BAC Information

Click to search

BAC

Clone NameB6Ng01-149G03
Chromosome18 (Build37)
Map Location 29,352,466 - 29,478,552
singlet/doubletdoublet
Overlap geneLOC100040930
Upstream geneEG625997, BC051408
Downstream gene4930578E11Rik, LOC666073, Pik3c3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149G03.bB6Ng01-149G03.g
ACCDH945734DH945735
length925859
definitionDH945734|Mus musculus domesticus DNA, BAC clone: B6Ng01-149G03, 5' end.DH945735|Mus musculus domesticus DNA, BAC clone: B6Ng01-149G03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,352,466 - 29,353,086)(29,477,695 - 29,478,552)
sequence
gaattccccctctagaagatattgagtaaaaacagtaggtattttgctca
aggaaatttcgatcctgtagtttgaagtattactcccaatgcttcctcta
tttttatttaaagtggaccattcttttttttttttttttttttttttttc
cattttttattaggtatttagctcatttacatttccaatgctataccaaa
agtcccccttacccacccacccccactcccctacccacccactccccccc
tttggccctggcgttcccctgtaccggggcacacaaagtctgcgtgtcca
atgggcctctctttccagtgatggccgactaggccatcttttgatacata
tgcagctagagtcaagagctcaggggtactggttagttcataatgttgtt
ccacctatagggttgaagatccctttagctccttgggtactttctctagc
tcctccattgggagccctgtgatccatccattagctgactgtgagcatcc
acttctgtgtttgctaggccccggcatagtctcacaagaaacagctacat
ctgggtcctttcgataaaatcttgctagtatatgcaatggtgtcagcgtt
tggatgctgattatggggtggatccctggatatggcagtctctacatggt
ccatcctttcatctcagctccaaactttgtttctgtaactccttccatgg
gtgtttttgttcccacttctaaggaggggcatagtgtccacacttcagtc
ttcatttttcttgagtttcatgtgtttaggaaattgtatcttatatcgtg
ggtatcctaggttttgggctagtatccacttatcagtgagtacatattgt
gtgaggtcctttgtgattgtgttacctcactcagatgatgctcttccagg
tccatccatttgtctaggagtttca
gaattcatgccttcactgacctgccagcttctacttctattccaaagcac
taggagatagaaaggaggagaattgggctccttctgaattgtccttctgc
tgtgtaaatgttgactgggaagcctccagactcattgtcattagcaatct
aaacacatttgaagagtgggatagggactgggcagcagacgcactgctca
gcatgggtcagccacactcctggtcatggcttcctggctgagaaataatc
aacctcctgaggaagggcttgatctgagtgcactaggctgatcagtgtgg
ttttcaagctcttagtgttcaccagttagggccagctctgcactgattaa
tcaccaaggagtgagccactcgttaccactttctgccccctttccaatta
ttttggtctgtatttcagcctgcatcttgggttgtgtgtagataagaatg
ccagctaattttgataacagtgaacccaacctggcttttagttgcttatc
agatattttatacttaattatccagaaaactaaaatcgaacagttcaaca
tgttaaatctggaaagtcagttttttcacagagagtactcagaaataagt
tttctttgtcctagagacgggctacaggctcagccatgctggggctcctt
aggaatgaatgccattgtcatagtgtcttcagtagtgcttgtaaaactta
ttcacttatagagtgcattttgatcatattcactcccattgtccttttac
atgtccaacactgcaggtatatccttcttcttcctaacaatgtaccctcc
cgcacgtgcgcgtgcgcgcgtgtgtatgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_29352466_29353086
seq2: B6Ng01-149G03.b_45_664

seq1  GAATTCCCCCTCTAGAAGATATTGAGTAAAAACAGTAGGTATTTTGCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCCTCTAGAAGATATTGAGTAAAAACAGTAGGTATTTTGCTCA  50

seq1  AGGAAATTTCGATCCTGTAGTTTGAAGTATTACTCCCAATGCTTCCTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATTTCGATCCTGTAGTTTGAAGTATTACTCCCAATGCTTCCTCTA  100

seq1  TTTTTATTTAAAGTGGACCATTCTTTTTTTTTTTTTTTTTTTTTTTTTTT  150
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTTTTATTTAAAGTGGACCATTC-TTTTTTTTTTTTTTTTTTTTTTTTTT  149

seq1  CCATTTTTTATTAGGTATTTAGCTCATTTACATTTCCAATGCTATACCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTTTATTAGGTATTTAGCTCATTTACATTTCCAATGCTATACCAA  199

seq1  AAGTCCCCCTTACCCACCCACCCCCACTCCCCTACCCACCCACTCCCCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCCCCTTACCCACCCACCCCCACTCCCCTACCCACCCACTCCCCCC  249

seq1  CTTTGGCCCTGGCGTTCCCCTGTACCGGGGCACACAAAGTCTGCGTGTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGCCCTGGCGTTCCCCTGTACCGGGGCACACAAAGTCTGCGTGTCC  299

seq1  AATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACAT  349

seq1  ATGCAGCTAGAGTCAAGAGCTCAGGGGTACTGGTTAGTTCATAATGTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGCTAGAGTCAAGAGCTCAGGGGTACTGGTTAGTTCATAATGTTGT  399

seq1  TCCACCTATAGGGTTGAAGATCCCTTTAGCTCCTTGGGTACTTTCTCTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTATAGGGTTGAAGATCCCTTTAGCTCCTTGGGTACTTTCTCTAG  449

seq1  CTCCTCCATTGGGAGCCCTGTGATCCATCCATTAGCTGACTGTGAGCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCATTGGGAGCCCTGTGATCCATCCATTAGCTGACTGTGAGCATC  499

seq1  CACTTCTGTGTTTGCTAGGCCCCGGCATAGTCTCACAAGAGACAGCTACA  550
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CACTTCTGTGTTTGCTAGGCCCCGGCATAGTCTCACAAGAAACAGCTACA  549

seq1  TCTGGGTCCTTTCGATAAAATCTTGCTAGTATATGCAATGGTGTCAGCGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGTCCTTTCGATAAAATCTTGCTAGTATATGCAATGGTGTCAGCGT  599

seq1  TTGGATGCTGATTATGGGGTG  621
      |||||||||||||||||||||
seq2  TTGGATGCTGATTATGGGGTG  620

seq1: chr18_29477695_29478552
seq2: B6Ng01-149G03.g_67_924 (reverse)

seq1  CACACACACACACACACACACACACACACACATACACACGCGCGCACGCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACATACACACGCGCGCACGCG  50

seq1  CACGTGCGGGAGGGTACATTGTTAGGAAGAAGAAGGATATACCTGCAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTGCGGGAGGGTACATTGTTAGGAAGAAGAAGGATATACCTGCAGTG  100

seq1  TTGGACATGTAAAAGGACAATGGGAGTGAATATGATCAAAATGCACTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACATGTAAAAGGACAATGGGAGTGAATATGATCAAAATGCACTCTA  150

seq1  TAAGTGAATAAGTTTTACAAGCACTACTGAAGACACTATGACAATGGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGAATAAGTTTTACAAGCACTACTGAAGACACTATGACAATGGCAT  200

seq1  TCATTCCTAAGGAGCCCCAGCATGGCTGAGCCTGTAGCCCGTCTCTAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCCTAAGGAGCCCCAGCATGGCTGAGCCTGTAGCCCGTCTCTAGGA  250

seq1  CAAAGAAAACTTATTTCTGAGTACTCTCTGTGAAAAAACTGACTTTCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAAACTTATTTCTGAGTACTCTCTGTGAAAAAACTGACTTTCCAG  300

seq1  ATTTAACATGTTGAACTGTTCGATTTTAGTTTTCTGGATAATTAAGTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAACATGTTGAACTGTTCGATTTTAGTTTTCTGGATAATTAAGTATA  350

seq1  AAATATCTGATAAGCAACTAAAAGCCAGGTTGGGTTCACTGTTATCAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCTGATAAGCAACTAAAAGCCAGGTTGGGTTCACTGTTATCAAAA  400

seq1  TTAGCTGGCATTCTTATCTACACACAACCCAAGATGCAGGCTGAAATACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTGGCATTCTTATCTACACACAACCCAAGATGCAGGCTGAAATACA  450

seq1  GACCAAAATAATTGGAAAGGGGGCAGAAAGTGGTAACGAGTGGCTCACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAAATAATTGGAAAGGGGGCAGAAAGTGGTAACGAGTGGCTCACTC  500

seq1  CTTGGTGATTAATCAGTGCAGAGCTGGCCCTAACTGGTGAACACTAAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTGATTAATCAGTGCAGAGCTGGCCCTAACTGGTGAACACTAAGAG  550

seq1  CTTGAAAACCACACTGATCAGCCTAGTGCACTCAGATCAAGCCCTTCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAAACCACACTGATCAGCCTAGTGCACTCAGATCAAGCCCTTCCTC  600

seq1  AGGAGGTTGATTATTTCTCAGCCAGGAAGCCATGACCAGGAGTGTGGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGTTGATTATTTCTCAGCCAGGAAGCCATGACCAGGAGTGTGGCTG  650

seq1  ACCCATGCTGAGCAGTGCGTCTGCTGCCCAGTCCCTATCCCACTCTTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATGCTGAGCAGTGCGTCTGCTGCCCAGTCCCTATCCCACTCTTCAA  700

seq1  ATGTGTTTAGATTGCTAATGACAATGAGTCTGGAGGCTTCCCAGTCAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTTAGATTGCTAATGACAATGAGTCTGGAGGCTTCCCAGTCAACA  750

seq1  TTTACACAGCAGAAGGACAATTCAGAAGGAGCCCAATTCTCCTCCTTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACACAGCAGAAGGACAATTCAGAAGGAGCCCAATTCTCCTCCTTTCT  800

seq1  ATCTCCTAGTGCTTTGGAATAGAAGTAGAAGCTGGCAGGTCAGTGAAGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCTAGTGCTTTGGAATAGAAGTAGAAGCTGGCAGGTCAGTGAAGGC  850

seq1  ATGAATTC  858
      ||||||||
seq2  ATGAATTC  858