BAC Information

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BAC

Clone NameB6Ng01-150N13
Chromosome18 (Build37)
Map Location 87,033,390 - 87,180,880
singlet/doubletdoublet
Overlap geneLOC435580, LOC546719
Upstream geneLOC545270, LOC665402, Neto1, Cbln2, LOC100039872, LOC100039881, LOC665437
Downstream geneLOC383318, Ppia-ps18_1039.1, LOC329008
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150N13.bB6Ng01-150N13.g
ACCDH946820DH946821
length1,1371,116
definitionDH946820|Mus musculus domesticus DNA, BAC clone: B6Ng01-150N13, 5' end.DH946821|Mus musculus domesticus DNA, BAC clone: B6Ng01-150N13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,179,725 - 87,180,880)(87,033,390 - 87,034,511)
sequence
gaattctagaatgccatactctcaatcatatgcttgtgctttaacactag
gcactgtgaaatgaaaaaaaagtgtagttttctcatcagaagtaagcata
ctacttaacactactgaagagtagaccatatgccatgttttaaattcatt
ctcatatcttgtggagaaggaaacatttcatatatctggttgtaagcttg
tctatgtagaactgcatgccaacaacaacaacaacaaacaacaacaaaaa
acccacttgcctctttcattcctcctgcttagaaaacaattcttttatgc
ttgttttactttttatttatttattttttaaccaaaggttacctgtcatt
tgctcacataataatgtttaaaatagaatactgagggctggcaagatggc
tgctcttctgaagctcctgagttcaagtcccagcaaccacatggtggccc
acaaccgtccgtaatgagatctgatgccctcttctggggtgtctgaagac
agctacagtgtacttacatataataaataataaataaataataaataaat
aaatctttttaaaaaaggaaaaaaataaataaaatagaatactgaaaaga
aaaataaaactcaataatttataggaaatggttaacacggcaagaaaatg
ccatttttactcatttcttcaaaagcctagtttcatattttcctctgata
cataaatatttttgtatctgaaattcgacttatcacacttaatagcatga
agtggacactataactctagtaactaaagcaaaatatagactatacattg
gtatgcacaaccgtagtcttgaatggaatggtaagacactaaggaacaca
agcaacaacaaatgtattctttttttccaattgtaaaaagattacctttg
tgatgaaaatacaagattatagaccgagctgtgcatctataaatttacgt
caaatgaggggaactggaagagagaggacctgatattggatgtaatagaa
tttaaaagacacaaattaggagaaaatgtaatatgggagcttcgagagaa
agtgaggaagtttgctatatccaattgtattctcatattaaaaaaaagag
aaatagcaggtggagagtgacttttctgggacggtga
gaattcaatcattcaaatatttttgtgttagcaagaatttctattagtcc
ctatttatttagctgtagaggagtacttagtcatttcttccctccatcat
aaaaagttatatcactcactaccttaactagataagactatatttctcct
gactttagaccttatgcctttgatttcagattcttagtaacatactggct
tatttaagacagtgaaaagcatgcagctctgcagaatatccagtattgtg
gagattcatcacatctctgaactcaagatgtagagagaggatatttacag
gttatcctttacttgtgtagtgagatccattcaggctaaccttcataaaa
tgagaaaaggaaaagtacaacccttataaaaacatgtcttgtaactgcaa
tatattttcaagatatattgatttttaactcaccagagaacaactgttga
tattttttgagtgtaaataaatacaagtaaatattttttttaaagaaatc
aacaatttgtgacaaaaaaggttactggcaagtgactgcttaatagatgt
tgtctcattaaaatttaaattgaccataggctaactatgaaaattttatt
tgtggatcctgtatttcaaggatcaaaaaaagacatgactcatggaatct
tgaagtgtcacataacagactgatgataacttcttttattataataaaaa
gtcaatgcttcattcttctactctgctgatatgtaagcatcaactgtgag
taaattaactctcagattacactactgagaccctacgtatacaaatcatc
ataaattgtaagaggtgtggcatttgtttttgcattgtttctggaaacat
ctgactgaatgtgtgaagttaaggaatacatgtttagtgaatgacttagc
aactaaacaaataattatatctgctaagcttctgactgaaggcctggagg
gttgtgttttcagagttttactaatctggggaattcacagctgtgctata
acatcccatccacttgagtataatggacgtgtactaccatgtttttgtta
aacaggacttccacctaggtgactagaatatggttgtttgatcattgaat
caaattcactactatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_87179725_87180880
seq2: B6Ng01-150N13.b_46_1182 (reverse)

seq1  TCACCGTCCCAGAAAAGTCACTCTTCACCTGCTATTCTCTTTTTTTTTAA  50
      |||||||||||||||||||||||| ||||||||||| ||| ||||||| |
seq2  TCACCGTCCCAGAAAAGTCACTCTCCACCTGCTATT-TCTCTTTTTTTTA  49

seq1  TTATTGAGATTACAATTTGATTATAGCAAACTTTCCTTCACTTTCCTTCT  100
       || ||||| ||||||| || ||||||||||||  | ||||||||  |||
seq2  ATA-TGAGAATACAATTGGA-TATAGCAAACTT--CCTCACTTTC--TCT  93

seq1  TCCGAAGGCTCCCATA-TACATCTCTCCCTAATTTGTGTCCTTTTTAAAT  149
        |||| ||||||||| ||||| |   |||||||||||||  ||||||| 
seq2  --CGAA-GCTCCCATATTACATTTTCTCCTAATTTGTGTC--TTTTAAA-  137

seq1  TTCTATTTACATCCCAATATCAGGTCCTCTCTCCTTCCAGTTCCCCCTCA  199
      ||||| |||||| ||||||||||||||||||| ||||||||| |||||||
seq2  TTCTA-TTACAT-CCAATATCAGGTCCTCTCT-CTTCCAGTT-CCCCTCA  183

seq1  TTTGACGTAAATTTATAAGATGCACAGCTCGGTCTATAATCTTGTATTTT  249
      |||||||||||||||| ||||||||||||||||||||||||||||| |||
seq2  TTTGACGTAAATTTAT-AGATGCACAGCTCGGTCTATAATCTTGTA-TTT  231

seq1  TCATCACAAAGGTAATCTTTTTTACAATTGGAAAAAAAGAATACATTTGT  299
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCATCACAAAGGTAATC-TTTTTACAATTGGAAAAAAAGAATACATTTGT  280

seq1  TGTTGCTTGTGTTCCTTAGTGTCTTACCATTCCATTCAAGACTACGGTTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCTTGTGTTCCTTAGTGTCTTACCATTCCATTCAAGACTACGGTTG  330

seq1  TGCATACCAATGTATAGTCTATATTTTGCTTTAGTTACTAGAGTTATAGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATACCAATGTATAGTCTATATTTTGCTTTAGTTACTAGAGTTATAGT  380

seq1  GTCCACTTCATGCTATTAAGTGTGATAAGTCGAATTTCAGATACAAAAAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACTTCATGCTATTAAGTGTGATAAGTCGAATTTCAGATACAAAAAT  430

seq1  ATTTATGTATCAGAGGAAAATATGAAACTAGGCTTTTGAAGAAATGAGTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGTATCAGAGGAAAATATGAAACTAGGCTTTTGAAGAAATGAGTA  480

seq1  AAAATGGCATTTTCTTGCCGTGTTAACCATTTCCTATAAATTATTGAGTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGCATTTTCTTGCCGTGTTAACCATTTCCTATAAATTATTGAGTT  530

seq1  TTATTTTTCTTTTCAGTATTCTATTTTATTTATTTTTTTCCTTTTTTAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTCTTTTCAGTATTCTATTTTATTTATTTTTTTCCTTTTTTAAA  580

seq1  AAGATTTATTTATTTATTATTTATTTATTATTTATTATATGTAAGTACAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTATTTATTTATTATTTATTTATTATTTATTATATGTAAGTACAC  630

seq1  TGTAGCTGTCTTCAGACACCCCAGAAGAGGGCATCAGATCTCATTACGGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCTGTCTTCAGACACCCCAGAAGAGGGCATCAGATCTCATTACGGA  680

seq1  CGGTTGTGGGCCACCATGTGGTTGCTGGGACTTGAACTCAGGAGCTTCAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTGTGGGCCACCATGTGGTTGCTGGGACTTGAACTCAGGAGCTTCAG  730

seq1  AAGAGCAGCCATCTTGCCAGCCCTCAGTATTCTATTTTAAACATTATTAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCAGCCATCTTGCCAGCCCTCAGTATTCTATTTTAAACATTATTAT  780

seq1  GTGAGCAAATGACAGGTAACCTTTGGTTAAAAAATAAATAAATAAAAAGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCAAATGACAGGTAACCTTTGGTTAAAAAATAAATAAATAAAAAGT  830

seq1  AAAACAAGCATAAAAGAATTGTTTTCTAAGCAGGAGGAATGAAAGAGGCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAGCATAAAAGAATTGTTTTCTAAGCAGGAGGAATGAAAGAGGCA  880

seq1  AGTGGGTTTTTTGTTGTTGTTTGTTGTTGTTGTTGTTGGCATGCAGTTCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGTTTTTTGTTGTTGTTTGTTGTTGTTGTTGTTGGCATGCAGTTCT  930

seq1  ACATAGACAAGCTTACAACCAGATATATGAAATGTTTCCTTCTCCACAAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGACAAGCTTACAACCAGATATATGAAATGTTTCCTTCTCCACAAG  980

seq1  ATATGAGAATGAATTTAAAACATGGCATATGGTCTACTCTTCAGTAGTGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAGAATGAATTTAAAACATGGCATATGGTCTACTCTTCAGTAGTGT  1030

seq1  TAAGTAGTATGCTTACTTCTGATGAGAAAACTACACTTTTTTTTCATTTC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAGTATGCTTACTTCTGATGAGAAAACTACACTTTTTTTTCATTTC  1080

seq1  ACAGTGCCTAGTGTTAAAGCACAAGCATATGATTGAGAGTATGGCATTCT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGCCTAGTGTTAAAGCACAAGCATATGATTGAGAGTATGGCATTCT  1130

seq1  AGAATTC  1156
      |||||||
seq2  AGAATTC  1137

seq1: chr18_87033390_87034511
seq2: B6Ng01-150N13.g_67_1182

seq1  GAATTCAATCATTCAAATATTTTTGTGTTAGCAAGAATTTCTATTAGTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCATTCAAATATTTTTGTGTTAGCAAGAATTTCTATTAGTCC  50

seq1  CTATTTATTTAGCTGTAGAGGAGTACTTAGTCATTTCTTCCCTCCATCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTATTTAGCTGTAGAGGAGTACTTAGTCATTTCTTCCCTCCATCAT  100

seq1  AAAAAGTTATATCACTCACTACCTTAACTAGATAAGACTATATTTCTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTTATATCACTCACTACCTTAACTAGATAAGACTATATTTCTCCT  150

seq1  GACTTTAGACCTTATGCCTTTGATTTCAGATTCTTAGTAACATACTGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTAGACCTTATGCCTTTGATTTCAGATTCTTAGTAACATACTGGCT  200

seq1  TATTTAAGACAGTGAAAAGCATGCAGCTCTGCAGAATATCCAGTATTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAGACAGTGAAAAGCATGCAGCTCTGCAGAATATCCAGTATTGTG  250

seq1  GAGATTCATCACATCTCTGAACTCAAGATGTAGAGAGAGGATATTTACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTCATCACATCTCTGAACTCAAGATGTAGAGAGAGGATATTTACAG  300

seq1  GTTATCCTTTACTTGTGTAGTGAGATCCATTCAGGCTAACCTTCATAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCCTTTACTTGTGTAGTGAGATCCATTCAGGCTAACCTTCATAAAA  350

seq1  TGAGAAAAGGAAAAGTACAACCCTTATAAAAACATGTCTTGTAACTGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAAGGAAAAGTACAACCCTTATAAAAACATGTCTTGTAACTGCAA  400

seq1  TATATTTTCAAGATATATTGATTTTTAACTCACCAGAGAACAACTGTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTCAAGATATATTGATTTTTAACTCACCAGAGAACAACTGTTGA  450

seq1  TATTTTTTGAGTGTAAATAAATACAAGTAAATATTTTTTTTAAAGAAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTGAGTGTAAATAAATACAAGTAAATATTTTTTTTAAAGAAATC  500

seq1  AACAATTTGTGACAAAAAAGGTTACTGGCAAGTGACTGCTTAATAGATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTTGTGACAAAAAAGGTTACTGGCAAGTGACTGCTTAATAGATGT  550

seq1  TGTCTCATTAAAATTTAAATTGACCATAGGCTAACTATGAAAATTTTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCATTAAAATTTAAATTGACCATAGGCTAACTATGAAAATTTTATT  600

seq1  TGTGGATCCTGTATTTCAAGGATCAAAAAAAGACATGACTCATGGAATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGATCCTGTATTTCAAGGATCAAAAAAAGACATGACTCATGGAATCT  650

seq1  TGAAGTGTCACATAACAGACTGATGATAACTTCTTTTATTATAATAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTGTCACATAACAGACTGATGATAACTTCTTTTATTATAATAAAAA  700

seq1  GTCAATGCTTCATTCTTCTACTCTGCTGATATGTAAGCATCAACTGTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATGCTTCATTCTTCTACTCTGCTGATATGTAAGCATCAACTGTGAG  750

seq1  TAAATTAACTCTCAGATTACACTACTGAGACCCTACGTATACAAATCATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTAACTCTCAGATTACACTACTGAGACCCTACGTATACAAATCATC  800

seq1  ATAAATTGTAAGAGGTGTGGCATTTGTTTTTGCATTGTTTCTGGAAACAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTGTAAGAGGTGTGGCATTTGTTTTTGCATTGTTTCTGGAAACAT  850

seq1  CTGACTGAATGTGTGAAGTTAAGGAATACATGTTTAGTGAATGACTTAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTGAATGTGTGAAGTTAAGGAATACATGTTTAGTGAATGACTTAGC  900

seq1  AACTAAACAAATAATTATATCTGCTAAGCTTCTGACTGAAGGCCTGGAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAACAAATAATTATATCTGCTAAGCTTCTGACTGAAGGCCTGGAGG  950

seq1  GTTGTGTTTTCAGAGTTTTAACTAATCTGGGGAATTCACAGCTGTGCTAT  1000
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GTTGTGTTTTCAGAGTTTT-ACTAATCTGGGGAATTCACAGCTGTGCTAT  999

seq1  AACATCCCATCCACTTGAGTATAAATGGAACGTGTACTACAATG-TTTTG  1049
      |||||||||||||||||||||| ||||| ||||||||||| ||| |||||
seq2  AACATCCCATCCACTTGAGTAT-AATGG-ACGTGTACTACCATGTTTTTG  1047

seq1  TTATACAAGAC-TCCACCTTAGGTGACTTAAGATAATGGTTGTTTTGATC  1098
      ||| ||| ||| |||||| |||||||||  |||  ||||||| |||||||
seq2  TTAAACAGGACTTCCACC-TAGGTGACT--AGAATATGGTTG-TTTGATC  1093

seq1  ACTTTGATCAAATTCACTACTATG  1122
      | ||  ||||||||||||||||||
seq2  A-TTGAATCAAATTCACTACTATG  1116