BAC Information

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BAC

Clone NameB6Ng01-149B16
Chromosome18 (Build37)
Map Location 86,458,548 - 86,564,228
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC665382, LOC545269, LOC545270, LOC665402
Downstream geneNeto1, Cbln2, LOC100039872, LOC100039881, LOC665437, LOC435580, LOC546719, LOC383318
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149B16.bB6Ng01-149B16.g
ACCDH945533DH945534
length5631,130
definitionDH945533|Mus musculus domesticus DNA, BAC clone: B6Ng01-149B16, 5' end.DH945534|Mus musculus domesticus DNA, BAC clone: B6Ng01-149B16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,563,660 - 86,564,228)(86,458,548 - 86,459,694)
sequence
cccactgcatctcagtggagggtgaaaggcgtggaagagggaggggccat
catgcaaaaaaaaaaaaaaaaaaaatgcccctttgagttggggttttcac
tttttaaaggttagaaatgactgtcttccgtccctccaactggagctttc
gagtcccctctcttctaaagggtgaataaatacttcaccctctagccagc
tggtctaagagcgaaagcccgggcgctggaagaaaaaggaaagcagcggt
aaaagtttcacgtttaatcactagaggagattcgctggagaatcacccca
aactgctactgtaaatacgcagtcccttaaaatgtgcttttctgtcggaa
aaatactcaaaatcgtctaaaagcaaacacagatcaccccaccctaatac
atccaaacgctcgcgcgctgggcgggtgaaactcacaggagaaaggagtt
gctggaaaacagcaggaagagcccccaattcggaaaattacggataggtg
aatgcgaaatcacagtaaacacgaagaggcagcgccgtggagttggtgag
gggggcggggagg
gaattccagaacagaacagaggggctgagaagggcagcatgaggacattg
gtgtttatcatgtgagatgggaagccaatatcagatttctgagcaaagaa
atatatctttgtgtctttacaatactgaaaatatactacataagagcaat
aagactcatggaggaagcaatgacaggaactgtagaaaactggaccatcg
tgggtcaaagtgcaaggattgaatgtgttcaatcctttgtggaaagtcaa
tcactgcaggaaaattagtggctgaatagaagtgtcatcacctggctttc
attgcaggatcacgatggtcaacgccatgtgctgatgtggctgagtcatc
atgactagataattgtggggcaatgggctatgcacagaaagcctgctttc
cagttgaggatagatcttgaaccccagactggtagtgataattcacttac
aagggacagaaagagttctctcatgtctcctggaccctggatcctgtcag
agttactgccccccaaaacccccacaggagaagcgtggctattgttgctt
ttttctgacctatcctgtcctgactcagtttagagaggctcagagttacc
aagcagaggctttgtctccctgcttgcactcacttcccctccctggggcc
ttcccacccagcctggatagagatctccctgtaaaaactctggtacccaa
gcccacatataattggacagataattagatatttttgtaagaggatgctt
tagaaacaattaagattccaggacagccagggctacacagagaacctctg
tctcggcctttttgtatgttacagacaccatcatgtgtatcatgtgggac
tcatttggaatcatgcctgtgtagtgtttcttttgcctcttgtatgtcag
acacctgtttggctgtctggagagaaggaagaaggacactgaccacattt
gacactgcccctttacatggaattccagtgaacatgaatctacctttcag
tcttcacctaaaaatggttgtgcctactggaaaatagctgtccagttcct
caaattccatgctttaaagtttctatggctggtcagttccagtagcattt
gaatgacagcatcatagttcctgctcccac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_86563660_86564228
seq2: B6Ng01-149B16.b_46_614 (reverse)

seq1  CCTCCCCGCCCCCCTCACCAACTCCACGGCGCTGCCTCTTCGTGTTTACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCGCCCCCCTCACCAACTCCACGGCGCTGCCTCTTCGTGTTTACT  50

seq1  GTGATTTCGCATTCACCTATCCGTAATTTTCCGAATTGGGGGCTCTTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTTCGCATTCACCTATCCGTAATTTTCCGAATTGGGGGCTCTTCCT  100

seq1  GCTGTTTTCCAGCAACTCCTTTCTCCTGTGAGTTTCACCCGCCCAGCGCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTTCCAGCAACTCCTTTCTCCTGTGAGTTTCACCCGCCCAGCGCG  150

seq1  CGAGCGTTTGGATGTATTAGGGTGGGGTGATCTGTGTTTGCTTTTAGACG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCGTTTGGATGTATTAGGGTGGGGTGATCTGTGTTTGCTTTTAGACG  200

seq1  ATTTTGAGTATTTTTCCGACAGAAAAGCACATTTTAAGGGACTGCGTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGAGTATTTTTCCGACAGAAAAGCACATTTTAAGGGACTGCGTATT  250

seq1  TACAGTAGCAGTTTGGGGTGATTCTCCAGCGAATCTCCTCTAGTGATTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTAGCAGTTTGGGGTGATTCTCCAGCGAATCTCCTCTAGTGATTAA  300

seq1  ACGTGAAACTTTTACCGCTGCTTTCCTTTTTCTTCCAGCGCCCGGGCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGAAACTTTTACCGCTGCTTTCCTTTTTCTTCCAGCGCCCGGGCTTT  350

seq1  CGCTCTTAGACCAGCTGGCTAGAGGGTGAAGTATTTATTCACCCTTTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCTTAGACCAGCTGGCTAGAGGGTGAAGTATTTATTCACCCTTTAGA  400

seq1  AGAGAGGGGACTCGAAAGCTCCAGTTGGAGGGACGGAAGACAGTCATTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGGGACTCGAAAGCTCCAGTTGGAGGGACGGAAGACAGTCATTTC  450

seq1  TAACCTTTAAAAAGTGAAAACCCCAACTCAAAGGGGCATTTTTTTTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTTTAAAAAGTGAAAACCCCAACTCAAAGGGGCATTTTTTTTTTTT  500

seq1  TTTTTTTTGCATGATGGCCCCTCCCTCTTCCACGCCTTTCACCCTCCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTGCATGATGGCCCCTCCCTCTTCCACGCCTTTCACCCTCCACT  550

seq1  GAGATGCAGTGGGGAATTC  569
      |||||||||||||||||||
seq2  GAGATGCAGTGGGGAATTC  569

seq1: chr18_86458548_86459694
seq2: B6Ng01-149B16.g_68_1197

seq1  GAATTCCAGAACAGAACAGAGGGGCTGAGAAGGGCAGCATGAGGACATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAACAGAACAGAGGGGCTGAGAAGGGCAGCATGAGGACATTG  50

seq1  GTGTTTATCATGTGAGATGGGAAGCCAATATCAGATTTCTGAGCAAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTATCATGTGAGATGGGAAGCCAATATCAGATTTCTGAGCAAAGAA  100

seq1  ATATATCTTTGTGTCTTTACAATACTGAAAATATACTACATAAGAGCAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCTTTGTGTCTTTACAATACTGAAAATATACTACATAAGAGCAAT  150

seq1  AAGACTCATGGAGGAAGCAATGACAGGAACTGTAGAAAACTGGACCATCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTCATGGAGGAAGCAATGACAGGAACTGTAGAAAACTGGACCATCG  200

seq1  TGGGTCAAAGTGCAAGGATTGAATGTGTTCAATCCTTTGTGGAAAGTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCAAAGTGCAAGGATTGAATGTGTTCAATCCTTTGTGGAAAGTCAA  250

seq1  TCACTGCAGGAAAATTAGTGGCTGAATAGAAGTGTCATCACCTGGCTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGCAGGAAAATTAGTGGCTGAATAGAAGTGTCATCACCTGGCTTTC  300

seq1  ATTGCAGGATCACGATGGTCAACGCCATGTGCTGATGTGGCTGAGTCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAGGATCACGATGGTCAACGCCATGTGCTGATGTGGCTGAGTCATC  350

seq1  ATGACTAGATAATTGTGGGGCAATGGGCTATGCACAGAAAGCCTGCTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTAGATAATTGTGGGGCAATGGGCTATGCACAGAAAGCCTGCTTTC  400

seq1  CAGTTGAGGATAGATCTTGAACCCCAGACTGGTAGTGATAATTCACTTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGAGGATAGATCTTGAACCCCAGACTGGTAGTGATAATTCACTTAC  450

seq1  AAGGGACAGAAAGAGTTCTCTCATGTCTCCTGGACCCTGGATCCTGTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGACAGAAAGAGTTCTCTCATGTCTCCTGGACCCTGGATCCTGTCAG  500

seq1  AGTTACTGCCCCCCAAAACCCCCACAGGAGAAGCGTGGCTATTGTTGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACTGCCCCCCAAAACCCCCACAGGAGAAGCGTGGCTATTGTTGCTT  550

seq1  TTTTCTGACCTATCCTGTCCTGACTCAGTTTAGAGAGGCTCAGAGTTACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGACCTATCCTGTCCTGACTCAGTTTAGAGAGGCTCAGAGTTACC  600

seq1  AAGCAGAGGCTTTGTCTCCCTGCTTGCACTCACTTCCCCTCCCTGGGGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGAGGCTTTGTCTCCCTGCTTGCACTCACTTCCCCTCCCTGGGGCC  650

seq1  TTCCCACCCAGCCTGGATAGAGATCTCCCTGTAAAAACTCTGGTACCCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCACCCAGCCTGGATAGAGATCTCCCTGTAAAAACTCTGGTACCCAA  700

seq1  GCCCACATATAATTGGACAGATAATTAGATATTTTTGTAAGAGGATGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACATATAATTGGACAGATAATTAGATATTTTTGTAAGAGGATGCTT  750

seq1  TAGAAACAATTAAGATTCCAGGACAGCCAGGGCTACACAGAGAACCTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAACAATTAAGATTCCAGGACAGCCAGGGCTACACAGAGAACCTCTG  800

seq1  TCTCAGGCCTTTTTGTATGTTACAGACACCATCATGTGTATCAGGTGGGA  850
      |||| |||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCTC-GGCCTTTTTGTATGTTACAGACACCATCATGTGTATCATGTGGGA  849

seq1  CTCA-TTGGAATCATGCCTGTGTAGTGTTTCTTTTGCCTCTTGTATGTCA  899
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTGGAATCATGCCTGTGTAGTGTTTCTTTTGCCTCTTGTATGTCA  899

seq1  GACACCTGTTGGGCTGTCTGGAGAGAAGGAAGAAGGACACTGACCACATT  949
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GACACCTGTTTGGCTGTCTGGAGAGAAGGAAGAAGGACACTGACCACATT  949

seq1  TGACACTGCCCCTTTACATGGGAATTCCAGGTGAACATGAATCTACCTTT  999
      ||||||||||||||||||| ||||||||| ||||||||||||||||||||
seq2  TGACACTGCCCCTTTACAT-GGAATTCCA-GTGAACATGAATCTACCTTT  997

seq1  CAGGTTCTTCACCTAAAAATGGGTTTGTGCCTAACTGG-ATATAGCTGTT  1048
      |||  |||||||||||||||||  |||||||| ||||| | |||||||| 
seq2  CAG--TCTTCACCTAAAAATGG--TTGTGCCT-ACTGGAAAATAGCTGTC  1042

seq1  CAGTTCCTCAAATGTCACATGCTTTTAAAGTTTCTAGTGCTGAGTCAGTC  1098
      ||||||||||||| || ||||| |||||||||||||  |||| |||||| 
seq2  CAGTTCCTCAAAT-TC-CATGC-TTTAAAGTTTCTATGGCTG-GTCAGT-  1087

seq1  TCCAAGTAAGCATTTTGTAAATGACAGCATCATAGTCCCTGCCTCCCAC  1147
      ||| ||| ||||||   | ||||||||||||||||| |||| |||||||
seq2  TCC-AGT-AGCATT---TGAATGACAGCATCATAGTTCCTG-CTCCCAC  1130