BAC Information

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BAC

Clone NameB6Ng01-152D10
Chromosome18 (Build37)
Map Location 65,196,713 - 65,330,936
singlet/doubletdoublet
Overlap geneNedd4l
Upstream geneLOC629436, LOC667773, St8sia3, LOC433193, Onecut2, LOC667783, LOC100043304, Fech, Nars, Atp8b1, LOC629480
Downstream geneAlpk2, LOC667816, Malt1, LOC638570, LOC100042820, Zfp532, 5330437I02Rik, Sec11c, Grp, Rax, Cplx4, Lman1, Ccbe1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152D10.bB6Ng01-152D10.g
ACCDH947841DH947842
length1,202144
definitionDH947841|Mus musculus domesticus DNA, BAC clone: B6Ng01-152D10, 5' end.DH947842|Mus musculus domesticus DNA, BAC clone: B6Ng01-152D10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,329,716 - 65,330,936)(65,196,713 - 65,196,856)
sequence
gaattccatccttttaaatgaagaattactgagattttgccttgtgtaag
aagcagcgtgagtctgtgtgaacaggtgctagagtaaacaggatgtctgc
gtgactggcagaaaagggatgcccagggcgagcactagcctaggaatgcc
tgcatccatggaactgaatcacgaattgtactgggaagcaacgatctagg
ggaggcgttcagaaagacagtacctaccagggccagcaagacttctggga
ggttgaggaacagccctgttgctctgggggctgtttcccctgtggggtct
tctcccaccagttctcttaagtacctcagccggtgctgctttcttggaat
taggctgatcatgtgactcttctcttactgagccttctttctgtccttcc
ctagctaccctgcttactatgaactgctctggtgaaggtcacagccacag
agtcctcagtgccccgtgacccggaattagaggaagcaagaacatgcata
ttgcatttgccaaggactgtgactgaagaggcccctctatgggctttcca
cgctcaacagcacactccagaaaaatgaactggaaaactaactgggaagc
agctgactcggtggttatttctaagctatgtttatcaggcagggagagag
tatatatgaggaaccttcttgctaaaaaaatgctccttgacattttccca
gagacatcctaaaggatcagggaattccaagagcaacgaaccacatagca
tcctgaatccaggagcaagacaaacaccaacaaagagatgtaagctgtta
tgaccatgaaaagacagaccaagtggtccacagcctaaatggaagacacc
cacaacaaagccctacctcccttccagggttttaatctggactggctgga
agcctagtctgatgttctgtcatctaagcaatagacaatacgttttgact
tactgtggcttaaatgagcacaatgctttgactacatggaatattaaata
gcactttttactgtctccttttttttttttgatgagtccatgttttaagg
acagcatctgataggttctcagaagacacagtctagaaacatgaaactta
acaaacaatggcaacggctgtcttgtatggatacttctgactcccttatg
cttaatgtgttcagtctcaactagaactgtacggccacctttccggagct
ct
tgcacggaggaaagtacaagtctagtgtccttgtcaggcaggtgaggccc
ggcgtggattatgagcaacaagtactgtttcttattttccacaaagtcct
ttaaaacagagtgagaaaggtgtgggggcatgggggggaggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_65329716_65330936
seq2: B6Ng01-152D10.b_48_1249 (reverse)

seq1  AGAGCTCCGGAGGTTGTTGCAGCTGACAGTTCAGTTC----TGAGACTGT  46
      |||||||||||         || || | || ||||||    |||||||| 
seq2  AGAGCTCCGGA--------AAGGTGGCCGTACAGTTCTAGTTGAGACTG-  41

seq1  AACACATCTAAGCATTTAGGGATGTCAGAAAGTATCCATTCCAAGAACAG  96
      ||||||| |||||| | ||||| ||||| ||||||||| | |||| ||||
seq2  AACACAT-TAAGCA-TAAGGGA-GTCAG-AAGTATCCA-TACAAG-ACAG  85

seq1  ACGTTGCCATTGTTTGTTAAAGTCTCAATGTTTCTAGACCTGTGTCTTCT  146
       ||||||||||||||||| |||| || ||||||||||| |||||||||||
seq2  CCGTTGCCATTGTTTGTT-AAGTTTC-ATGTTTCTAGA-CTGTGTCTTCT  132

seq1  GAGAACCTATCAGATGGCCTGTCCCTAAAACAT-GACTCATCAAAAAAAA  195
      ||||||||||||||||  |||||| |||||||| ||||||||  ||||||
seq2  GAGAACCTATCAGATG--CTGTCCTTAAAACATGGACTCATC--AAAAAA  178

seq1  AAAAAAGGAGAACAGTAAAAAGTGCTATTTAATATTCCATGTAGTCAAAG  245
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGGAG-ACAGTAAAAAGTGCTATTTAATATTCCATGTAGTCAAAG  227

seq1  CAATTGTGCTCATTTAAGCCACAGTAAGTCAAAACGTATTGTCTATTTGC  295
      | ||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  C-ATTGTGCTCATTTAAGCCACAGTAAGTCAAAACGTATTGTCTA-TTGC  275

seq1  TTAGATGACAGAACATCAGACTAGGCTTCCAGCCAGTCCAGATTAAAACC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATGACAGAACATCAGACTAGGCTTCCAGCCAGTCCAGATTAAAACC  325

seq1  CTGGAAGGGAGGTAGGGCTTTGTTGTGGGTGTCTTCCATTTAGGCTGTGG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGGGAGGTAGGGCTTTGTTGTGGGTGTCTTCCATTTAGGCTGTGG  375

seq1  ACCACTTGGTCTGTC-TTTCATGGTCATAACAGCTTACATCTCTTTGTTG  444
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ACCACTTGGTCTGTCTTTTCATGGTCATAACAGCTTACATCTCTTTGTTG  425

seq1  GTGTTTGTCTTGCTCCTGGATTCAGGATGCTATGTGGTTCGTTGCTCTTG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGTCTTGCTCCTGGATTCAGGATGCTATGTGGTTCGTTGCTCTTG  475

seq1  GAATTCCCTGATCCTTTAGGATGTCTCTGGGAAAATGTCAAGGAGCATTT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGATCCTTTAGGATGTCTCTGGGAAAATGTCAAGGAGCATTT  525

seq1  TTTTAGCAAGAAGGTTCCTCATATATACTCTCTCCCTGCCTGATAAACAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGCAAGAAGGTTCCTCATATATACTCTCTCCCTGCCTGATAAACAT  575

seq1  AGCTTAGAAATAACCACCGAGTCAGCTGCTTCCCAGTTAGTTTTCCAGTT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAGAAATAACCACCGAGTCAGCTGCTTCCCAGTTAGTTTTCCAGTT  625

seq1  CATTTTTCTGGAGTGTGCTGTTGAGCGTGGAAAGCCCATAGAGGGGCCTC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTCTGGAGTGTGCTGTTGAGCGTGGAAAGCCCATAGAGGGGCCTC  675

seq1  TTCAGTCACAGTCCTTGGCAAATGCAATATGCATGTTCTTGCTTCCTCTA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTCACAGTCCTTGGCAAATGCAATATGCATGTTCTTGCTTCCTCTA  725

seq1  ATTCCGGGTCACGGGGCACTGAGGACTCTGTGGCTGTGACCTTCACCAGA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCGGGTCACGGGGCACTGAGGACTCTGTGGCTGTGACCTTCACCAGA  775

seq1  GCAGTTCATAGTAAGCAGGGTAGCTAGGGAAGGACAGAAAGAAGGCTCAG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTCATAGTAAGCAGGGTAGCTAGGGAAGGACAGAAAGAAGGCTCAG  825

seq1  TAAGAGAAGAGTCACATGATCAGCCTAATTCCAAGAAAGCAGCACCGGCT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGAAGAGTCACATGATCAGCCTAATTCCAAGAAAGCAGCACCGGCT  875

seq1  GAGGTACTTAAGAGAACTGGTGGGAGAAGACCCCACAGGGGAAACAGCCC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTACTTAAGAGAACTGGTGGGAGAAGACCCCACAGGGGAAACAGCCC  925

seq1  CCAGAGCAACAGGGCTGTTCCTCAACCTCCCAGAAGTCTTGCTGGCCCTG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGCAACAGGGCTGTTCCTCAACCTCCCAGAAGTCTTGCTGGCCCTG  975

seq1  GTAGGTACTGTCTTTCTGAACGCCTCCCCTAGATCGTTGCTTCCCAGTAC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTACTGTCTTTCTGAACGCCTCCCCTAGATCGTTGCTTCCCAGTAC  1025

seq1  AATTCGTGATTCAGTTCCATGGATGCAGGCATTCCTAGGCTAGTGCTCGC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCGTGATTCAGTTCCATGGATGCAGGCATTCCTAGGCTAGTGCTCGC  1075

seq1  CCTGGGCATCCCTTTTCTGCCAGTCACGCAGACATCCTGTTTACTCTAGC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGCATCCCTTTTCTGCCAGTCACGCAGACATCCTGTTTACTCTAGC  1125

seq1  ACCTGTTCACACAGACTCACGCTGCTTCTTACACAAGGCAAAATCTCAGT  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTTCACACAGACTCACGCTGCTTCTTACACAAGGCAAAATCTCAGT  1175

seq1  AATTCTTCATTTAAAAGGATGGAATTC  1221
      |||||||||||||||||||||||||||
seq2  AATTCTTCATTTAAAAGGATGGAATTC  1202

seq1: chr18_65196713_65196856
seq2: B6Ng01-152D10.g_73_216

seq1  TGCACGGAGGAAAGTACAAGTCTAGTGTCCTTGTCAGGCAGGTGAGGCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACGGAGGAAAGTACAAGTCTAGTGTCCTTGTCAGGCAGGTGAGGCCC  50

seq1  GGCGTGGATTATGAGCAACAAGTACTGTTTCTTATTTTCCACAAAGTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTGGATTATGAGCAACAAGTACTGTTTCTTATTTTCCACAAAGTCCT  100

seq1  TTAAAACAGAGTGAGAAAGGTGTGGGGGCATGGGGGGGAGGGGG  144
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACAGAGTGAGAAAGGTGTGGGGGCATGGGGGGGAGGGGG  144