BAC Information

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BAC

Clone NameB6Ng01-150B08
Chromosome12 (Build37)18 (Build37)
Map Location 13,354,076 - 13,354,59190,264,522 - 90,265,672
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneD12Ertd553e, LOC100043215, Mycn, EG668473, LOC628449, Ddx1
Downstream geneLOC627199, LOC627189, LOC100043243, LOC100042396, LOC238091, EG633789, LOC668481, AW125753
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150B08.bB6Ng01-150B08.g
ACCDH946253DH946254
length9961,157
definitionDH946253|Mus musculus domesticus DNA, BAC clone: B6Ng01-150B08, 5' end.DH946254|Mus musculus domesticus DNA, BAC clone: B6Ng01-150B08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(13,354,076 - 13,354,591)(90,264,522 - 90,265,672)
sequence
gaattctcaactgaggaataccgaatgactgagaagcgccctgaataaat
gttcaacatccttaatcatcagggaaatgcaaattaaaacaaccctgaga
ttccacctcacaccagtcaaaatggcttggatcaaaaattcaggtgacag
cagatgctggcgaggatgtggagaaagaggaacactcctccattgctgat
gagattgcaagctgatacaaacaatctggaaatcagtcttgaggttcctc
agaaaactggacatagtactaccggatgatccagcaatacctctcctggg
catatatacccagaagatgtcccaactggtaataaggacacatgctccac
tatgttcatagcagccttatttataatagccagaagctggaaagaaccca
gatgtccctcaacagaagaatgaatacagaaaatgtggtccatttacaca
acggagtactactcagctgttaaaaacaatgaatttataaaatgtttgag
caaatggatatatctgtaggatatccctcagagtgaggtaactcaatcac
aaaagaagtcacttgatacgcactcactgataagtggatattagcccatg
tattagtcagggttctctagagtcacagaacttacagatagtctctagat
agtaaaggaatttattgatgacttacagtcggcagcccaattcccaacaa
ttgttcagttgcagctgtgaatggaagtccaaggatctagcagttactca
gtctcacttagcaagcaggcgaaggagcaggagcaagagctcgagctaga
ctcccttcttccaatgtccttatattgtctccagcaaaaggtgtagccca
gattaaaggtgtgttccaccacacctttaatcccagatgaaaggtatagc
ccagattaaaggtgtgttccttaactcggagattcaatcttctggaatcc
atagccactatggctcaagatcttcaaaccaagatccagatacgat
gaattccctgaatcttttctcagtgacctgtaagatagtaatcgatttga
tatttagcttttatgtctaatgaataaaatttattctatttgacacaatg
atatttaggtattgtttcatatgctaaatattttctatatgtattggtag
tctatagttcagcagagctattcttaaccgttctacctttaaaagcacat
ttcttaattcgtcattagaatgaaagttgatattaagtactttttagtag
tttcaggtcatgatgtccaggaaaatatgatcatatcaaagctgttcttg
tctgcctgtcagtgtgatacttgatagagctttgattagatttgatggac
tatcttactctgctcatgaactgaactgagcctgagagatttatgctatt
taatagtgctctcaaactctctcagtaagtatatctactccacagcacag
gaagaaagtgtcttttcaaaatatctcaaaacaaaacaatggtctgaagt
attggggctaagtaaaactgtagagcaaatatgtatttactgaaatcagg
gcattgtctgtggttttcttactaagcttaagatcataattacttatcac
aaacttaggggaagggcatatgttctgatgttcagaaacagaagccagta
ttaagacaatcatatactaaggttatgagctatataaaaatatacaacaa
attatatttatatatccttacattgttatctctagattgaattattttta
ttccagtaacatcatttgcctattttatttagactatctgtttgatttac
acaaagcctttttgttataatttcttcctgaatccaggatacagattttc
tttttttaatccttgcttataaattttatgtattattaatgtatgtgtat
gtgagagacagatgtgattgtgtgtgtgcatatgctatggtggtggaagt
agagacactttgtagattcatttcttttctccccttttatattacaggag
gttccaagcattaaatggctcgtcttcgaggcctacagatgagccattct
ttaccaagctgagtcatcttgctggccacttgaattctttttggttttaa
tgctcacattcttgtatttcttactatttactgaagggagtggcttacca
ctactga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_13354076_13354591
seq2: B6Ng01-150B08.b_284_645 (reverse)

seq1  GCTAATATCCACTTATCAGTGAGTACATATTGTGTGAGTTCTTTTGTGAT  50
      |||||||||||||||||||||||| | |||   |||| ||||||||||||
seq2  GCTAATATCCACTTATCAGTGAGTGCGTATCAAGTGACTTCTTTTGTGAT  50

seq1  TGGGTTACCTCACTCAGGATGATGCCCTCCAGGTCCATCCATTTGCCTAG  100
      || |||||||||||| |   |||  ||| ||| |  ||||||||||  | 
seq2  TGAGTTACCTCACTCTGAGGGATATCCTACAGATATATCCATTTGCTCAA  100

seq1  GAATTTCATAAATCCATTCTTTTTAATAGCTGAGTAGCCGGGCGTGGTGG  150
        |||| |||||| |||| |||||                          
seq2  ACATTTTATAAATTCATTGTTTTT--------------------------  124

seq1  CGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTG  200
                                                        
seq2  --------------------------------------------------  124

seq1  AGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGAGCT  250
                                                        
seq2  --------------------------------------------------  124

seq1  ACACAGAGAAACCCTGTCTCAAAAAAAAAAAAAAGCTGAGTAGTACTCCA  300
                                    || |||||||||||||||| 
seq2  ------------------------------AACAGCTGAGTAGTACTCCG  144

seq1  TTGTGTAAATGTACCACATTTTCTGTATCCATTCCTCTGTTGAGGGGCAT  350
      ||||||||||| |||||||||||||||| ||||| ||||||||||| |||
seq2  TTGTGTAAATGGACCACATTTTCTGTATTCATTCTTCTGTTGAGGGACAT  194

seq1  CTGAGTTCTTTCCAGCTTCTGGCTATTATAAATAAGGCTGCTATGAACAT  400
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTTCTTTCCAGCTTCTGGCTATTATAAATAAGGCTGCTATGAACAT  244

seq1  AGTGGAGCATGTGTCCTTCTTACCAGTTGGAACATCTTCTGG--ATATAT  448
      |||||||||||||||||| ||||||||||| |||||||||||  ||||||
seq2  AGTGGAGCATGTGTCCTTATTACCAGTTGGGACATCTTCTGGGTATATAT  294

seq1  GCCCAGGAGAGGTATTGCTGGATCCTCCGGTAGTACTATGTCCAATTTTC  498
      |||||||||||||||||||||||| ||||||||||||||||||| |||||
seq2  GCCCAGGAGAGGTATTGCTGGATCATCCGGTAGTACTATGTCCAGTTTTC  344

seq1  TGAGGAACCGCCAGACTG  516
      ||||||||| | ||||||
seq2  TGAGGAACCTCAAGACTG  362

seq1: chr18_90264522_90265672
seq2: B6Ng01-150B08.g_69_1225 (reverse)

seq1  TCAGTA--TGTAAG-CACT-CCTACAGTAAAT-GAAAAAAAATCAAGAAA  45
      ||||||   ||||| |||| ||| |||||||| | || |||  |||||| 
seq2  TCAGTAGTGGTAAGCCACTCCCTTCAGTAAATAGTAAGAAATACAAGAA-  49

seq1  TGGTGA-CATTAAAACCAAAAAAGAATACCAGTGGCCAGCAAGATGACTC  94
        |||| |||||||||| ||||||||| | ||||||||||||||||||||
seq2  -TGTGAGCATTAAAACC-AAAAAGAATTCAAGTGGCCAGCAAGATGACTC  97

seq1  AGC-TGGTAAAGA--TGCTCATCTTGTAAGCCT-GAAGACGAG-CATTTA  139
      ||| |||||||||   ||||||| |||| |||| ||||||||| ||||||
seq2  AGCTTGGTAAAGAATGGCTCATC-TGTAGGCCTCGAAGACGAGCCATTTA  146

seq1  ATGCTTGGAACCT-CTGTAAATATAAAAGGGGAGAAAAGAAATGAATCTA  188
      ||||||||||||| |||| |||||||||||||||||||||||||||||||
seq2  ATGCTTGGAACCTCCTGT-AATATAAAAGGGGAGAAAAGAAATGAATCTA  195

seq1  CAAAGTTGTTCTCTAACTTCCA-CACCATAGCATATGCACACACAC-ATC  236
      ||||||   ||||| ||||||| ||||||||||||||||||||||| |||
seq2  CAAAGT--GTCTCT-ACTTCCACCACCATAGCATATGCACACACACAATC  242

seq1  ACATCTGTCTCTCACATACACATACATTAATAATACATAAAATTTATAAG  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGTCTCTCACATACACATACATTAATAATACATAAAATTTATAAG  292

seq1  CAAGGATTAAAAAAAGAAAATCTGTATCCTGGATTCAGGAAGAAATTATA  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGATTAAAAAAAGAAAATCTGTATCCTGGATTCAGGAAGAAATTATA  342

seq1  ACAAAAAGGCTTTGTGTAAATCAAACAGATAGTCTAAATAAAATAGGCAA  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAGGCTTTGTGTAAATCAAACAGATAGTCTAAATAAAATAGGCAA  392

seq1  ATGATGTTACTGGAATAAAAATAATTCAATCTAGAGATAACAATGTAAGG  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGTTACTGGAATAAAAATAATTCAATCTAGAGATAACAATGTAAGG  442

seq1  ATATATAAATATAATTTGTTGTATATTTTTATATAGCTCATAACCTTAGT  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAAATATAATTTGTTGTATATTTTTATATAGCTCATAACCTTAGT  492

seq1  ATATGATTGTCTTAATACTGGCTTCTGTTTCTGAACATCAGAACATATGC  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGATTGTCTTAATACTGGCTTCTGTTTCTGAACATCAGAACATATGC  542

seq1  CCTTCCCCTAAGTTTGTGATAAGTAATTATGATCTTAAGCTTAGTAAGAA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCCTAAGTTTGTGATAAGTAATTATGATCTTAAGCTTAGTAAGAA  592

seq1  AACCACAGACAATGCCCTGATTTCAGTAAATACATATTTGCTCTACAGTT  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACAGACAATGCCCTGATTTCAGTAAATACATATTTGCTCTACAGTT  642

seq1  TTACTTAGCCCCAATACTTCAGACCATTGTTTTGTTTTGAGATATTTTGA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTAGCCCCAATACTTCAGACCATTGTTTTGTTTTGAGATATTTTGA  692

seq1  AAAGACACTTTCTTCCTGTGCTGTGGAGTAGATATACTTACTGAGAGAGT  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACACTTTCTTCCTGTGCTGTGGAGTAGATATACTTACTGAGAGAGT  742

seq1  TTGAGAGCACTATTAAATAGCATAAATCTCTCAGGCTCAGTTCAGTTCAT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAGCACTATTAAATAGCATAAATCTCTCAGGCTCAGTTCAGTTCAT  792

seq1  GAGCAGAGTAAGATAGTCCATCAAATCTAATCAAAGCTCTATCAAGTATC  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGAGTAAGATAGTCCATCAAATCTAATCAAAGCTCTATCAAGTATC  842

seq1  ACACTGACAGGCAGACAAGAACAGCTTTGATATGATCATATTTTCCTGGA  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGACAGGCAGACAAGAACAGCTTTGATATGATCATATTTTCCTGGA  892

seq1  CATCATGACCTGAAACTACTAAAAAGTACTTAATATCAACTTTCATTCTA  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATGACCTGAAACTACTAAAAAGTACTTAATATCAACTTTCATTCTA  942

seq1  ATGACGAATTAAGAAATGTGCTTTTAAAGGTAGAACGGTTAAGAATAGCT  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACGAATTAAGAAATGTGCTTTTAAAGGTAGAACGGTTAAGAATAGCT  992

seq1  CTGCTGAACTATAGACTACCAATACATATAGAAAATATTTAGCATATGAA  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGAACTATAGACTACCAATACATATAGAAAATATTTAGCATATGAA  1042

seq1  ACAATACCTAAATATCATTGTGTCAAATAGAATAAATTTTATTCATTAGA  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATACCTAAATATCATTGTGTCAAATAGAATAAATTTTATTCATTAGA  1092

seq1  CATAAAAGCTAAATATCAAATCGATTACTATCTTACAGGTCACTGAGAAA  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAAGCTAAATATCAAATCGATTACTATCTTACAGGTCACTGAGAAA  1142

seq1  AGATTCAGGGAATTC  1151
      |||||||||||||||
seq2  AGATTCAGGGAATTC  1157