BAC Information

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BAC

Clone NameB6Ng01-150E12
Chromosome18 (Build37)
Map Location 74,015,560 - 74,216,549
singlet/doubletdoublet
Overlap geneMro, Mapk4
Upstream geneLOC100043411, LOC100042955, Rkhd2, Smad4, Elac1, Me2
Downstream gene2810433K01Rik, Cxxc1, EG435570, Mbd1, Ccdc11, LOC628298, LOC668124, LOC668126, Myo5b, Acaa2, LOC672799, Lipg, Rpl17, BC031181, Dym
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150E12.bB6Ng01-150E12.g
ACCDH946399DH946400
length1,1171,055
definitionDH946399|Mus musculus domesticus DNA, BAC clone: B6Ng01-150E12, 5' end.DH946400|Mus musculus domesticus DNA, BAC clone: B6Ng01-150E12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,015,560 - 74,016,675)(74,215,420 - 74,216,549)
sequence
gaattcacaagagatcaatgtgtctcctggtgtgcttctcttaccgtaag
tgtgtgactgcaagacatgtgtcaaccgagtttccagaagcctgtactga
ggggcaaacagaaggaggtctgtctcccttttgctcagaactgtgccatc
ttttttttctttttattctgttggggcatgcatggaacaatttaaaaaaa
tatccttttatgtttaaagacataagggaaaaagatctgatctttttttt
tttttctttttctttttctttctccttccaggcctgctccctccagccca
gagatttatttatttattttatgtaagtacactgtagctgtcttaagatg
caccagaagagggcgtcagatctcattatgaatggttgtgagccaccatg
tggttatgggatttgaactcaggacttccggaggtgcagtcagtgcttgt
aaccgctgagccatctcctccgcccctaatcatcgtttctactcctttta
acagcacaatgcaaatagcacatgaaagtgtccatctgaacagttttctt
cctcacccggtgactctccggagaggctcctgttaatgctttcgttagta
tcttttcaggaggaaaaggacatgtcagcttctctttttttctttctttt
ttcttttaaagaaaatacttctttttatttatgtacacgtctatgtgtct
gtttatgtcatctgtgtgcagatgctgaactgtgccagaagagggcatta
aggcccctgcagctggtgttacagacagtcgtgagccacccaatatggaa
gagtgggtagcactctttacacctgaaccgtctcgccaacctcagctcat
tttgcttttaaaaaaaatgcacataaatttgaattgcaatatagtcagtc
tcctgcgaaccttgacgctttttcacataatgtagcttcactgtttcttg
ggtcggtacccagccctcttgacacattcttttggtaacgcactctagga
ttattactgtgtaaaagcatcctacagcttggctgtaatatcgttgacag
ctgcttagccctgtgcttcagccatgggtcaccctcagtggcaagtgaac
tcgaacgtggaaggggg
gaattctagttatttttcaacattatagcttcaacaagaagccatatcgc
cttcaacattgacattgtttccactacccctggaagtttagtcgttgttt
ttgagacaaagttgctataagcccaggctgacctccgagttagccctggt
cttccccatctcctctcaagtaccaggatacaggtattcatcacatacct
ggctcattggctaagcccagcttttatagctgtgtgctgggcccggatat
tttgccttctatgtctgggattttccctttgtaatacctaagcacctgtt
tttcctatttgttgtgtgttctgattttcgtttcggttcatgtttacgtt
attatgtttccttgttttgttggttagtctttgtgtgctgaatatttctt
taaaaaattatttgtgtgacttaaccatgtgtcaccagcatgtgatctca
gcacttggaaggctaaagcaggacaagcatgaggtcagactgggctacag
taagaccctgactttaaaaaaatgaatgtatatataaataccacatttta
tatcttaaaatataaatatttctacatttcaatctctgaaatcaagatat
ttttaaaactaatagattcttacatttatgtttggcagcattttttattt
ttctctgataaattaaataatgctaatgtatcatgtaattagtgatattt
aacatttgatgacataatttgaagctttggctgttactgctaaatatgac
aagtgttctaaaaaggattttaaatggcttgcatagagttgcaggaaaac
tgtctcttaggaagcttgagactctctaggtacccagatgacatgaagcc
agactagattattttttgttttttcttatttccatttccttgctcttgga
cttctatgttgatgtaaagcagaggccctggccttttgatcccattgggc
tggtgtagtggtttactctcctggctgatgggaagagagtactattagag
gtgtggcctgttggataaggaatagggaataggaataggaataggaatcg
gaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_74015560_74016675
seq2: B6Ng01-150E12.b_43_1159

seq1  GAATTCACAAGAGATCAATGTGTCTCCTGGTGTGCTTCTCTTACCGTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAAGAGATCAATGTGTCTCCTGGTGTGCTTCTCTTACCGTAAG  50

seq1  TGTGTGACTGCAAGACATGTGTCAACCGAGTTTCCAGAAGCCTGTACTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGACTGCAAGACATGTGTCAACCGAGTTTCCAGAAGCCTGTACTGA  100

seq1  GGGGCAAACAGAAGGAGGTCTGTCTCCCTTTTGCTCAGAACTGTGCCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAAACAGAAGGAGGTCTGTCTCCCTTTTGCTCAGAACTGTGCCATC  150

seq1  TTTTTTTTCTTTTTATTCTGTTGGGGCATGCATGGAACAATTTAAAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCTTTTTATTCTGTTGGGGCATGCATGGAACAATTTAAAAAAA  200

seq1  TATCCTTTTATGTTTAAAGACATAAGGGAAAAAGATCTGATCTTTTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTTTTATGTTTAAAGACATAAGGGAAAAAGATCTGATCTTTTTTTT  250

seq1  TTTTTCTTTTTCTTTTTCTTTCTCCTTCCAGGCCTGCTCCCTCCAGCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTTTTCTTTTTCTTTCTCCTTCCAGGCCTGCTCCCTCCAGCCCA  300

seq1  GAGATTTATTTATTTATTTTATGTAAGTACACTGTAGCTGTCTTAAGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTTATTTATTTATTTTATGTAAGTACACTGTAGCTGTCTTAAGATG  350

seq1  CACCAGAAGAGGGCGTCAGATCTCATTATGAATGGTTGTGAGCCACCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGAAGAGGGCGTCAGATCTCATTATGAATGGTTGTGAGCCACCATG  400

seq1  TGGTTATGGGATTTGAACTCAGGACTTCCGGAGGTGCAGTCAGTGCTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTATGGGATTTGAACTCAGGACTTCCGGAGGTGCAGTCAGTGCTTGT  450

seq1  AACCGCTGAGCCATCTCCTCCGCCCCTAATCATCGTTTCTACTCCTTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGCTGAGCCATCTCCTCCGCCCCTAATCATCGTTTCTACTCCTTTTA  500

seq1  ACAGCACAATGCAAATAGCACATGAAAGTGTCCATCTGAACAGTTTTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCACAATGCAAATAGCACATGAAAGTGTCCATCTGAACAGTTTTCTT  550

seq1  CCTCACCCGGTGACTCTCCGGAGAGGCTCCTGTTAATGCTTTCGTTAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACCCGGTGACTCTCCGGAGAGGCTCCTGTTAATGCTTTCGTTAGTA  600

seq1  TCTTTTCAGGAGGAAAAGGACATGTCAGCTTCTCTTTTTTTCTTTCTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCAGGAGGAAAAGGACATGTCAGCTTCTCTTTTTTTCTTTCTTTT  650

seq1  TTCTTTTAAAGAAAATACTTCTTTTTATTTATGTACACGTCTATGTGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTAAAGAAAATACTTCTTTTTATTTATGTACACGTCTATGTGTCT  700

seq1  GTTTATGTCATCTGTGTGCAGATGCTGAACTGTGCCAGAAGAGGGCATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATGTCATCTGTGTGCAGATGCTGAACTGTGCCAGAAGAGGGCATTA  750

seq1  AGGCCCCTGCAGCTGGTGTTACAGACAGTCGTGAGCCACCCAATATGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCCTGCAGCTGGTGTTACAGACAGTCGTGAGCCACCCAATATGGAA  800

seq1  GAGTGGGTAGCACTCTTTACACCTGAACCGTCTCGCCAACCTCAGCTCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGGTAGCACTCTTTACACCTGAACCGTCTCGCCAACCTCAGCTCAT  850

seq1  TTTGCTTTTAAAAAAAATGCACATAAA-TTGAATTGCAATATAGTCAGTC  899
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTTGCTTTTAAAAAAAATGCACATAAATTTGAATTGCAATATAGTCAGTC  900

seq1  TCCTGCGAACCTTGACGC-TTTTCACATAATGTAGCTTCACTGTTTCCTT  948
      |||||||||||||||||| |||||||||||||||||||||||||||| | 
seq2  TCCTGCGAACCTTGACGCTTTTTCACATAATGTAGCTTCACTGTTTCTTG  950

seq1  GGTCGGTACCCAGCCCTC-TGACACATTCTTTTGGTAACGCACTCTAGGA  997
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GGTCGGTACCCAGCCCTCTTGACACATTCTTTTGGTAACGCACTCTAGGA  1000

seq1  TTA-TACTGTGTAAAAGCATCCTACAGCTGGGCTGTAATATCGTTGACAG  1046
      ||| ||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTATTACTGTGTAAAAGCATCCTACAGCTTGGCTGTAATATCGTTGACAG  1050

seq1  CTTGCTTAGCCCCTGTGCTTCAGCCATGGGTTCAACCCTCAGTGCCAAGT  1096
      | ||||||| |||||||||||||||||||||   |||||||||| |||||
seq2  C-TGCTTAG-CCCTGTGCTTCAGCCATGGGT--CACCCTCAGTGGCAAGT  1096

seq1  GAAC-CAGACGTGGAGGGGGG  1116
      |||| |  ||||||| |||||
seq2  GAACTCGAACGTGGAAGGGGG  1117

seq1: chr18_74215420_74216549
seq2: B6Ng01-150E12.g_66_1120 (reverse)

seq1  TATTCCTATTCCTATTCCTATTCCTATTCCTATTCCTATTCCTATTCCTA  50
                                                        
seq2  --------------------------------------------------  0

seq1  TTCCTATTCCTATTCCTATTCCTATTCCTATTCCTATTCCTATTCCTATT  100
                      |||||| ||||||||||||||||||||||     
seq2  ----------------TATTCCGATTCCTATTCCTATTCCTATTC-----  29

seq1  CCTATTCCTATTCCAACAAGGCCACACCTCCTAATAGTACTCTCTTCCCA  150
      |||||||||  |||||| ||||||||||| ||||||||||||||||||||
seq2  CCTATTCCTTATCCAAC-AGGCCACACCT-CTAATAGTACTCTCTTCCCA  77

seq1  TCAGCCAAGGAGAGTTAAACCACTACA-CAGCCCAATGGGATCAAAAGGC  199
      |||||| ||||||| |||||||||||| ||||||||||||||||||||||
seq2  TCAGCC-AGGAGAG-TAAACCACTACACCAGCCCAATGGGATCAAAAGGC  125

seq1  CAGGGCCTCTGCTTTACATCAAACATAGAAGTCCAAGAGCAAGGAAATGG  249
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CAGGGCCTCTGCTTTACATC-AACATAGAAGTCCAAGAGCAAGGAAATGG  174

seq1  AAATAAGGAAAAACAAAAAATAATCTAGTCTGGCTTCATGTCATCTGGGT  299
      ||||||| ||||||||||||||||||||||||||||||||||||||||| 
seq2  AAATAAGAAAAAACAAAAAATAATCTAGTCTGGCTTCATGTCATCTGGG-  223

seq1  TACCTAGAGAGTCTCAAGCTTCCTAAGAGACAGTTTTCCTGCAACTCTAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTAGAGAGTCTCAAGCTTCCTAAGAGACAGTTTTCCTGCAACTCTAT  273

seq1  GCAAGCCATTTAAAATCCTTTTTAGAACACTTGTCATATTTAGCAGTAAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCCATTTAAAATCCTTTTTAGAACACTTGTCATATTTAGCAGTAAC  323

seq1  AGCCAAAGCTTCAAATTATGTCATCAAATGTTAAATATCACTAATTACAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAAGCTTCAAATTATGTCATCAAATGTTAAATATCACTAATTACAT  373

seq1  GATACATTAGCATTATTTAATTTATCAGAGAAAAAT-AAAAATGCTGCCA  498
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GATACATTAGCATTATTTAATTTATCAGAGAAAAATAAAAAATGCTGCCA  423

seq1  AACATAAATGTAAGAATCTATTAGTTTTAAAAATATCTTGATTTCAGAGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAAATGTAAGAATCTATTAGTTTTAAAAATATCTTGATTTCAGAGA  473

seq1  TTGAAATGTAGAAATATTTATATTTTAAGATATAAAATGTGGTATTTATA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATGTAGAAATATTTATATTTTAAGATATAAAATGTGGTATTTATA  523

seq1  TATACATTCATTTTTTTAAAGTCAGGGTCTTACTGTAGCCCAGTCTGACC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATTCATTTTTTTAAAGTCAGGGTCTTACTGTAGCCCAGTCTGACC  573

seq1  TCATGCTTGTCCTGCTTTAGCCTTCCAAGTGCTGAGATCACATGCTGGTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCTTGTCCTGCTTTAGCCTTCCAAGTGCTGAGATCACATGCTGGTG  623

seq1  ACACATGGTTAAGTCACACAAATAATTTTTTAAAGAAATATTCAGCACAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGGTTAAGTCACACAAATAATTTTTTAAAGAAATATTCAGCACAC  673

seq1  AAAGACTAACCAACAAAACAAGGAAACATAATAACGTAAACATGAACCGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTAACCAACAAAACAAGGAAACATAATAACGTAAACATGAACCGA  723

seq1  AACGAAAATCAGAACACACAACAAATAGGAAAAACAGGTGCTTAGGTATT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGAAAATCAGAACACACAACAAATAGGAAAAACAGGTGCTTAGGTATT  773

seq1  ACAAAGGGAAAATCCCAGACATAGAAGGCAAAATATCCGGGCCCAGCACA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGGAAAATCCCAGACATAGAAGGCAAAATATCCGGGCCCAGCACA  823

seq1  CAGCTATAAAAGCTGGGCTTAGCCAATGAGCCAGGTATGTGATGAATACC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTATAAAAGCTGGGCTTAGCCAATGAGCCAGGTATGTGATGAATACC  873

seq1  TGTATCCTGGTACTTGAGAGGAGATGGGGAAGACCAGGGCTAACTCGGAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCCTGGTACTTGAGAGGAGATGGGGAAGACCAGGGCTAACTCGGAG  923

seq1  GTCAGCCTGGGCTTATAGCAACTTTGTCTCAAAAACAACGACTAAACTTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCCTGGGCTTATAGCAACTTTGTCTCAAAAACAACGACTAAACTTC  973

seq1  CAGGGGTAGTGGAAACAATGTCAATGTTGAAGGCGATATGGCTTCTTGTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGTAGTGGAAACAATGTCAATGTTGAAGGCGATATGGCTTCTTGTT  1023

seq1  GAAGCTATAATGTTGAAAAATAACTAGAATTC  1130
      ||||||||||||||||||||||||||||||||
seq2  GAAGCTATAATGTTGAAAAATAACTAGAATTC  1055