTTACATGCGTGCAT  243

seq1  GTGTTGCATGTCAGTGCCCTCTGTGTTTGTGTACTAGTAACTCTAGAGAA  295
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGCATTTCAGTGCCCTCTGTGTTTGTGTACTAGTAACTCTAGAGAA  293

seq1  CCCATTTCGGAAAATGCTGTCTGTAGAGAAAAGAGAAAGCCCTAAATTTT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTCGGAAAATGCTGTCTGTAGAGAAAAGAGAAAGCCCTAAATTTT  343

seq1  TATAAATATTTTTCTTTGAATTTTACTCTCATTACCAATCAT-AATTAAA  394
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TATAAATATTTTTCTTTGAATTTTACTCTCATTACCAATCATAAATTAAA  393

seq1  AGACGTATCATAAGGTGTACCTTAAAAGAGCAGGACCAGTTTAGTGCTTT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGTATCATAAGGTGTACCTTAAAAGAGCAGGACCAGTTTAGTGCTTT  443

seq1  CCAGAGCCCTCTCTGAGATTTAAAAAAAAAATGCTCTTTAATATTCAAAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGCCCTCTCTGAGATTTAAAAAAAAAATGCTCTTTAATATTCAAAG  493

seq1  CCTTGTACCATTTTAGTCCTCACCCAGAGATGGCAGACATTCGTAGGTTT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTACCATTTTAGTCCTCACCCAGAGATGGCAGACATTCGTAGGTTT  543

seq1  TGTTTTTTTTTAATTATTTTTATTTTTGCAGAAAAAGGGCTGCTTCATCT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTTTTTAATTATTTTTATTTTTGCAGAAAAAGGGCTGCTTCATCT  593

seq1  TCTGAGCCTTCTTGCTTTTCTAGTTTTTTTGAATGACGTGGGGGAAAAAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGCCTTCTTGCTTTTCTAGTTTTTTTGAATGACGTGGGGGAAAAAA  643

seq1  ATCCACTTGGGATTGAAAAAAAAAAAAGCAACCTGTTTATTATATCCTTA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACTTGGGATTGAAAAAAAAAAAAGCAACCTGTTTATTATATCCTTA  693

seq1  AAACCCATGTAAGCCCACATGTGCTTCAGTAACTGGGCACTGAGGGAAGT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCATGTAAGCCCACATGTGCTTCAGTAACTGGGCACTGAGGGAAGT  743

seq1  CTCTGTACCAGGAGCGCTCATTTCTCATGAAGGTAGAATTCTGGAGGATT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTACCAGGAGCGCTCATTTCTCATGAAGGTAGAATTCTGGAGGATT  793

seq1  GGTTCTGGACGGGTTTTCTTTCCCCTCCCCGCTGCTGTATATATTTGCAT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTGGACGGGTTTTCTTTCCCCTCCCCGCTGCTGTATATATTTGCAT  843

seq1  TTTAAAAGTTAACTCCTCTGGCCCAGTTGCCAATTCAGTCATACTCCAGC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAGTTAACTCCTCTGGCCCAGTTGCCAATTCAGTCATACTCCAGC  893

seq1  ATCTAAAAGATTTGTTGCGATGAGCAGCGCAGCTCTGGGTTGAGAACTCT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAAAGATTTGTTGCGATGAGCAGCGCAGCTCTGGGTTGAGAACTCT  943

seq1  CGCAGGAGGGGCAGCCCATGGCAGTCTGTGTGGAAAGAATTC  986
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGGAGGGGCAGCCCATGGCAGTCTGTGTGGAAAGAATTC  985