BAC Information

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BAC

Clone NameB6Ng01-149B07
Chromosome18 (Build37)
Map Location 19,257,549 - 19,370,883
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040658
Downstream geneLOC665624, LOC665629, Dsc3, Dsc2, Dsc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149B07.bB6Ng01-149B07.g
ACCDH945515DH945516
length9621,066
definitionDH945515|Mus musculus domesticus DNA, BAC clone: B6Ng01-149B07, 5' end.DH945516|Mus musculus domesticus DNA, BAC clone: B6Ng01-149B07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,257,549 - 19,258,508)(19,369,814 - 19,370,883)
sequence
gaattccaagcccagggttggctcaaggactacctagggcattggtgaag
gccaggaagcaaagttcaattttgcctaggtatttggcaagtcattgctt
gaaggcacctataataaaacaatactgaaaggaagcacacagatccattc
gcaaggacaaaattggagcatatgttctatggaatgccacagttccagga
gactaagtttccatgaaactctttgcctaaggactgcatccaggcttttg
acctgtcatgcacgtcactactggagtggatgtagcaataattttgtttt
gaaaaagcggagctgtgatatgttaagtaaggcatcaaaatagagaattc
tgcacagaaagagcacacacagtcattatgaaacatcactgtaaatacta
gggttattgcatgggtatagtaactatccaaagctcaagaaagaaaattt
ataaaggccagaggcatgagttgatagtgtgcttgtaagaaattacatcc
aaccacaaaagccaaaatggatctatgagtaataggtcctttctatttgt
aaataacatgacaagtagttttgtttcttacttgttgatgaaaaacatct
accagtgaatatataaaatcttgagtcatagaactttctgtacagcatca
gagaggaattgtaaatcaatcgtaggaaatagcttttgaaaacatatcat
caacagaagcaatgtcatcccaatggtaggaaattgtttcttgggaatag
acaaaatcttaaacacctgtgttttatgtaatttggaaggaccacagtgt
ataccttgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtatttcataa
aaaaaatgtatgatagtaaaatcctcttaaaatgttatgacaaaactttt
aaagttgtttcattaccactaaaaaacatggtttaaaaaaaaagaagaaa
gttgtcagctag
gaattcaaggggtgtagtagtttagctgtgagcctctagatgattaaaca
tgtattgaatacgtgtatatatgaagtctataaaataataaattctcttt
aggctgcttttggctctcggtcagtttctttgtgggtgcttttatctgct
tccttttaaccttatatttgagtctttttttttttaactataactgcaag
aacttctaattctttggagacaatatttggaagttcttcaaagcactttc
tacagcatttggggaaaataactgaagttaagcaagatatgaagtggaaa
ctcgctaagttttccctcagttcatttcactggaattcaattctgaatag
ccccagagtgtgattacatagctcagagccccaggcaaagaacacatttc
tcaggatatccttcagaactggttgcaaccttctatgtagaaatgtgaaa
ttctaggaagacacaaggtattatataaagattttatttaagatataatg
cagtaccttcatgagtgtccatgtcattcttgaagtgacttacaccaatc
tttatcctgcatggggttcattaacatatcagggatcatcacaaaatgcc
attgcttcaccaggtacaagtcctgatggtgttactatggtgatgtttat
ccatgaaatagaaatgaataggatatgcacatcaacaggaaagacaatcc
agtgtacttaataacagaatatgcacatatgcttatttattatgtgcaac
aaatgtctcattgctcaaaacgtctgcagagttttatttttgcatggact
atagaacacagaaaatcctgcatagagtaaaaaaataagattcagtatct
aaaaatagatacacatgtgtctaattataaatcaatcatcttttcctata
attgcttttgtatcaatatatgcaaacaaatcattttcatgtttagcaca
tatgtatatatatataaacttggatagtttaaattttttctctttacaga
gtaggatactagtactattaatagtctttaagttagcagaactcaaacac
agacttttctctggcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_19257549_19258508
seq2: B6Ng01-149B07.b_49_1010

seq1  GAATTCCAAGCCCAGGGTTGGCTCAAGGACTACCTAGGGCATTGGTGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGCCCAGGGTTGGCTCAAGGACTACCTAGGGCATTGGTGAAG  50

seq1  GCCAGGAAGCAAAGTTCAATTTTGCCTAGGTATTTGGCAAGTCATTGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGAAGCAAAGTTCAATTTTGCCTAGGTATTTGGCAAGTCATTGCTT  100

seq1  GAAGGCACCTATAATAAAACAATACTGAAAGGAAGCACACAGATCCATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCACCTATAATAAAACAATACTGAAAGGAAGCACACAGATCCATTC  150

seq1  GCAAGGACAAAATTGGAGCATATGTTCTATGGAATGCCACAGTTCCAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGACAAAATTGGAGCATATGTTCTATGGAATGCCACAGTTCCAGGA  200

seq1  GACTAAGTTTCCATGAAACTCTTTGCCTAAGGACTGCATCCAGGCTTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAGTTTCCATGAAACTCTTTGCCTAAGGACTGCATCCAGGCTTTTG  250

seq1  ACCTGTCATGCACGTCACTACTGGAGTGGATGTAGCAATAATTTTGTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTCATGCACGTCACTACTGGAGTGGATGTAGCAATAATTTTGTTTT  300

seq1  GAAAAAGCGGAGCTGTGATATGTTAAGTAAGGCATCAAAATAGAGAATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGCGGAGCTGTGATATGTTAAGTAAGGCATCAAAATAGAGAATTC  350

seq1  TGCACAGAAAGAGCACACACAGTCATTATGAAACATCACTGTAAATACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAGAAAGAGCACACACAGTCATTATGAAACATCACTGTAAATACTA  400

seq1  GGGTTATTGCATGGGTATAGTAACTATCCAAAGCTCAAGAAAGAAAATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTATTGCATGGGTATAGTAACTATCCAAAGCTCAAGAAAGAAAATTT  450

seq1  ATAAAGGCCAGAGGCATGAGTTGATAGTGTGCTTGTAAGAAATTACATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGGCCAGAGGCATGAGTTGATAGTGTGCTTGTAAGAAATTACATCC  500

seq1  AACCACAAAAGCCAAAATGGATCTATGAGTAATAGGTCCTTTCTATTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACAAAAGCCAAAATGGATCTATGAGTAATAGGTCCTTTCTATTTGT  550

seq1  AAATAACATGACAAGTAGTTTTGTTTCTTACTTGTTGATGAAAAACATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACATGACAAGTAGTTTTGTTTCTTACTTGTTGATGAAAAACATCT  600

seq1  ACCAGTGAATATATAAAATCTTGAGTCATAGAACTTTCTGTACAGCATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTGAATATATAAAATCTTGAGTCATAGAACTTTCTGTACAGCATCA  650

seq1  GAGAGGAATTGTAAATCAATCGTAGGAAATAGCTTTTGAAAACATATCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGAATTGTAAATCAATCGTAGGAAATAGCTTTTGAAAACATATCAT  700

seq1  CAACAGAAGCAATGTCATCCCAATGGTAGGAAATTGTTTCTTGGGAATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGAAGCAATGTCATCCCAATGGTAGGAAATTGTTTCTTGGGAATAG  750

seq1  ACAAAATCTTAAACACCTGTGTTTTATGTAATTTGGAAGGACCACAGTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATCTTAAACACCTGTGTTTTATGTAATTTGGAAGGACCACAGTGT  800

seq1  ATACCTTGTGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTATTTCAT-A  849
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATACCTTGTGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTATTTCATAA  850

seq1  AAAAAATGTAGGAAAGTAAAAATCTCTTAAAAAGTTTAGGACAAAACATT  899
      |||||||||| || |||||||  ||||||||| | ||| |||||||| ||
seq2  AAAAAATGTATGATAGTAAAATCCTCTTAAAATG-TTATGACAAAACTTT  899

seq1  TAAAG-TGGTTCAATACCACTAAAAAACATGCTTT-AAAAAAAAGAAGAA  947
      ||||| || |||| ||||||||||||||||| ||| ||||||||||||||
seq2  TAAAGTTGTTTCATTACCACTAAAAAACATGGTTTAAAAAAAAAGAAGAA  949

seq1  AGTTTGCAGCTAG  960
      ||||  |||||||
seq2  AGTTGTCAGCTAG  962

seq1: chr18_19369814_19370883
seq2: B6Ng01-149B07.g_69_1134 (reverse)

seq1  GGCCAGAG-ACAGTCTGTGTTTGAGTTCTTGGCTAACTTTATAAGACTAT  49
      |||||||| | ||||||||||||||||||  ||||||||   ||||||||
seq2  GGCCAGAGAAAAGTCTGTGTTTGAGTTCT--GCTAACTT--AAAGACTAT  46

seq1  T-ATAGTACTAGTATTCCTAATTCTGTAAAGGAGAAAAATTTAAACTATC  98
      | |||||||||||| |||| | |||||||||   ||||||||||||||||
seq2  TAATAGTACTAGTA-TCCT-ACTCTGTAAAGAGAAAAAATTTAAACTATC  94

seq1  CAAGTTTATATATATATACATATGTGCTAAACATGAAAATGATTTGTTTG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTTATATATATATACATATGTGCTAAACATGAAAATGATTTGTTTG  144

seq1  CATATATTGATACAAAAGCAATTATAGGAAAAGATGATTGATTTATAATT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATTGATACAAAAGCAATTATAGGAAAAGATGATTGATTTATAATT  194

seq1  AGACACATGTGTATCTATTTTTAGATACTGAATCTTATTTTTTTACTCTA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACATGTGTATCTATTTTTAGATACTGAATCTTATTTTTTTACTCTA  244

seq1  TGCAGGATTTTCTGTGTTCTATAGTCCATGCAAAAATAAAACTCTGCAGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGATTTTCTGTGTTCTATAGTCCATGCAAAAATAAAACTCTGCAGA  294

seq1  CGTTTTGAGCAATGAGACATTTGTTGCACATAATAAATAAGCATATGTGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTTGAGCAATGAGACATTTGTTGCACATAATAAATAAGCATATGTGC  344

seq1  ATATTCTGTTATTAAGTACACTGGATTGTCTTTCCTGTTGATGTGCATAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTGTTATTAAGTACACTGGATTGTCTTTCCTGTTGATGTGCATAT  394

seq1  CCTATTCATTTCTATTTCATGGATAAACATCACCATAGTAACACCATCAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTCATTTCTATTTCATGGATAAACATCACCATAGTAACACCATCAG  444

seq1  GACTTGTACCTGGTGAAGCAATGGCATTTTGTGATGATCCCTGATATGTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGTACCTGGTGAAGCAATGGCATTTTGTGATGATCCCTGATATGTT  494

seq1  AATGAACCCCATGCAGGATAAAGATTGGTGTAAGTCACTTCAAGAATGAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACCCCATGCAGGATAAAGATTGGTGTAAGTCACTTCAAGAATGAC  544

seq1  ATGGACACTCATGAAGGTACTGCATTATATCTTAAATAAAATCTTTATAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACACTCATGAAGGTACTGCATTATATCTTAAATAAAATCTTTATAT  594

seq1  AATACCTTGTGTCTTCCTAGAATTTCACATTTCTACATAGAAGGTTGCAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCTTGTGTCTTCCTAGAATTTCACATTTCTACATAGAAGGTTGCAA  644

seq1  CCAGTTCTGAAGGATATCCTGAGAAATGTGTTCTTTGCCTGGGGCTCTGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTCTGAAGGATATCCTGAGAAATGTGTTCTTTGCCTGGGGCTCTGA  694

seq1  GCTATGTAATCACACTCTGGGGCTATTCAGAATTGAATTCCAGTGAAATG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGTAATCACACTCTGGGGCTATTCAGAATTGAATTCCAGTGAAATG  744

seq1  AACTGAGGGAAAACTTAGCGAGTTTCCACTTCATATCTTGCTTAACTTCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGGGAAAACTTAGCGAGTTTCCACTTCATATCTTGCTTAACTTCA  794

seq1  GTTATTTTCCCCAAATGCTGTAGAAAGTGCTTTGAAGAACTTCCAAATAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTTCCCCAAATGCTGTAGAAAGTGCTTTGAAGAACTTCCAAATAT  844

seq1  TGTCTCCAAAGAATTAGAAGTTCTTGCAGTTATAGTTAAAAAAAAAAAGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCAAAGAATTAGAAGTTCTTGCAGTTATAGTTAAAAAAAAAAAGA  894

seq1  CTCAAATATAAGGTTAAAAGGAAGCAGATAAAAGCACCCACAAAGAAACT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAATATAAGGTTAAAAGGAAGCAGATAAAAGCACCCACAAAGAAACT  944

seq1  GACCGAGAGCCAAAAGCAGCCTAAAGAGAATTTATTATTTTATAGACTTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCGAGAGCCAAAAGCAGCCTAAAGAGAATTTATTATTTTATAGACTTC  994

seq1  ATATATACACGTATTCAATACATGTTTAATCATCTAGAGGCTCACAGCTA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATACACGTATTCAATACATGTTTAATCATCTAGAGGCTCACAGCTA  1044

seq1  AACTACTACACCCCTTGAATTC  1070
      ||||||||||||||||||||||
seq2  AACTACTACACCCCTTGAATTC  1066