BAC Information

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BAC

Clone NameB6Ng01-149H20
Chromosome18 (Build37)
Map Location 61,035,007 - 61,187,951
singlet/doubletdoublet
Overlap geneLOC100042699, Arsi, Camk2a, Slc6a7, Cdx1
Upstream geneEG240327, LOC546714, EG225594, F830016B08Rik, LOC667578, EG667584, LOC435565, Iigp1, EG629292, LOC667597, 2010002N04Rik, Dctn4, Rbm22, Myoz3, Synpo, LOC100042675, Ndst1, Rps14, LOC667619, Cd74, Tcof1
Downstream genePdgfrb, Csf1r, A630042L21Rik, Slc26a2, Pde6a, EG667279, Ppargc1b, LOC667675, 4933429F08Rik, Csnk1a1, Il17b, Pcyox1l, LOC100042730, Grpel2, Afap1l1, LOC100042738, Ablim3, Sh3tc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149H20.bB6Ng01-149H20.g
ACCDH945815DH945816
length225888
definitionDH945815|Mus musculus domesticus DNA, BAC clone: B6Ng01-149H20, 5' end.DH945816|Mus musculus domesticus DNA, BAC clone: B6Ng01-149H20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,035,007 - 61,035,231)(61,187,061 - 61,187,951)
sequence
aagtctggatctgctccagatgcaccccacgacaaccatgagcttaccta
agccagctagccttgaccttcagctcagagaggtcgtggaacagacgcca
tccatttcatgttgaaggaggccaatagttttcttagactcttgtgagtt
ctctagttgctgaacgaccttagcatgtcctgccttggaacctgtctctc
ctcttcctcctcctcctcctccacc
gaattctttcttctcatatatcttttctatacaaaagatggccactctgt
gcttgtctgtcttcccaggacacaccatccagctctctttgagtagatgg
aacatgaaggcacagaatggagaagaggggtcctaccaagggtcaggggc
agtgttggcacaaatcacccacgccagaacttattctctggtgttcttcc
tctgtctccacaagacttgggaaaggcattggccaatggtcctccggggg
tggcaggaagcaggtcctccaaatacctttgaccccacccccacgcccat
ctttcttcccttctctttgttccttggctctgcagctgtccccatcacat
gacccagtgacccttctggatctgttctctcatctccatcttgaagtggg
atccaacggcttcctttcccacctccctaagcatcccccaagcaggcacc
acagacataggtgggcaagccattgcccccctgctctactaggcgggagg
atatatgggtgtgccctccctatgagtgtccctggatagtggtgagtagt
gaggcagactcagaatggcatggaacttgagcatagagggcctgtggtct
ggggctgcagttcaacggaagagtgcgtacctagcatacatgaagttctg
ggttccatatcttggtgctgacacccatccctcatcaggagagaatgaga
cccacaggtgagggacttgtttaagaacacttcagttggagcttgctaaa
gatgagggggcagaggtgtagctgagaggcagagctgagcttgacccttg
gtatcattatcaccgctcccccgcccccaaatggtagaacctagcatagg
tatttttaacaaactccatacacacatgtgttgggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_61035007_61035231
seq2: B6Ng01-149H20.b_51_275

seq1  AAGTCTGGATCTGCTCCAGATGCACCCCACGACAACCATGAGCTTACCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTGGATCTGCTCCAGATGCACCCCACGACAACCATGAGCTTACCTA  50

seq1  AGCCAGCTAGCCTTGACCTTCAGCTCAGAGAGGTCGTGGAACAGACGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGCTAGCCTTGACCTTCAGCTCAGAGAGGTCGTGGAACAGACGCCA  100

seq1  TCCATTTCATGTTGAAGGAGGCCAATAGTTTTCTTAGACTCTTGTGAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTCATGTTGAAGGAGGCCAATAGTTTTCTTAGACTCTTGTGAGTT  150

seq1  CTCTAGTTGCTGAACGACCTTAGCATGTCCTGCCTTGGAACCTGTCTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGTTGCTGAACGACCTTAGCATGTCCTGCCTTGGAACCTGTCTCTC  200

seq1  CTCTTCCTCCTCCTCCTCCTCCTCC  225
      |||||||||||||||||||||| ||
seq2  CTCTTCCTCCTCCTCCTCCTCCACC  225

seq1: chr18_61187061_61187951
seq2: B6Ng01-149H20.g_68_955 (reverse)

seq1  CCCCCCAACACATGTGTGTATGGGAGTTTGTTAAAAATACCTATTGCTAG  50
      ||||||||||||||||||||| ||||||||||||||||||||| ||||||
seq2  CCCCCCAACACATGTGTGTAT-GGAGTTTGTTAAAAATACCTA-TGCTAG  48

seq1  GTTCTACCATTTGGGGGCGGGGGGAGCGGTGATAATGTTACCAAGGGTCA  100
      |||||||||||||||||| |||||||||||||||||| ||||||||||||
seq2  GTTCTACCATTTGGGGGC-GGGGGAGCGGTGATAATGATACCAAGGGTCA  97

seq1  AGCTCAGCTCTGCCTCTCAGCTACACCTCTGCCCCCTCATCTTTAGCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGCTCTGCCTCTCAGCTACACCTCTGCCCCCTCATCTTTAGCAAG  147

seq1  CTCCAACTGAAGTGTTCTTAAACAAGTCCCTCACCTGTGGGTCTCATTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAACTGAAGTGTTCTTAAACAAGTCCCTCACCTGTGGGTCTCATTCT  197

seq1  CTCCTGATGAGGGATGGGTGTCAGCACCAAGATATGGAACCCAGAACTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGATGAGGGATGGGTGTCAGCACCAAGATATGGAACCCAGAACTTC  247

seq1  ATGTATGCTAGGTACGCACTCTTCCGTTGAACTGCAGCCCCAGACCACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGCTAGGTACGCACTCTTCCGTTGAACTGCAGCCCCAGACCACAG  297

seq1  GCCCTCTATGCTCAAGTTCCATGCCATTCTGAGTCTGCCTCACTACTCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCTATGCTCAAGTTCCATGCCATTCTGAGTCTGCCTCACTACTCAC  347

seq1  CACTATCCAGGGACACTCATAGGGAGGGCACACCCATATATCCTCCCGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATCCAGGGACACTCATAGGGAGGGCACACCCATATATCCTCCCGCC  397

seq1  TAGTAGAGCAGGGGGGCAATGGCTTGCCCACCTATGTCTGTGGTGCCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGAGCAGGGGGGCAATGGCTTGCCCACCTATGTCTGTGGTGCCTGC  447

seq1  TTGGGGGATGCTTAGGGAGGTGGGAAAGGAAGCCGTTGGATCCCACTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGGATGCTTAGGGAGGTGGGAAAGGAAGCCGTTGGATCCCACTTCA  497

seq1  AGATGGAGATGAGAGAACAGATCCAGAAGGGTCACTGGGTCATGTGATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGAGATGAGAGAACAGATCCAGAAGGGTCACTGGGTCATGTGATGG  547

seq1  GGACAGCTGCAGAGCCAAGGAACAAAGAGAAGGGAAGAAAGATGGGCGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGCTGCAGAGCCAAGGAACAAAGAGAAGGGAAGAAAGATGGGCGTG  597

seq1  GGGGTGGGGTCAAAGGTATTTGGAGGACCTGCTTCCTGCCACCCCCGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGGGGTCAAAGGTATTTGGAGGACCTGCTTCCTGCCACCCCCGGAG  647

seq1  GACCATTGGCCAATGCCTTTCCCAAGTCTTGTGGAGACAGAGGAAGAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATTGGCCAATGCCTTTCCCAAGTCTTGTGGAGACAGAGGAAGAACA  697

seq1  CCAGAGAATAAGTTCTGGCGTGGGTGATTTGTGCCAACACTGCCCCTGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGAATAAGTTCTGGCGTGGGTGATTTGTGCCAACACTGCCCCTGAC  747

seq1  CCTTGGTAGGACCCCTCTTCTCCATTCTGTGCCTTCATGTTCCATCTACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGTAGGACCCCTCTTCTCCATTCTGTGCCTTCATGTTCCATCTACT  797

seq1  CAAAGAGAGCTGGATGGTGTGTCCTGGGAAGACAGACAAGCACAGAGTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGAGCTGGATGGTGTGTCCTGGGAAGACAGACAAGCACAGAGTGG  847

seq1  CCATCTTTTGTATAGAAAAGATATATGAGAAGAAAGAATTC  891
      |||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTTTGTATAGAAAAGATATATGAGAAGAAAGAATTC  888