BAC Information

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BAC

Clone NameB6Ng01-150J20
Chromosome18 (Build37)
Map Location 33,977,593 - 34,176,988
singlet/doubletdoublet
Overlap geneEpb4.1l4a
Upstream geneTslp, Wdr36, Camk4, Stard4, EG433170, D0H4S114, ENSMUSG00000073610, LOC666281, LOC100041258
Downstream geneEG666296, Ppia-ps18_318.1, Ppia-ps18_319.1, LOC666313, Apc, Srp19, Reep5, Pkd2l2, 2610024E20Rik, Wnt8a, Nme5, 4933408B17Rik, Brd8, Kif20a, Cdc23, Gfra3, Cdc25c, LOC100041859, 2810012G03Rik, LOC100041879, LOC100041887, Jmjd1b, Reep2, Egr1, Etf1, Hspa9, LOC100041377, EG626954
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150J20.bB6Ng01-150J20.g
ACCDH946649DH946650
length1,059545
definitionDH946649|Mus musculus domesticus DNA, BAC clone: B6Ng01-150J20, 5' end.DH946650|Mus musculus domesticus DNA, BAC clone: B6Ng01-150J20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,175,929 - 34,176,988)(33,977,593 - 33,978,143)
sequence
gaattcacagcacttgtgacagtacgtacaaaactgttcaagctcaggac
aaaccaaatgccagtgtggagttgggagtgggtacaaagcccctcatata
tctgagggtctgtggtaactgataggtgctggcaggggagagctaagtct
tcaagtttcaggaccctgataggtgtaacatgctctagtggatgcttaca
tgcccaagagcctgtaggcactactgacaggactctgatctaaaagtaga
atgagaacacaaggtcggttgcttatagaatgggggatgggtctgggagg
agacgggacatgaaaatgcaatgtgtgaaaggctcaaataatgaatgaaa
aaatgttttaaaaactgtgattttctatgctatgccacatgctgtcttag
gagctaccgtgaacaagcggagtaggggctgcctctgccctcaggaggct
cacagaaagcgaaaagacacacacagaatatactcaggaactcacaagtt
tacagttaggaaacggtctacttaaataaaaaaaaagtcacgtggtgttt
tctaggaccctgatcccacattatgacagtgttctagttaaagtaagatt
cacacttgctaagaactatcactctacggaactgtgggtggtatgagggc
aaaaagcagtctgccattgctatgcctgcctgtcacgcagagaatggcca
atgagtcttgtctgagtagttagagaaaaagagcaaagaaaatgtgagca
gagaaaagcctaagtagcagtttaagatgtatgattcacataatgtagag
ccttgatatacagatgtacatattttgagaaagatataaaacatagggtg
gttattttccatgaacatgtggtatttattttggactatgatttatcaaa
tgaccttgtgaattaaaaccccggtttgtgcacttgacatttgttggtta
tctctgcctgattctcaagcttagtctcctagtcattcttctgggttcat
atgtgagttccatgtggacccagaccacgctaatattcttatagctcaga
agcatggtt
aagcagtttcacagaggccccagaagcagaaactgatagggaagaaaaaa
agcaaaaaacaaaacaaaacaaaaacaaacaaacaaacaaacaaaacacc
ctttattttgaatctctatctgctttatctagccattctacagcacacag
atatgcacaggtaggtggacagaaatcagtgttcttactgtgatgtgtaa
cgtgtgacctgagagctcacgtcaggaataaagactggaatggaagaacc
cgtgtgtctcaacaggccactgaggaaatcagtattacttgacaaactgt
ggccaacaaacccacataacctacttattacttaataaattctgtcaccg
aggaaagacacaaacatgtaagtctgtttctgacgccaatgtcctcataa
caacgcagcagggaagtcctgagctacacaaactccacatggaagaatga
ctgacaagatgtaactaaacgtgaaagttaggacaggtgggagaatggaa
gatcggaggaaatgaaaggtagaagagaggaggggaaaggagggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_34175929_34176988
seq2: B6Ng01-150J20.b_46_1104 (reverse)

seq1  AACCATGCCTCCTGAGCTATAGGAATATTAGCGT-GTCTGGGTCCACATG  49
      ||||||| || |||||||||| |||||||||||| |||||||||||||| 
seq2  AACCATG-CTTCTGAGCTATAAGAATATTAGCGTGGTCTGGGTCCACAT-  48

seq1  GGACCTCACATATGAA-CCAGAAGGAATGACTAGGGAGACTAAGCTTGAG  98
      ||| |||||||||||| |||||| ||||||||| ||||||||||||||||
seq2  GGAACTCACATATGAACCCAGAA-GAATGACTA-GGAGACTAAGCTTGAG  96

seq1  AATCAGGCAGAGATAACCAACAAATGTCAAGTGCACAAACCGGGGTTTTA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGGCAGAGATAACCAACAAATGTCAAGTGCACAAACCGGGGTTTTA  146

seq1  ATTCACAAGGTCATTTGATAAATCATAGTCCAAAATAAATACCACATGTT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACAAGGTCATTTGATAAATCATAGTCCAAAATAAATACCACATGTT  196

seq1  CATGGAAAATAACCACCCTATGTTTTATATCTTTCTC-AAATATGTACAT  247
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CATGGAAAATAACCACCCTATGTTTTATATCTTTCTCAAAATATGTACAT  246

seq1  CTGTATATCAAGGCTCTACATTATGTGAATCATACATCTTAAACTGCTAC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATATCAAGGCTCTACATTATGTGAATCATACATCTTAAACTGCTAC  296

seq1  TTAGGCTTTTCTCTGCTCACATTTTCTTTGCTCTTTTTCTCTAACTACTC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCTTTTCTCTGCTCACATTTTCTTTGCTCTTTTTCTCTAACTACTC  346

seq1  AGACAAGACTCATTGGCCATTCTCTGCGTGACAGGCAGGCATAGCAATGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGACTCATTGGCCATTCTCTGCGTGACAGGCAGGCATAGCAATGG  396

seq1  CAGACTGCTTTTTGCCCTCATACCACCCACAGTTCCGTAGAGTGATAGTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTGCTTTTTGCCCTCATACCACCCACAGTTCCGTAGAGTGATAGTT  446

seq1  CTTAGCAAGTGTGAATCTTACTTTAACTAGAACACTGTCATAATGTGGGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCAAGTGTGAATCTTACTTTAACTAGAACACTGTCATAATGTGGGA  496

seq1  TCAGGGTCCTAGAAAACACCACGTGACTTTTTTTTTATTTAAGTAGACCG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGTCCTAGAAAACACCACGTGACTTTTTTTTTATTTAAGTAGACCG  546

seq1  TTTCCTAACTGTAAACTTGTGAGTTCCTGAGTATATTCTGTGTGTGTCTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTAACTGTAAACTTGTGAGTTCCTGAGTATATTCTGTGTGTGTCTT  596

seq1  TTCGCTTTCTGTGAGCCTCCTGAGGGCAGAGGCAGCCCCTACTCCGCTTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGCTTTCTGTGAGCCTCCTGAGGGCAGAGGCAGCCCCTACTCCGCTTG  646

seq1  TTCACGGTAGCTCCTAAGACAGCATGTGGCATAGCATAGAAAATCACAGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACGGTAGCTCCTAAGACAGCATGTGGCATAGCATAGAAAATCACAGT  696

seq1  TTTTAAAACATTTTTTCATTCATTATTTGAGCCTTTCACACATTGCATTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAACATTTTTTCATTCATTATTTGAGCCTTTCACACATTGCATTT  746

seq1  TCATGTCCCGTCTCCTCCCAGACCCATCCCCCATTCTATAAGCAACCGAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTCCCGTCTCCTCCCAGACCCATCCCCCATTCTATAAGCAACCGAC  796

seq1  CTTGTGTTCTCATTCTACTTTTAGATCAGAGTCCTGTCAGTAGTGCCTAC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGTTCTCATTCTACTTTTAGATCAGAGTCCTGTCAGTAGTGCCTAC  846

seq1  AGGCTCTTGGGCATGTAAGCATCCACTAGAGCATGTTACACCTATCAGGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCTTGGGCATGTAAGCATCCACTAGAGCATGTTACACCTATCAGGG  896

seq1  TCCTGAAACTTGAAGACTTAGCTCTCCCCTGCCAGCACCTATCAGTTACC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAAACTTGAAGACTTAGCTCTCCCCTGCCAGCACCTATCAGTTACC  946

seq1  ACAGACCCTCAGATATATGAGGGGCTTTGTACCCACTCCCAACTCCACAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACCCTCAGATATATGAGGGGCTTTGTACCCACTCCCAACTCCACAC  996

seq1  TGGCATTTGGTTTGTCCTGAGCTTGAACAGTTTTGTACGTACTGTCACAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATTTGGTTTGTCCTGAGCTTGAACAGTTTTGTACGTACTGTCACAA  1046

seq1  GTGCTGTGAATTC  1060
      |||||||||||||
seq2  GTGCTGTGAATTC  1059

seq1: chr18_33977593_33978143
seq2: B6Ng01-150J20.g_67_617

seq1  GAATTCAAGCAGTTTCACAGAGGCCCCAGAAGCAGAAACTGATAGGGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGCAGTTTCACAGAGGCCCCAGAAGCAGAAACTGATAGGGAAG  50

seq1  AAAAAAAGCAAAAAACAAAACAAAACAAAAACAAACAAACAAACAAACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGCAAAAAACAAAACAAAACAAAAACAAACAAACAAACAAACAA  100

seq1  AACACCCTTTATTTTGAATCTCTATCTGCTTTATCTAGCCATTCTACAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCCTTTATTTTGAATCTCTATCTGCTTTATCTAGCCATTCTACAGC  150

seq1  ACACAGATATGCACAGGTAGGTGGACAGAAATCAGTGTTCTTACTGTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGATATGCACAGGTAGGTGGACAGAAATCAGTGTTCTTACTGTGAT  200

seq1  GTGTAACGTGTGACCTGAGAGCTCACGTCAGGAATAAAGACTGGAATGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAACGTGTGACCTGAGAGCTCACGTCAGGAATAAAGACTGGAATGGA  250

seq1  AGAACCCGTGTGTCTCAACAGGCCACTGAGGAAATCAGTATTACTTGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCCGTGTGTCTCAACAGGCCACTGAGGAAATCAGTATTACTTGACA  300

seq1  AACTGTGGCCAACAAACCCACATAACCTACTTATTACTTAATAAATTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTGGCCAACAAACCCACATAACCTACTTATTACTTAATAAATTCTG  350

seq1  TCACCGAGGAAAGACACAAACATGTAAGTCTGTTTCTGACGCCAATGTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCGAGGAAAGACACAAACATGTAAGTCTGTTTCTGACGCCAATGTCC  400

seq1  TCATAACAACGCAGCAGGGAAGTCCTGAGCTACACAAACTCCACATGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAACAACGCAGCAGGGAAGTCCTGAGCTACACAAACTCCACATGGAA  450

seq1  GAATGACTGACAAGATGTAACTAAACGTGAAAGTTAGGACAGGTGGGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGACTGACAAGATGTAACTAAACGTGAAAGTTAGGACAGGTGGGAGA  500

seq1  ATGGAAGATCGGAGGAAATGAAAGGTAGAAGAGAGGAGGGGAAAGGAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGATCGGAGGAAATGAAAGGTAGAAGAGAGGAGGGGAAAGGAGGG  550

seq1  G  551
      |
seq2  G  551