BAC Information

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BAC

Clone NameB6Ng01-149C09
Chromosome18 (Build37)
Map Location 73,687,402 - 73,892,953
singlet/doubletdoublet
Overlap geneRkhd2, Smad4
Upstream geneLOC100043411, LOC100042955
Downstream geneElac1, Me2, Mro, Mapk4, 2810433K01Rik, Cxxc1, EG435570, Mbd1, Ccdc11, LOC628298, LOC668124, LOC668126, Myo5b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149C09.bB6Ng01-149C09.g
ACCDH945565DH945566
length9891,166
definitionDH945565|Mus musculus domesticus DNA, BAC clone: B6Ng01-149C09, 5' end.DH945566|Mus musculus domesticus DNA, BAC clone: B6Ng01-149C09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,687,402 - 73,688,295)(73,891,776 - 73,892,953)
sequence
gaattctcacattggttacctgagctctggagtaagaaatattttggttg
gaaaagctaaatggaagccttgggagttgcctgtgtcagggaaaataatg
aaccaaaaccaacaccttatccctggaaggactgtaggatttagtgccac
catggaagacttgaataaaagatgtaatttcccctttaactctcctatct
gaccagtgcagaagacgggtggtttatagagaatgaaggttgactatgta
aaaactcaatcaagtagtgactccaattgcagccactggaccagatgtgg
tgttctgacttgagcagactaacatatctcctggtacatggtatacaagt
gttgacagaaacagtgctgcccagataaatggattaaatgcaatgcattg
acaggatatagcatcttctaggagacatagctctgaatttgactgtgaag
gagtttctaggctggattacctgaggtgtgaagattcatatgggcagagc
catacaccatgggcaacagtcagcgactgaataaaaaggaggaagtgggc
tgagcatggccattcacttgcctcttcttcctgaaggtggatgcagtgtg
accagctgccacctgcctctgatgctatgccttctccactgtaatgaact
tcacgctcaagtgagacaaatacactctttttattgatctaccaaatgcc
ctttctcttagcatctgtccagaaggcccaccagaagcaatttgctttga
attggcaaggctagcaatttaccttgacagttttacctcaaggatatatt
aactctccagccctgtgtcaaaacttagtttgaagggatcttgattatct
atctctttcatcaaatatcacagtggtctacgtgattggaccaagtgagc
aggagatggccactgcttggactcttgggtacacagatgtacatcagaga
tagggggaatccaaccaaattcagtgcttcatgaaattc
gaattcactggacaactatcactaccaccagttgtagaatatttttatta
tcctccagagaaaccccataatgctgcagtcagtcacccccactcttcac
cttgccttcccaagctcccacgctatgggaaacatcagatctggctaatt
ctgaatatttcatatgaataaacttgtgcaacactcctttttataaatgg
cttcttcctttataaatggcttcttccattcagcatgttttcaatatgca
tcccatcagtaatttttcctttttatggctaaataatacttatggatatc
ctgcattttatttgtcgtccttcagtaggtcagggatagatagattattt
tgaaacattttctatagaatacctctattaggaatgtaaagagggatatt
ggtacagacagtataaatattaatatgataaaaatgatcccatagataat
ttttatattaggtaaaattaccaaagcaactttttaagaaaacagatgtt
gggagctgaccatggtggtgcatcttggtgctcctggcatttgggaggcc
gaagcagggccagcttgggccactcagtcaaaccctgtctcaaaaaacaa
acaaacaaacaaacaaaataaccaacaaaaacacataccaaaagcaaact
ccctcctttcccagttagacaaatgcagtagtgtttgcctgtagtcccaa
ctgcttgggggaaggcctgtaacccatgagtttcaggccagctatgccaa
cagagtaagtccctgtatcaaaacttaaaaagaagaaaaggaacaacccc
aaaacagtttaccagaacgtatatattactttaaaaatagttgaagatac
atagtataaaaattttcaaagcgttcataagaatattatttttaaaagtt
gattttatggctaaaatcttacaagttttctgatcttcattagagattag
tctaaagaaataaacacaccttccttccacagacacttctggattgtatt
aaaaaggaacctgccccacctcattttatgaggctgggttcatcagatga
tgtcaagtggaaggacattaagaaaaaggaaattccctactatcttcctc
ataaaacctgagaaagaccattagctaattgaattcaaggacatatagga
ggactcttcgtaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_73687402_73688295
seq2: B6Ng01-149C09.b_51_945

seq1  GAATTCTCACATTGGTTACCTGAGCTCTGGAGTAAGAAATATTTTGGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACATTGGTTACCTGAGCTCTGGAGTAAGAAATATTTTGGTTG  50

seq1  GAAAAGCTAAATGGAAGCCTTGGGAGTTGCCTGTGTCAGGGAAAATAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGCTAAATGGAAGCCTTGGGAGTTGCCTGTGTCAGGGAAAATAATG  100

seq1  AACCAAAACCAACACCTTATCCCTGGAAGGACTGTAGGATTTAGTGCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAAACCAACACCTTATCCCTGGAAGGACTGTAGGATTTAGTGCCAC  150

seq1  CATGGAAGACTTGAATAAAAGATGTAATTTCCCCTTTAACTCTCCTATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAAGACTTGAATAAAAGATGTAATTTCCCCTTTAACTCTCCTATCT  200

seq1  GACCAGTGCAGAAGACGGGTGGTTTATAGAGAATGAAGGTTGACTATGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGTGCAGAAGACGGGTGGTTTATAGAGAATGAAGGTTGACTATGTA  250

seq1  AAAACTCAATCAAGTAGTGACTCCAATTGCAGCCACTGGACCAGATGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTCAATCAAGTAGTGACTCCAATTGCAGCCACTGGACCAGATGTGG  300

seq1  TGTTCTGACTTGAGCAGACTAACATATCTCCTGGTACATGGTATACAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGACTTGAGCAGACTAACATATCTCCTGGTACATGGTATACAAGT  350

seq1  GTTGACAGAAACAGTGCTGCCCAGATAAATGGATTAAATGCAATGCATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACAGAAACAGTGCTGCCCAGATAAATGGATTAAATGCAATGCATTG  400

seq1  ACAGGATATAGCATCTTCTAGGAGACATAGCTCTGAATTTGACTGTGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGATATAGCATCTTCTAGGAGACATAGCTCTGAATTTGACTGTGAAG  450

seq1  GAGTTTCTAGGCTGGATTACCTGAGGTGTGAAGATTCATATGGGCAGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTCTAGGCTGGATTACCTGAGGTGTGAAGATTCATATGGGCAGAGC  500

seq1  CATACACCATGGGCAACAGTCAGCGACTGAATAAAAAGGAGGAAGTGGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACCATGGGCAACAGTCAGCGACTGAATAAAAAGGAGGAAGTGGGC  550

seq1  TGAGCATGGCCATTCACTTGCCTCTTCTTCCTGAAGGTGGATGCAGTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCATGGCCATTCACTTGCCTCTTCTTCCTGAAGGTGGATGCAGTGTG  600

seq1  ACCAGCTGCCACCTGCCTCTGATGCTATGCCTTCTCCACTGTAATGAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCTGCCACCTGCCTCTGATGCTATGCCTTCTCCACTGTAATGAACT  650

seq1  TCACGCTCAAGTGAGACAAATACACTCTTTTTATTGATCTACCAAATGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGCTCAAGTGAGACAAATACACTCTTTTTATTGATCTACCAAATGCC  700

seq1  C-TTCTCTTAGCATCTGTCCAGAAGGCCCACCAGAAGCAATTTGCTTTGA  749
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTTAGCATCTGTCCAGAAGGCCCACCAGAAGCAATTTGCTTTGA  750

seq1  ATTGGCAAGGCTAGCAATTTACCTTGACAGTTTTACCTCAAGGATATATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCAAGGCTAGCAATTTACCTTGACAGTTTTACCTCAAGGATATATT  800

seq1  AACTCTCCAGCCCTGTGTCAAAACTTAGTTTGAAGGGATCTTGATTATCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTCCAGCCCTGTGTCAAAACTTAGTTTGAAGGGATCTTGATTATCT  850

seq1  ATCTCTTTCATCAAATATCACAGTGGTCTACGTGATTGGACCAAG  894
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTTCATCAAATATCACAGTGGTCTACGTGATTGGACCAAG  895

seq1: chr18_73891776_73892953
seq2: B6Ng01-149C09.g_69_1234 (reverse)

seq1  TCCCTTACGAAGATGTCTTTCTTAATATGTCATTGGATTCAATTAGCTAA  50
      |||| |||||||| ||| | ||  ||||||| ||| ||||||||||||||
seq2  TCCC-TACGAAGA-GTCCTCCT--ATATGTCCTTGAATTCAATTAGCTAA  46

seq1  TTGTCTTCTTCAGGGTTTTATGAGGAAGATTAGTGAGTGATTTTCCTTTC  100
      | |||||  ||| |||||||||||||||| |||| || || |||||||| 
seq2  TGGTCTTTCTCA-GGTTTTATGAGGAAGA-TAGT-AGGGAATTTCCTTTT  93

seq1  TCTTAATGTCCTTCCACTTTGACATCATCTGGATTAAACCAGCCTCATAA  150
      ||||||||||||||||| |||||||||||| ||| || ||||||||||||
seq2  TCTTAATGTCCTTCCAC-TTGACATCATCT-GATGAACCCAGCCTCATAA  141

seq1  AATGAGGTGGGGCAGGTTCCCTTTTTAATACAATCCAGAAGTGTCTGTGG  200
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AATGAGGTGGGGCAGGTT-CCTTTTTAATACAATCCAGAAGTGTCTGTGG  190

seq1  AAGGAAGGTGTGTTTATTTCTTTAGACTAATTCTCTAATGAAGATCAGAA  250
      |||||||||||||||||||||||||||||| ||||||||||||||||| |
seq2  AAGGAAGGTGTGTTTATTTCTTTAGACTAA-TCTCTAATGAAGATCAG-A  238

seq1  AAACTTGTAAGATTTTTAGCCATAAATTCAACTTTTAAAAATAATATTCT  300
      |||||||||||| ||||||||||||| |||||||||||||||||||||||
seq2  AAACTTGTAAGA-TTTTAGCCATAAAATCAACTTTTAAAAATAATATTCT  287

seq1  TATGAACGCTTTGAAAATTTTTATACTATGTATCTTCAACTATTTTTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAACGCTTTGAAAATTTTTATACTATGTATCTTCAACTATTTTTAAA  337

seq1  GTAATATATACGTTCTGGTAAACTGTTTTGGGGTTGTTCCTTTTCTTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATATATACGTTCTGGTAAACTGTTTTGGGGTTGTTCCTTTTCTTCTT  387

seq1  TTTAAGTTTTGATACAGGGACTTACTCTGTTGGCATAGCTGGCCTGAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTTTTGATACAGGGACTTACTCTGTTGGCATAGCTGGCCTGAAAC  437

seq1  TCATGGGTTACAGGCCTTCCCCCAAGCAGTTGGGACTACAGGCAAACACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGGTTACAGGCCTTCCCCCAAGCAGTTGGGACTACAGGCAAACACT  487

seq1  ACTGCATTTGTCTAACTGGGAAAGGAGGGAGTTTGC-TTTGGTATGTGTT  549
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACTGCATTTGTCTAACTGGGAAAGGAGGGAGTTTGCTTTTGGTATGTGTT  537

seq1  TTTGTTGGTTATTTTGTTTGTTTGTTTGTTTGTTTTTTGAGACAGGGTTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGGTTATTTTGTTTGTTTGTTTGTTTGTTTTTTGAGACAGGGTTT  587

seq1  GACTGAGTGGCCCAAGCTGGCCCTGCTTCGGCCTCCCAAATGCCAGGAGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAGTGGCCCAAGCTGGCCCTGCTTCGGCCTCCCAAATGCCAGGAGC  637

seq1  ACCAAGATGCACCACCATGGTCAGCTCCCAACATCTGTTTTCTTAAAAAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGATGCACCACCATGGTCAGCTCCCAACATCTGTTTTCTTAAAAAG  687

seq1  TTGCTTTGGTAATTTTACCTAATATAAAAATTATCTATGGGATCATTTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTGGTAATTTTACCTAATATAAAAATTATCTATGGGATCATTTTT  737

seq1  ATCATATTAATATTTATACTGTCTGTACCAATATCCCTCTTTACATTCCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATTAATATTTATACTGTCTGTACCAATATCCCTCTTTACATTCCT  787

seq1  AATAGAGGTATTCTATAGAAAATGTTTCAAAATAATCTATCTATCCCTGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAGGTATTCTATAGAAAATGTTTCAAAATAATCTATCTATCCCTGA  837

seq1  CCTACTGAAGGACGACAAATAAAATGCAGGATATCCATAAGTATTATTTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTGAAGGACGACAAATAAAATGCAGGATATCCATAAGTATTATTTA  887

seq1  GCCATAAAAAGGAAAAATTACTGATGGGATGCATATTGAAAACATGCTGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATAAAAAGGAAAAATTACTGATGGGATGCATATTGAAAACATGCTGA  937

seq1  ATGGAAGAAGCCATTTATAAAGGAAGAAGCCATTTATAAAAAGGAGTGTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGAAGCCATTTATAAAGGAAGAAGCCATTTATAAAAAGGAGTGTT  987

seq1  GCACAAGTTTATTCATATGAAATATTCAGAATTAGCCAGATCTGATGTTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAGTTTATTCATATGAAATATTCAGAATTAGCCAGATCTGATGTTT  1037

seq1  CCCATAGCGTGGGAGCTTGGGAAGGCAAGGTGAAGAGTGGGGGTGACTGA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATAGCGTGGGAGCTTGGGAAGGCAAGGTGAAGAGTGGGGGTGACTGA  1087

seq1  CTGCAGCATTATGGGGTTTCTCTGGAGGATAATAAAAATATTCTACAACT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGCATTATGGGGTTTCTCTGGAGGATAATAAAAATATTCTACAACT  1137

seq1  GGTGGTAGTGATAGTTGTCCAGTGAATTC  1178
      |||||||||||||||||||||||||||||
seq2  GGTGGTAGTGATAGTTGTCCAGTGAATTC  1166