BAC Information

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BAC

Clone NameB6Ng01-152O13
Chromosome18 (Build37)
Map Location 23,732,413 - 23,873,491
singlet/doubletdoublet
Overlap geneDtna
Upstream geneNol4, LOC100040579, LOC665797
Downstream geneMapre2, EG665813, LOC100040623, Zfp397, C230097I24Rik, Zfp35, Zfp191, D030070L09Rik, Galnt1, LOC665586, 2700062C07Rik, BC021395, Slc39a6, Epl2, Mocos, Fhod3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152O13.bB6Ng01-152O13.g
ACCDH948365DH948366
length1,1231,110
definitionDH948365|Mus musculus domesticus DNA, BAC clone: B6Ng01-152O13, 5' end.DH948366|Mus musculus domesticus DNA, BAC clone: B6Ng01-152O13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,732,413 - 23,733,539)(23,872,374 - 23,873,491)
sequence
gaattcttcaatgtgcatctcttattttcttgctagttctctgaaaaaat
actactggcaacataatcataattttattagctttaaagccagtcacatc
tttccctttaagatacttcctcacaaagttggttatatgatgacagtggc
caccattttgttttgttttgttttaaatttggtttgttgctgttgttgtt
tgtttgcttgcttgcttgcttgtttgcttgctttttgccaatatcattcc
catatgtatctggttcactcaaagtcctcttatggcagtgaccagtgtta
cagggagtggtgttctaagctgcatttctaatactgatcctccaatgata
acattacatgtgggttgcttttctcatttctatggcaaaatacccgatag
aggtgtcctaagggaagacaggcctcatttgactcacagttttagagatt
ccatccaccatggccgatgggttctcattgtcaggaactgcaggagttcg
cagcccagatggttagacgggaagcaggctaagctgcagaaacaaggctg
accataacctacaggcctgtcttctcttcctcctactcggcactgccttc
tagctacaacctccccaaacagcaccatcagccggcaatcaaatatcgga
acacatgaacctgtggggagcatttcacaagcaaaacataaggggcggga
acaatgcaatagttgtaaaaaagcacctgctattctctgtgggtcaataa
tgtgctgacctggcactgtcatcgaatgttcctggggaggaggtgatgct
ggggagacacacaggactaacagcttcaggtgcacagcttcatagtgcat
ggtgtgacaaataataattacatacatacatacatacaacacacatacat
actatcattttatttaaggacttgatttagtctgtcttacattttctatt
catattttcaatatgaggattaatgtggcttttcctcctcaagacttagt
cctagttgttccaagattatatagattaatgctcgctagtggcaactttc
ggaaatactggcgaatggtacggaaatgagtaagctaactgtgtgtaact
tacgcattagagtctgcggtgtg
gaattcccagtgctttcaacctactgcaaggaggggccaagtgggctcag
cagctgggggcaaagaaaggaaggagttgtgctgctgtgatcaccagtct
cctcgttgtttgcttctttcaaagcaattgcacttctaggtctagagtct
ggcttttcagggcttgttatatttcaccctctctagtatcacccttagga
gaaagatgtgagtatggagaagaaatttgggagatgaaacaaacatcaag
aggagaactggggttgactccgaggtgcattgcctcatcacttagcactg
tgagctgttgggatctagacacagtaagagtaagggcagccttgggagct
tatatatacatacacattgcattgtttatcttcggcctccaggatagaga
gatgttcacttactaacatccttccactttggtggacaggaaggatgcta
cttagattcactctgagcctgcaatgaagtagctagaaagagctctcagg
aaggagaaattcaggtctaggagtaagaagccaagtgctggtagattgaa
atgttcggggtggaaggatattaaaaagcacatggtaagcccactttatt
gctctagaggttttccctttaattgaacagtggtgtccataaaatgaaaa
tgcttaaaatggaatttagcaaattagaatttccaaaatcgtcaaggccc
tttaaacaaaagcatcttcaaaattctgctgatacctaggatgacctttg
ccaagaaaaacagatttgttcgctgatctatttaagctaagttatgaagt
tttgtttctgctaataagactgcagagagaggtagatgtgatggagaata
aacatgtttcttggctcactagaacaaggaaagattatgtagtcacgctt
atgtagacaggcagagatttgtttagagagcattagtacagctgagtaga
actgtatctattttagaccagtaaataaaccagtcttgggcctaagaccc
ttggtagcataagaaacttcagagaaatagaatggtttggttaattttag
ccataatggaagctcccctctcctcctcttttttaaaggtagaaaggttt
atttgactcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_23732413_23733539
seq2: B6Ng01-152O13.b_46_1168

seq1  GAATTCTTCAATGTGCATCTCTTATTTTCTTGCTAGTTCTCTGAAAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAATGTGCATCTCTTATTTTCTTGCTAGTTCTCTGAAAAAAT  50

seq1  ACTACTGGCAACATAATCATAATTTTATTAGCTTTAAAGCCAGTCACATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTGGCAACATAATCATAATTTTATTAGCTTTAAAGCCAGTCACATC  100

seq1  TTTCCCTTTAAGATACTTCCTCACAAAGTTGGTTATATGATGACAGTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTTTAAGATACTTCCTCACAAAGTTGGTTATATGATGACAGTGGC  150

seq1  CACCATTTTGTTTTGTTTTGTTTTAAATTTGGTTTGTTGCTGTTGTTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATTTTGTTTTGTTTTGTTTTAAATTTGGTTTGTTGCTGTTGTTGTT  200

seq1  TGTTTGCTTGCTTGCTTGCTTGTTTGCTTGCTTTTTGCCAATATCATTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGCTTGCTTGCTTGCTTGTTTGCTTGCTTTTTGCCAATATCATTCC  250

seq1  CATATGTATCTGGTTCACTCAAAGTCCTCTTATGGCAGTGACCAGTGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTATCTGGTTCACTCAAAGTCCTCTTATGGCAGTGACCAGTGTTA  300

seq1  CAGGGAGTGGTGTTCTAAGCTGCATTTCTAATACTGATCCTCCAATGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAGTGGTGTTCTAAGCTGCATTTCTAATACTGATCCTCCAATGATA  350

seq1  ACATTACATGTGGGTTGCTTTTCTCATTTCTATGGCAAAATACCCGATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTACATGTGGGTTGCTTTTCTCATTTCTATGGCAAAATACCCGATAG  400

seq1  AGGTGTCCTAAGGGAAGACAGGCCTCATTTGACTCACAGTTTTAGAGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTCCTAAGGGAAGACAGGCCTCATTTGACTCACAGTTTTAGAGATT  450

seq1  CCATCCACCATGGCCGATGGGTTCTCATTGTCAGGAACTGCAGGAGTTCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCACCATGGCCGATGGGTTCTCATTGTCAGGAACTGCAGGAGTTCG  500

seq1  CAGCCCAGATGGTTAGACGGGAAGCAGGCTAAGCTGCAGAAACAAGGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCAGATGGTTAGACGGGAAGCAGGCTAAGCTGCAGAAACAAGGCTG  550

seq1  ACCATAACCTACAGGCCTGTCTTCTCTTCCTCCTACTCGGCACTGCCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATAACCTACAGGCCTGTCTTCTCTTCCTCCTACTCGGCACTGCCTTC  600

seq1  TAGCTACAACCTCCCCAAACAGCACCATCAGCCGGCAATCAAATATCGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTACAACCTCCCCAAACAGCACCATCAGCCGGCAATCAAATATCGGA  650

seq1  ACACATGAACCTGTGGGGAGCATTTCACAAGC-AAACATAAGGGGCGGGA  699
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ACACATGAACCTGTGGGGAGCATTTCACAAGCAAAACATAAGGGGCGGGA  700

seq1  ACAATGCAATAGTTGT-AAAAAGCACCTGCTATTCTCTGTGGGTCAATAA  748
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ACAATGCAATAGTTGTAAAAAAGCACCTGCTATTCTCTGTGGGTCAATAA  750

seq1  TGTGCTGACCTGGCACTGTCATCGAATGTTCCTGGGGAGGAGGTGATGCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGACCTGGCACTGTCATCGAATGTTCCTGGGGAGGAGGTGATGCT  800

seq1  GGGGAGACACACAGGACTAAACAGCTTCAGGTGGCACAGCTTCATAGTGC  848
      |||||||||||||||||| ||||||||||||| |||||||||||||||||
seq2  GGGGAGACACACAGGACT-AACAGCTTCAGGT-GCACAGCTTCATAGTGC  848

seq1  ATGGTGTGAACAAATAAATAATTACATACATACATACATACACACACACA  898
      |||||||| |||||| |||||||||||||||||||||||||| |||||||
seq2  ATGGTGTG-ACAAAT-AATAATTACATACATACATACATACA-ACACACA  895

seq1  TACATACTATCATTTTATTTTAGGACTTGATTTAGTCTGTCTTTACATTT  948
      |||||||||||||||||||| |||||||||||||||||||| ||||||||
seq2  TACATACTATCATTTTATTTAAGGACTTGATTTAGTCTGTC-TTACATTT  944

seq1  TCTATTTCATATTTTCAATATGAGAATTAATGT-GCTTTTCCTCCTCTAA  997
      |||| ||||||||||||||||||| |||||||| ||||||||||||| ||
seq2  TCTA-TTCATATTTTCAATATGAGGATTAATGTGGCTTTTCCTCCTC-AA  992

seq1  GACTTAGT-CTATGTGTTTC-AGAATAT-TAGGATAATGCTCGCATGTGC  1044
      |||||||| |||  |||| | ||| ||| |||  ||||||||||  ||| 
seq2  GACTTAGTCCTAGTTGTTCCAAGATTATATAGATTAATGCTCGCTAGTGG  1042

seq1  AACCTTTCGGTAATACTGGCAGAGTGTATGGGAAAGAAGTAAGCTAAACT  1094
       | ||||||| ||||||||| || ||    |||||  |||||||| ||||
seq2  CAACTTTCGGAAATACTGGC-GAATGGTACGGAAATGAGTAAGCT-AACT  1090

seq1  GT-TGTACATTACAGCATTAGAGTCTGCGTTGTG  1127
      || ||||  |||| ||||||||||||||| ||||
seq2  GTGTGTAACTTAC-GCATTAGAGTCTGCGGTGTG  1123

seq1: chr18_23872374_23873491
seq2: B6Ng01-152O13.g_68_1177 (reverse)

seq1  GGAGTCAAAATAACCTTTCCTCCCTTAAAAAAAGAGAGAGAGAGAGAGAT  50
      |||||||||  ||||||| || |||| |||||||||   ||||| |    
seq2  GGAGTCAAATAAACCTTT-CTACCTTTAAAAAAGAGGAGGAGAGGGGAGC  49

seq1  TTCCATTAT-GCTAAATATTAAACTAAAACATTTCTAATTTCTCTGAAGT  99
      ||||||||| |||||| ||||| |  ||||  |||| |||||||||||| 
seq2  TTCCATTATGGCTAAA-ATTAACC--AAACCATTCT-ATTTCTCTGAAG-  94

seq1  TTTCTTATGCTACCAAAGGGTCTTAAGCCCCAGGACTGGTTTATTTACTT  149
      |||||||||||||| ||||||||| || |||| ||||||||||||||| |
seq2  TTTCTTATGCTACC-AAGGGTCTT-AGGCCCAAGACTGGTTTATTTAC-T  141

seq1  GTTCTAAAATAGATACAGTTCTACTCGGCTGTACTAATGCCTCTCTAAAC  199
      | |||||||||||||||||||||||| |||||||||||| ||||||||||
seq2  GGTCTAAAATAGATACAGTTCTACTCAGCTGTACTAATG-CTCTCTAAAC  190

seq1  AAATCTCTGCCTGTCTACATAAGCGTGACT-CATATTCTTTCCTTGTTCT  248
      |||||||||||||||||||||||||||||| |||| ||||||||||||||
seq2  AAATCTCTGCCTGTCTACATAAGCGTGACTACATAATCTTTCCTTGTTCT  240

seq1  AGTGAGCCAAGAAACATGTTTATTCTCCATCACATCTACCTCTCTCTGGC  298
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGTGAGCCAAGAAACATGTTTATTCTCCATCACATCTACCTCTCTCT-GC  289

seq1  AGTCTTATTAGCAGAAACAAAACTTCATAACTTAGCTTAAATAGATCAGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTATTAGCAGAAACAAAACTTCATAACTTAGCTTAAATAGATCAGC  339

seq1  GAACAAATCTGTTTTTCTTGGC-AAGGTCATCCTAGGTATCAGCAGAATT  397
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GAACAAATCTGTTTTTCTTGGCAAAGGTCATCCTAGGTATCAGCAGAATT  389

seq1  TTGAAGATGCTTTTGTTTAAAGGGCCTTGACGATTTTGGAAATTCTAATT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGATGCTTTTGTTTAAAGGGCCTTGACGATTTTGGAAATTCTAATT  439

seq1  TGCTAAATTCCATTTTAAGCATTTTCATTTTATGGACACCACTGTTCAAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAATTCCATTTTAAGCATTTTCATTTTATGGACACCACTGTTCAAT  489

seq1  TAAAGGGAAAACCTCTAGAGCAATAAAGTGGGCTTACCATGTGCTTTTTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGGAAAACCTCTAGAGCAATAAAGTGGGCTTACCATGTGCTTTTTA  539

seq1  ATATCCTTCCACCCCGAACATTTCAATCTACCAGCACTTGGCTTCTTACT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCTTCCACCCCGAACATTTCAATCTACCAGCACTTGGCTTCTTACT  589

seq1  CCTAGACCTGAATTTCTCCTTCCTGAGAGCTCTTTCTAGCTACTTCATTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGACCTGAATTTCTCCTTCCTGAGAGCTCTTTCTAGCTACTTCATTG  639

seq1  CAGGCTCAGAGTGAATCTAAGTAGCATCCTTCCTGTCCACCAAAGTGGAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTCAGAGTGAATCTAAGTAGCATCCTTCCTGTCCACCAAAGTGGAA  689

seq1  GGATGTTAGTAAGTGAACATCTCTCTATCCTGGAGGCCGAAGATAAACAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTTAGTAAGTGAACATCTCTCTATCCTGGAGGCCGAAGATAAACAA  739

seq1  TGCAATGTGTATGTATATATAAGCTCCCAAGGCTGCCCTTACTCTTACTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATGTGTATGTATATATAAGCTCCCAAGGCTGCCCTTACTCTTACTG  789

seq1  TGTCTAGATCCCAACAGCTCACAGTGCTAAGTGATGAGGCAATGCACCTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAGATCCCAACAGCTCACAGTGCTAAGTGATGAGGCAATGCACCTC  839

seq1  GGAGTCAACCCCAGTTCTCCTCTTGATGTTTGTTTCATCTCCCAAATTTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCAACCCCAGTTCTCCTCTTGATGTTTGTTTCATCTCCCAAATTTC  889

seq1  TTCTCCATACTCACATCTTTCTCCTAAGGGTGATACTAGAGAGGGTGAAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCATACTCACATCTTTCTCCTAAGGGTGATACTAGAGAGGGTGAAA  939

seq1  TATAACAAGCCCTGAAAAGCCAGACTCTAGACCTAGAAGTGCAATTGCTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACAAGCCCTGAAAAGCCAGACTCTAGACCTAGAAGTGCAATTGCTT  989

seq1  TGAAAGAAGCAAACAACGAGGAGACTGGTGATCACAGCAGCACAACTCCT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGAAGCAAACAACGAGGAGACTGGTGATCACAGCAGCACAACTCCT  1039

seq1  TCCTTTCTTTGCCCCCAGCTGCTGAGCCCACTTGGCCCCTCCTTGCAGTA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCTTTGCCCCCAGCTGCTGAGCCCACTTGGCCCCTCCTTGCAGTA  1089

seq1  GGTTGAAAGCACTGGGAATTC  1118
      |||||||||||||||||||||
seq2  GGTTGAAAGCACTGGGAATTC  1110