BAC Information

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BAC

Clone NameB6Ng01-150L23
Chromosome18 (Build37)
Map Location 50,347,697 - 50,348,795
singlet/doubletsinglet
Overlap geneHsd17b4
Upstream geneDtwd2, Dmxl1, Tnfaip8, LOC626721
Downstream geneLOC667233, Gm93, Hdhd1a, LOC100042373, LOC100042385, Prr16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150L23.bB6Ng01-150L23.g
ACCDH946748DH946749
length1,2111,090
definitionDH946748|Mus musculus domesticus DNA, BAC clone: B6Ng01-150L23, 5' end.DH946749|Mus musculus domesticus DNA, BAC clone: B6Ng01-150L23, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagctctgagccccatttttgaatggggttatttgatt
ttctggagaccaccttcttgagttttttatctatattggatattagtccc
ctatccaatttgggataggtaaagatcctgtcccaatctgttggtggcct
ttttgtcttattgatggtgtcttttgctttgcagaagctttgcaatttta
tgagatcccatttatcgattcttgatcttacagcacaagccattgctgtt
ctattgaggaattttccccctgtacccatatcttcgaggcttttccctac
tttctcctctataagtttcagtgtctctggttttatgtggagatccttaa
tccacttagatttgaccttagtacaaggagatagaaatggatcaattcgc
atttttctacatgataaccgccagttgtgccagcaccatttgttgaaaat
gctgtcttttttccactggatggttttagctcccttgtcaaagatcaagt
gatcataggtgtgtgggttcatctctgggtcttcaattctgttccattgg
tctacttgtctgtcattataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtccagcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatctgccgattgccctttctaattagttgaagaattgtgttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagacatgaagttcttatcata
cagatctttcacttccttagttagagtcacgccgagatatttatattatt
tgtgactattaagaaggtgtgtttccctaatttctttctcagcctgttat
cctttgtgtacagaaagccaatgactgttgagtattttatattccagcta
cttcactgaagctgtttatcagccttagagtctcctgggtgaatttaagg
tcacgtatatggtacctatcaatcatctgccaagggagatttgaacctct
ccttccatttggaatcctggatcccttgtgtggtcaaataggcctcgggc
gaggagcactc
gaattccccactgctgtccagtgcccaagagtagcaccgctccaaaggcc
atcagtcccctctgtgtcccatgtgtcccaacatcatttgcaaagtcttt
taacaataaattctggccgagagattaaaaattgcaaagattgtaaagag
aacagttatttttcagctagcacttcaaattgttagagttttgtcccatt
ttgtgaaagtatatgtacttaagagtaacttggagattgggtgttgtaag
ggtgaaggctactctgttattccaagaacaaagacattctctgtcaaaga
gtagttatcaataccagaaagttaacactggtacagtgttatctgctcta
acacttcagtaatgctccactctttgtcccaatagtgttgtttaaagcaa
aggaataataacagtagtggtagcaacagtagaaatggagagagggggag
aagtactctgggtgtggcttggtcacacattacactcagttaagtctctt
gttgcaaccttgatgcatttgtctgtctcatttgttaccttgatggattg
gaaaatttactttgaataatattcattagtttgtatttatttgatatcat
tcatgattaggttgttgaacttttggccaaaattgtagcaaagtattgtg
ttcttgcagtatctttttttcttgtaacaaaacaaaaccaaaccaaaccc
cttatattttagtgggagtggtagctcccttctgtaatcctagcatttag
gaagaagaggtaggaggatagccctcgagtttgaggacagcctaggctcc
tgggtgaatcatgttttcatttgttctgttgttggtgcataaagcacctt
ccctctcactcctttcacccactgaactgttgttactaatgtctctcgac
agagaagtagatggtaccagggcaggctggattgtgcccactgagccttg
ccatcctcggcagaggaggcaaagcagtccagcctgtgatttaccttgcc
cttccctgtagggccagtcattgagccaacaatttctgaactctttttag
agactgagtggaccataaattggaggtaatcacttcataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_50347697_50348795
seq2: B6Ng01-150L23.g_67_1156

seq1  GAATTCCCCACTGCTGTCCAGTGCCCAAGAGTAGCACCGCTCCAAAGGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCACTGCTGTCCAGTGCCCAAGAGTAGCACCGCTCCAAAGGCC  50

seq1  ATCAGTCCCCTCTGTGTCCCATGTGTCCCAACATCATTTGCAAAGTCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTCCCCTCTGTGTCCCATGTGTCCCAACATCATTTGCAAAGTCTTT  100

seq1  TAACAATAAATTCTGGCCGAGAGATTAAAAATTGCAAAGATTGTAAAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAATAAATTCTGGCCGAGAGATTAAAAATTGCAAAGATTGTAAAGAG  150

seq1  AACAGTTATTTTTCAGCTAGCACTTCAAATTGTTAGAGTTTTGTCCCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTTATTTTTCAGCTAGCACTTCAAATTGTTAGAGTTTTGTCCCATT  200

seq1  TTGTGAAAGTATATGTACTTAAGAGTAACTTGGAGATTGGGTGTTGTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAAAGTATATGTACTTAAGAGTAACTTGGAGATTGGGTGTTGTAAG  250

seq1  GGTGAAGGCTACTCTGTTATTCCAAGAACAAAGACATTCTCTGTCAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAGGCTACTCTGTTATTCCAAGAACAAAGACATTCTCTGTCAAAGA  300

seq1  GTAGTTATCAATACCAGAAAGTTAACACTGGTACAGTGTTATCTGCTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTATCAATACCAGAAAGTTAACACTGGTACAGTGTTATCTGCTCTA  350

seq1  ACACTTCAGTAATGCTCCACTCTTTGTCCCAATAGTGTTGTTTAAAGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTCAGTAATGCTCCACTCTTTGTCCCAATAGTGTTGTTTAAAGCAA  400

seq1  AGGAATAATAACAGTAGTGGTAGCAACAGTAGAAATGGAGAGAGGGGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATAATAACAGTAGTGGTAGCAACAGTAGAAATGGAGAGAGGGGGAG  450

seq1  AAGTACTCTGGGTGTGGCTTGGTCACACATTACACTCAGTTAAGTCTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACTCTGGGTGTGGCTTGGTCACACATTACACTCAGTTAAGTCTCTT  500

seq1  GTTGCAACCTTGATGCATTTGTCTGTCTCATTTGTTACCTTGATGGATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCAACCTTGATGCATTTGTCTGTCTCATTTGTTACCTTGATGGATTG  550

seq1  GAAAATTTACTTTGAATAATATTCATTAGTTTGTATTTATTTGATATCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTTACTTTGAATAATATTCATTAGTTTGTATTTATTTGATATCAT  600

seq1  TCATGATTAGGTTGTTGAACTTTTGGCCAAAATTGTAGCAAAGTATTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGATTAGGTTGTTGAACTTTTGGCCAAAATTGTAGCAAAGTATTGTG  650

seq1  TTCTTGCAGTATCTTTTTTTCTTGTAACAAAACAAAACCAAACCAAACCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGCAGTATCTTTTTTTCTTGTAACAAAACAAAACCAAACCAAACCC  700

seq1  CTTATATTTTAGTGGGAGTGGTAGCTCCCTTCTGTAATCCTAGCATTTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATATTTTAGTGGGAGTGGTAGCTCCCTTCTGTAATCCTAGCATTTAG  750

seq1  GAAGAAGAGGTAGGAGGATAGCCCTCGAGTTTGAGGACAGCCTAGGCTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGAGGTAGGAGGATAGCCCTCGAGTTTGAGGACAGCCTAGGCTCC  800

seq1  TGGGTGAATCAGGTTTTCATTTGTTCTGTTGTTTGGTGCATAAAGCACCT  850
      ||||||||||| ||||||||||||||||||| ||||||||||||||||||
seq2  TGGGTGAATCATGTTTTCATTTGTTCTGTTG-TTGGTGCATAAAGCACCT  849

seq1  TCCCTCTCACTCCTTTCACCCACTGAACTGTTGTTACTAATGTCTCTCGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTCACTCCTTTCACCCACTGAACTGTTGTTACTAATGTCTCTCGA  899

seq1  CAGAGAAGTAGATGGTACCAGGGGCAGGCTGGATTTGTGCCCACTGAGCC  950
      |||||||||||||||||||| |||||||||||| |||||||||||||| |
seq2  CAGAGAAGTAGATGGTACCA-GGGCAGGCTGGA-TTGTGCCCACTGAG-C  946

seq1  CTGGCCATCCTCGGCAGAGGAGGCAAAAGCAGTCCAGCCTGTGATTTTAC  1000
      || ||||||||||||||||||||| ||||||||||||||||||| |||||
seq2  CTTGCCATCCTCGGCAGAGGAGGC-AAAGCAGTCCAGCCTGTGA-TTTAC  994

seq1  CTTGCCCCTTCCCTGTAGGGGCAGTCAATTAAAGCCAAACAATTTCTGAA  1050
      |||| ||||||||||||||| ||||||  |  |||| |||||||||||||
seq2  CTTG-CCCTTCCCTGTAGGGCCAGTCA--TTGAGCC-AACAATTTCTGAA  1040

seq1  CTC-TTTTAGAGACTTAGT-GATCATAAATTGGAAGTGTAATCAC-TCAT  1097
      ||| ||||||||||| ||| || |||||||||||   |||||||| ||||
seq2  CTCTTTTTAGAGACTGAGTGGACCATAAATTGGA--GGTAATCACTTCAT  1088

seq1  AA  1099
      ||
seq2  AA  1090