BAC Information

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BAC

Clone NameB6Ng01-149H09
Chromosome3 (Build37)18 (Build37)
Map Location 79,442,119 - 79,442,96678,930,279 - 78,930,824
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC383883, LOC100041748, LOC100041716, LOC100041725, LOC100041766, Rapgef2, LOC100041741, LOC100041793, LOC667613, Ppid, Etfdh, 4930579G24Rik
Downstream geneRxfp1, Tmem144, 1110032E23Rik, EG626797
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149H09.bB6Ng01-149H09.g
ACCDH945793DH945794
length1,032540
definitionDH945793|Mus musculus domesticus DNA, BAC clone: B6Ng01-149H09, 5' end.DH945794|Mus musculus domesticus DNA, BAC clone: B6Ng01-149H09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(79,442,119 - 79,442,966)(78,930,279 - 78,930,824)
sequence
gaattctttgttcagttctgagccccattttttaagggggttatttgatt
ttctgaggtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccagtctgttggtggtct
ttttgtcttatagacagtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttggctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tccacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctcggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
aatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaaatgttggtctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagggacttgaagttttatcatac
agatcttttcactttcttcgttagagtcacgccgagatatttttatattt
atttgtggcctattgaagaggtgttgttccctatttctttctcagcctgt
tattcttgtgtaagaaaggccattgaactggt
aagacagggacttggggccaggaatggatgcagaagccatggaaaggtgc
tgcttactggcttgctccccctggtttgctcagcctgatttcttacatca
ctctggaccaccagaccaggggtgtcactgcctataacgagctaggctct
cccacattaatctttaagaaaatgtagtataggggtgcccacaaaccagt
ctgttgtgggcgttttctccaggttttgtcaagttgaccaaaagctagcc
agcatagtcggtaaaatacacttggtttgcacacacatgataacaagagt
ggacattcatgtttgatgggtatacctggtggaagttatcagaattatag
actatcttttgagtgagtattaatgtgctctagatttaggaggcttgtgc
cattctgcttccagttacctcttcctgtgaacaggaaacctagtcttcac
ttgatgatccttctaggagcttccaaagggtcagaggcccatcatcttta
agtggggatttgttttgatttggggttttttgttgttgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_79442119_79442966
seq2: B6Ng01-149H09.b_533_1079 (reverse)

seq1  ACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCAC  50
                                                        
seq2  --------------------------------------------------  0

seq1  TAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAAC  100
                                                        
seq2  --------------------------------------------------  0

seq1  ATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAA  150
                                                        
seq2  --------------------------------------------------  0

seq1  GGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATG  200
                                                        
seq2  --------------------------------------------------  0

seq1  ATATGATAGTATATATAAGTGACCCTAAAAATTCCAACAGAGAACTCCTA  250
                                                        
seq2  --------------------------------------------------  0

seq1  AACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATTAACTCAAA  300
                                                      | 
seq2  ------------------------------------------------AC  2

seq1  CAAGTCAATGGCCTTTCTCTACACAAAGAATAAACAGGCTGAGAAAGAAA  350
      ||  |||||||||||||| ||||| |||||| ||||||||||||||||||
seq2  CAGTTCAATGGCCTTTCT-TACAC-AAGAAT-AACAGGCTGAGAAAGAAA  49

seq1  TTAGGGAAACAACACCCTTCTCAATA-GCCACAAAT-AATAT-AAAATAT  397
       ||||| ||||||| |||  |||||| ||||||||| ||||| |||||||
seq2  -TAGGG-AACAACA-CCTCTTCAATAGGCCACAAATAAATATAAAAATAT  96

seq1  CTCGGCGTGACTCTAACGAAGGAAGTG-AAAGATCTGTATGATAAAAACT  446
      ||||||||||||||||||||| ||||| ||||||||||||||| ||||||
seq2  CTCGGCGTGACTCTAACGAAGAAAGTGAAAAGATCTGTATGAT-AAAACT  145

seq1  TCAAGTCCCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTCCCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGAT  195

seq1  CTCCCATGCTCATGGATTGGCAGGACCAACA-TTGTAAAAATGGCTATCT  545
      |||||||||||||||||||||| |||||||| ||||||||||||||||||
seq2  CTCCCATGCTCATGGATTGGCA-GACCAACATTTGTAAAAATGGCTATCT  244

seq1  TGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATTAAAATTCCAACT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATTAAAATTCCAACT  294

seq1  CAATTCTTCAACGAATTAGAAGGAGCAATTTGCAAATTCATCTGGAATAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTTCAACGAATTAGAAGGAGCAATTTGCAAATTCATCTGGAATAA  344

seq1  CAAAAAACCGAGGATAGCAAAAACTCTTCTCAAGGATAAAAGAACCTCTG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAACCGAGGATAGCAAAAACTCTTCTCAAGGATAAAAGAACCTCTG  394

seq1  GTGGAATCACCATGCCTGACCTAAAGCTTTACTACAGAGCAATTGTGATA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAATCACCATGCCTGACCTAAAGCTTTACTACAGAGCAATTGTGATA  444

seq1  AAAACTGCATGGTACTGGTATAGAGACAGACAAGTGGACCAATGGAATAG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGCATGGTACTGGTATAGAGACAGACAAGTGGACCAATGGAATAG  494

seq1  AATTGAAGACCCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAAGACCCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCG  544

seq1  ACA  848
      |||
seq2  ACA  547

seq1: chr18_78930279_78930824
seq2: B6Ng01-149H09.g_72_617

seq1  GAATTCAAGACAGGGACTTGGGGCCAGGAATGGATGCAGAAGCCATGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGACAGGGACTTGGGGCCAGGAATGGATGCAGAAGCCATGGAA  50

seq1  AGGTGCTGCTTACTGGCTTGCTCCCCCTGGTTTGCTCAGCCTGATTTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCTGCTTACTGGCTTGCTCCCCCTGGTTTGCTCAGCCTGATTTCTT  100

seq1  ACATCACTCTGGACCACCAGACCAGGGGTGTCACTGCCTATAACGAGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCACTCTGGACCACCAGACCAGGGGTGTCACTGCCTATAACGAGCTA  150

seq1  GGCTCTCCCACATTAATCTTTAAGAAAATGTAGTATAGGGGTGCCCACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTCCCACATTAATCTTTAAGAAAATGTAGTATAGGGGTGCCCACAA  200

seq1  ACCAGTCTGTTGTGGGCGTTTTCTCCAGGTTTTGTCAAGTTGACCAAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTCTGTTGTGGGCGTTTTCTCCAGGTTTTGTCAAGTTGACCAAAAG  250

seq1  CTAGCCAGCATAGTCGGTAAAATACACTTGGTTTGCACACACATGATAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCAGCATAGTCGGTAAAATACACTTGGTTTGCACACACATGATAAC  300

seq1  AAGAGTGGACATTCATGTTTGATGGGTATACCTGGTGGAAGTTATCAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTGGACATTCATGTTTGATGGGTATACCTGGTGGAAGTTATCAGAA  350

seq1  TTATAGACTATCTTTTGAGTGAGTATTAATGTGCTCTAGATTTAGGAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGACTATCTTTTGAGTGAGTATTAATGTGCTCTAGATTTAGGAGGC  400

seq1  TTGTGCCATTCTGCTTCCAGTTACCTCTTCCTGTGAACAGGAAACCTAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCCATTCTGCTTCCAGTTACCTCTTCCTGTGAACAGGAAACCTAGT  450

seq1  CTTCACTTGATGATCCTTCTAGGAGCTTCCAAAGGGTCAGAGGCCCATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACTTGATGATCCTTCTAGGAGCTTCCAAAGGGTCAGAGGCCCATCA  500

seq1  TCTTTAAGTGGGGATTTGTTTTGATTTGGGGTTTTTTGTTGTTGTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAAGTGGGGATTTGTTTTGATTTGGGGTTTTTTGTTGTTGTT  546