BAC Information

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BAC

Clone NameB6Ng01-150N09
Chromosome18 (Build37)
Map Location 34,774,457 - 34,774,970
singlet/doubletsinglet
Overlap geneBrd8
Upstream geneLOC100041258, Epb4.1l4a, EG666296, Ppia-ps18_318.1, Ppia-ps18_319.1, LOC666313, Apc, Srp19, Reep5, Pkd2l2, 2610024E20Rik, Wnt8a, Nme5, 4933408B17Rik
Downstream geneKif20a, Cdc23, Gfra3, Cdc25c, LOC100041859, 2810012G03Rik, LOC100041879, LOC100041887, Jmjd1b, Reep2, Egr1, Etf1, Hspa9, LOC100041377, EG626954, LOC100041951, Ctnna1, Lrrtm2, Sil1, LOC100041423, LOC666460, LOC666462, EG383341, EG436583, Matr3, Paip2, Slc23a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150N09.bB6Ng01-150N09.g
ACCDH946812DH946813
length945331
definitionDH946812|Mus musculus domesticus DNA, BAC clone: B6Ng01-150N09, 5' end.DH946813|Mus musculus domesticus DNA, BAC clone: B6Ng01-150N09, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagaaatcctcccatccctgcctccctaggactgggaataaaggc
ttgagccaccactcccgggtatatttaatttttttaatttttaaatttta
tttgttttatttatttttcttttttttcaagatgtggtttctctgtgtaa
ccctggctgtcctggaactcactctgtagaccaggctggccttgaaccat
taatctgaacgtttttgcttcccaaatgctgggattagaggcatgtgaca
ccactgcccggattaattttatttgtttgaaaataccttccttccttcct
ccttccttcctcccttttctttctttctttctttctttctttctttcttt
ctttctttctttctttctttctttcttttttctctctctctttctctctt
tctattagttttttttttgttttgttttgtttttttggagatatggtttc
tctagtcctagctgacttgtaagccagggtgaccttgaaagcagaaatct
gccttctttctttctttctttctttctttctttctttctttctttctttc
tttctttctttctttcttccaaaaatgctcagggacatcactctccctcc
agccagagaagagtctcaggaaatgtatgtgagcttgctttgctttgttt
tgtggggccaaatgtgacagacatttcttttggctttgtgtgttttgcca
gccagctctcttgctctgctcactcactcactcactcactcactcactca
ctcactcactcactcattcactcattagcttgcttactgtggttttcact
tctatctatctctgcagggttccaagactgctctttgggattcaaacggg
agccgcttttggactgactggctgccttcctcctcctccccctcctcccc
cttctgcttcagattatttatatatgtaagtacactgtagcagtt
acagggaaatcatcactcagggacttcaggcagaaaactagccagtcagc
ctctggatagacaaggctcaacagttcagagaaccaggccatcgcaaata
gttcacagacctgcaaggaagacatgcagatccctgccccccaccccacc
cctcccccagccccacccaaacatagggagaaaaggcagtgtgggggagg
gggaggtgctgtgagagaatttagatagctcgaagaaataaatagctgga
gacttcattcatttactgattttattgagtatatggtgaaagggaaaatg
gttctaaaacgatatttctgggcacagtgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_34774457_34774970
seq2: B6Ng01-150N09.b_182_380 (reverse)

seq1  AAAGAAAGAAAGAAAGAAAAATGTGATAAGCAAGCTCGGAAACAAACTTT  50
                                                        
seq2  --------------------------------------------------  0

seq1  CAGAGTTTCAACAAAGAGTAATAAGTCTCAGTGAGGATATCTATTCACGA  100
                                                        
seq2  --------------------------------------------------  0

seq1  TTGTGTCGTTAGCTGGCCGTGGTGGGAAGCAGAGGCAAAGGATCTCTGAG  150
                                                        
seq2  --------------------------------------------------  0

seq1  TTTAAGGTTGGCCTGGTCTACATAGTGAGTTCTATGACCACCAGAGATAC  200
                                                        
seq2  --------------------------------------------------  0

seq1  ATAGTGAAACCCTACCTACCTCTAAAGAGACTCACTGTGTGTCTAGGGCT  250
                                                        
seq2  --------------------------------------------------  0

seq1  GGGAAGGTGGCTTAGTGGGTAAATAACCTGAACTCAATTCCCAGAACCCA  300
                          ||| ||   |||   ||     | ||   |
seq2  --------------------AAAGAA--AGAAAGAAA----GAAAAGGGA  24

seq1  GGATGAAACTGATTGCTGAGAGTTAGCCTCTGACTTCCATACACGTACAC  350
      ||| | ||           |||  ||     ||     |   | |||   
seq2  GGAAGGAA----------GGAGGAAG-----GA-----AGGAAGGTATTT  54

seq1  ACAAGCACTACTACTATTTTTTTTTTTTTAAATGGCGCTGGGCAGTGGTG  400
       |||  || | ||  |||            |||    | |||||||||||
seq2  TCAA--ACAAATAAAATT------------AAT----CCGGGCAGTGGTG  86

seq1  GCACATGCCTTTAATCTCAGTACTTGGGAGGCAGAGGCAGGCAGATTTCT  450
       ||||||||| ||||| ||| | |||||| ||| |  |   ||||||  |
seq2  TCACATGCCTCTAATCCCAGCATTTGGGAAGCAAAAACGTTCAGATTAAT  136

seq1  GAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGC  500
      | |||  |||||||||||||||||||||||||||||||||||||||||| 
seq2  G-GTTCAAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGT  185

seq1  TACACAGAGAAACC  514
      ||||||||||||||
seq2  TACACAGAGAAACC  199