BAC Information

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BAC

Clone NameB6Ng01-149D03
Chromosome18 (Build37)
Map Location 52,625,777 - 52,808,487
singlet/doubletdoublet
Overlap geneSrfbp1, Lox, Zfp474, 1700034E13Rik
Upstream geneEG240289, Ftmt
Downstream geneGykl1, Sncaip, A730036E13Rik, LOC667317, LOC100042430, Snx2, Gm1859, Snx24, Ppic, Prdm6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149D03.bB6Ng01-149D03.g
ACCDH945601DH945602
length3171,047
definitionDH945601|Mus musculus domesticus DNA, BAC clone: B6Ng01-149D03, 5' end.DH945602|Mus musculus domesticus DNA, BAC clone: B6Ng01-149D03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,808,171 - 52,808,487)(52,625,777 - 52,626,837)
sequence
agtgacaaaaaaccatgactttgttgtgcatctgggatccgaaaccaaat
ccaccatctgtggtcaacgaggaaccatgtgctgcctctgagacaggcat
tggctttgagagaaaccagcaaagcccccatttatgcttctgctctgttc
tcaggactgccttaaaagtcacagtgcttacaacactgtgagttcttatc
cccttgggctgtgagctgtgggctgtgagctgtgggctgtgagctgtggg
ctgtgagctgtgggctgtgagctgtgggctgtgagctgtgggctgtgggg
tgtgtgtgtggggtgtg
gaattcaaactgaggcataagttgttctaacaaattccagatctttagcg
atcgtgtacgcacgcccggcctcatttctttttctcctggtactgtccgt
cccatttgtccccttcacagttttttttctgcactcttatctccgatttc
tctaacctggtttggcgcttttaccttcaccaccacctccaccgtagtgt
gttactgtcaccaggccaccttgagcttcggatatatgtttttccccaac
ttttatctggcatcctaaaaaaagttaagttttgcagagcaaggatcgga
aagaacatctcacaactacagacatccaaagaattgccgtccatatgcag
catgctgtccatatgcaggtcactgttaaggttacacagccatgaatgat
ggtctttgtgcctttttttaaaaatcttttctggtaacctataatagaaa
ataaacaaagattcctatccctccaaaaaaacagtgcagaagtttttgaa
ggaggcaaagtcagatgtgagatagagtccttaatcttcttttgaggata
tatgggaattgcaagcaataattccctaaggtaattgaaggccttataaa
cagagaaaggttggtgtgaaactctgaataaaaagggcctagaagccggg
cggtggtgtctcccagcacttgggaggcagaggcaggcggatttctgagt
tcgaggacagcctggtctacaaagtgagttctaggacagccagggctata
cagagaaactctgtcttgaaaaaaacaaaggggggggggctagaaaacta
atgagaattaacaaatatgctactactgtctgcttgccagattgagtctt
cattcagtaggaagtggggtatcaaggaggtttttagaatttattgattt
tttttttcctcatttaaacttctgtttgtgcaagaaactgttggttgtgt
cttagtaggggtttacttctgtgaacagacaccatgaccagtgacttttt
aagacagcgttatggagctggcttacggttcaagaggtcagtcatta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_52808171_52808487
seq2: B6Ng01-149D03.b_53_369 (reverse)

seq1  CACACCCCACACACACACCCCACAGCCCACAGCTCACAGCCCACAGCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCCCACACACACACCCCACAGCCCACAGCTCACAGCCCACAGCTCA  50

seq1  CAGCCCACAGCTCACAGCCCACAGCTCACAGCCCACAGCTCACAGCCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCACAGCTCACAGCCCACAGCTCACAGCCCACAGCTCACAGCCCAC  100

seq1  AGCTCACAGCCCAAGGGGATAAGAACTCACAGTGTTGTAAGCACTGTGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCACAGCCCAAGGGGATAAGAACTCACAGTGTTGTAAGCACTGTGAC  150

seq1  TTTTAAGGCAGTCCTGAGAACAGAGCAGAAGCATAAATGGGGGCTTTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGGCAGTCCTGAGAACAGAGCAGAAGCATAAATGGGGGCTTTGCT  200

seq1  GGTTTCTCTCAAAGCCAATGCCTGTCTCAGAGGCAGCACATGGTTCCTCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTCTCAAAGCCAATGCCTGTCTCAGAGGCAGCACATGGTTCCTCG  250

seq1  TTGACCACAGATGGTGGATTTGGTTTCGGATCCCAGATGCACAACAAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCACAGATGGTGGATTTGGTTTCGGATCCCAGATGCACAACAAAGT  300

seq1  CATGGTTTTTTGTCACT  317
      |||||||||||||||||
seq2  CATGGTTTTTTGTCACT  317

seq1: chr18_52625777_52626837
seq2: B6Ng01-149D03.g_64_1110

seq1  GAATTCAAACTGAGGCATAAGTTGTTCTAACAAATTCCAGATCTTTAGCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACTGAGGCATAAGTTGTTCTAACAAATTCCAGATCTTTAGCG  50

seq1  ATCGTGTACGCACGCCCGGCCTCATTTCTTTTTCTCCTGGTACTGTCCGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTGTACGCACGCCCGGCCTCATTTCTTTTTCTCCTGGTACTGTCCGT  100

seq1  CCCATTTGTCCCCTTCACAGTTTTTTTTCTGCACTCTTATCTCCGATTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTGTCCCCTTCACAGTTTTTTTTCTGCACTCTTATCTCCGATTTC  150

seq1  TCTAACCTGGTTTGGCGCTTTTACCTTCACCACCACCTCCACCGTAGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACCTGGTTTGGCGCTTTTACCTTCACCACCACCTCCACCGTAGTGT  200

seq1  GTTACTGTCACCAGGCCACCTTGAGCTTCGGATATATGTTTTTCCCCAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTGTCACCAGGCCACCTTGAGCTTCGGATATATGTTTTTCCCCAAC  250

seq1  TTTTATCTGGCATCCTAAAAAAAGTTAAGTTTTGCAGAGCAAGGATCGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCTGGCATCCTAAAAAAAGTTAAGTTTTGCAGAGCAAGGATCGGA  300

seq1  AAGAACATCTCACAACTACAGACATCCAAAGAATTGCCGTCCATATGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACATCTCACAACTACAGACATCCAAAGAATTGCCGTCCATATGCAG  350

seq1  CATGCTGTCCATATGCAGGTCACTGTTAAGGTTACACAGCCATGAATGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTGTCCATATGCAGGTCACTGTTAAGGTTACACAGCCATGAATGAT  400

seq1  GGTCTTTGTGCCTTTTTTTAAAAATCTTTTCTGGTAACCTATAATAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTTGTGCCTTTTTTTAAAAATCTTTTCTGGTAACCTATAATAGAAA  450

seq1  ATAAACAAAGATTCCTATCCCTCCAAAAAAACAGTGCAGAAGTTTTTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACAAAGATTCCTATCCCTCCAAAAAAACAGTGCAGAAGTTTTTGAA  500

seq1  GGAGGCAAAGTCAGATGTGAGATAGAGTCCTTAATCTTCTTTTGAGGATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAAAGTCAGATGTGAGATAGAGTCCTTAATCTTCTTTTGAGGATA  550

seq1  TATGGGAATTGCAAGCAATAATTCCCTAAGGTAATTGAAGGCCTTATAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGAATTGCAAGCAATAATTCCCTAAGGTAATTGAAGGCCTTATAAA  600

seq1  CAGAGAAAGGTTGGTGTGAAACTCTGAATAAAAAGGGCCTAGAAGCCGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAAGGTTGGTGTGAAACTCTGAATAAAAAGGGCCTAGAAGCCGGG  650

seq1  CGGTGGTGTCTCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGGTGTCTCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGT  700

seq1  TCGAGGACAGCCTGGTCTACAAAGTGAGTTCTAGGACAGCCAGGGCTATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGGACAGCCTGGTCTACAAAGTGAGTTCTAGGACAGCCAGGGCTATA  750

seq1  CAGAGAAACTCTGTCTTGAAAAAAACAAAGGGGGGGGGGCTAGAAAACTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAACTCTGTCTTGAAAAAAACAAAGGGGGGGGGGCTAGAAAACTA  800

seq1  ATGAGAATTAACAAATATGCTACTACTGTCTGCTTGCCAGATTGAGTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAATTAACAAATATGCTACTACTGTCTGCTTGCCAGATTGAGTCTT  850

seq1  CATTCAGTAGGAAGTGGGGTATCAAGGAGGTATTTAGAATTTATTGATTT  900
      ||||||||||||||||||||||||||||||| ||||||||||||||| ||
seq2  CATTCAGTAGGAAGTGGGGTATCAAGGAGGTTTTTAGAATTTATTGA-TT  899

seq1  TTTTTTTTCCTCATTTAAACTTCTGTTTTGTGCAAGAAAACTGTTGGTTG  950
      ||||||||||||||||||||||||| |||||||||| |||||||||||| 
seq2  TTTTTTTTCCTCATTTAAACTTCTG-TTTGTGCAAG-AAACTGTTGGTT-  946

seq1  GTGTCTTAGTTAGGGTTTTACTTCTGTGAACAGACACCATGACCAAGGTG  1000
      ||||||||| ||||| |||||||||||||||||||||||||||||  |||
seq2  GTGTCTTAG-TAGGGGTTTACTTCTGTGAACAGACACCATGACCA--GTG  993

seq1  ACTTTTATAAGAACAGCGTTTAATTGGAGCTGGCTTACAGGTTC-AGAGG  1049
      |||||| |||| ||||||||    |||||||||||||| ||||| |||||
seq2  ACTTTT-TAAG-ACAGCGTT---ATGGAGCTGGCTTAC-GGTTCAAGAGG  1037

seq1  TTCAGTCCATTA  1061
       ||||| |||||
seq2  -TCAGT-CATTA  1047