BAC Information

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BAC

Clone NameB6Ng01-149B12
Chromosome16 (Build37)18 (Build37)
Map Location 46,005,906 - 46,005,96018,108,836 - 18,109,351
singlet/doubletsingletsinglet
Overlap genePlcxd2
Upstream geneEG433021, Ccdc80, Slc35a5, Atg3, EG547267, Btla, Cd200, LOC385905, Gm609, LOC628681, Slc9a10, Gcet2, BC016579, Tmprss7, Tagln3, Abhd10, Phldb2, EG667418
Downstream gene4930546O09Rik, Cd96, AL024110, Pvrl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149B12.bB6Ng01-149B12.g
ACCDH945525DH945526
length2671,023
definitionDH945525|Mus musculus domesticus DNA, BAC clone: B6Ng01-149B12, 5' end.DH945526|Mus musculus domesticus DNA, BAC clone: B6Ng01-149B12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(46,005,906 - 46,005,960)(18,108,836 - 18,109,351)
sequence
ttttacaatattttaaaaaataaatgtgcttgctgtctctttctaagaat
ccagggcctaggctcatggaatgctaattcatgagaaccctggggtaatg
actgaattgatatgtaaataaaaaaactgtgcttttgatctgcaaaagat
tagctattagctatcaagagagtttttgaatagcaaaagaaaattgtctg
gaacagaacaaacacagagagagagagagagagagagagagagagagaga
gggagagggagagggga
gaattctctattttgttgggtctttctgtggtttaggtatcagagtaatt
gggtagagtaccttgtgcttcaattttgtggaatagtttgtaaagaactg
gaattagatcttctttgaaggtctgatagaactctgcactaaacccatct
ggtcctggacttttttggttgggagactattaatgactgcttctatttct
ttaggggatataggacggtttagatcattaatctgatcctgatttaattt
tggtacctgctatctgtctagaaatttgtccatttcatccaggttttcca
gttttgttgagtatacccttttgtagaaggatatgatggtgttttagatt
tcttcaggatctgttgttatgtctccctgttcatttctgattttgttaat
taggatgctgtccctgtgccctctagtgagtctggctaagggtttaccta
tattgttgattttctctgagaaactcaacagctcgtcatttggttgattc
tttgaataattcttcttgtttccacttggttgatttctcccctgagtttg
attattaccttccgtctactcctcttgggtgaatttgcttccttatgttc
taaagcttttaggggtattgccaagctgctagggtgtgctctctctagtt
tctttttggaggcactcatagctatgagttttcctcttagaaatgctttc
attgtgtcccataagttgggatatgttgtggcttcattttcattaaactc
taagaagtccttaatttctttctttattccttccttgaccaaggtatcat
tgagaagagtgtgtcagtttccatttgaatgttggctttctattatttat
tttgttattggagatcagccttagtccatggtgatctgataggatgcatg
ggacaattcaatatttttgtatctgctgaggcctttttgtgaccaattat
atggttaatttggagaggtaccaagaatgctggagaggagggttatcctt
tttgttttaggataaaaatgttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_46005906_46005960
seq2: B6Ng01-149B12.b_266_319 (reverse)

seq1  TCCCTCTCTCCCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  50
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCC-CTCTCCCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  49

seq1  TCTGT  55
      |||||
seq2  TCTGT  54

seq1: chr18_18108836_18109351
seq2: B6Ng01-149B12.g_583_1093 (reverse)

seq1  GAACA-TTTTATCCTAAAAC-AAAAGGATATACCTTCTTCT-CATCACCT  47
      ||||| |||||||||||||| ||||||||| ||| || ||| || ||  |
seq2  GAACATTTTTATCCTAAAACAAAAAGGATA-ACCCTCCTCTCCAGCA-TT  48

seq1  CATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAAACAGGCCT  97
      | ||||||| ||||| ||||| |||| ||||| |||||||||| ||||||
seq2  CTTGGTACC-TCTCC-AAATTAACCATATAATTGGTCACAAAA-AGGCCT  95

seq1  CAACAGATTCAAAAATATTGAAATTGTCCCATACATCCTATCAGATCACC  147
      || ||||| ||||||||||| ||||||||||| |||||||||||||||||
seq2  CAGCAGATACAAAAATATTG-AATTGTCCCATGCATCCTATCAGATCACC  144

seq1  ATGCACTGAGGCTGATCTTCAATAACAAAATAAATAATAGAAAGCCAACA  197
      ||| ||| |||||||||| |||||||||||||||||||||||||||||||
seq2  ATGGACTAAGGCTGATCTCCAATAACAAAATAAATAATAGAAAGCCAACA  194

seq1  TTCATGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGA  247
      ||||  ||||||||||   |||||||||||||||||||||||||||||||
seq2  TTCAAATGGAAACTGA--CACACTCTTCTCAATGATACCTTGGTCAAGGA  242

seq1  AGGAATAAAGAAAGAAATTAAGGATTTCTTAGAGTTCAATGAAAATGAAG  297
      |||||||||||||||||||||||| ||||||||||| |||||||||||||
seq2  AGGAATAAAGAAAGAAATTAAGGACTTCTTAGAGTTTAATGAAAATGAAG  292

seq1  CCACTTCATACCCAAACTTATGGGACACAATGAAAGCATTTCTAAGAGGA  347
      ||||  |||| || ||||||||||||||||||||||||||||||||||||
seq2  CCACAACATATCCCAACTTATGGGACACAATGAAAGCATTTCTAAGAGGA  342

seq1  AAACTCATAGCTCTGAGTGCCTCCAAAAAGAAACTAGAGAGAGCATACAT  397
      |||||||||||| |||||||||||||||||||||||||||||||| ||  
seq2  AAACTCATAGCTATGAGTGCCTCCAAAAAGAAACTAGAGAGAGCACACCC  392

seq1  TAGCAGCTTGACAACACACCTAAAAGTTCTAGAACAAAAGGAAGCAAATT  447
      |||||||||| ||| || |||||||| | ||||||| |||||||||||||
seq2  TAGCAGCTTGGCAATACCCCTAAAAGCTTTAGAACATAAGGAAGCAAATT  442

seq1  CACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGCGAAATC  497
      |||||||||||||||||||| ||| |||||||||||||||||| ||||||
seq2  CACCCAAGAGGAGTAGACGGAAGGTAATAATCAAACTCAGGGGAGAAATC  492

seq1  AACCAAGTGGAAACAAGAA  516
      |||||||||||||||||||
seq2  AACCAAGTGGAAACAAGAA  511