BAC Information

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BAC

Clone NameB6Ng01-153C12
Chromosome18 (Build37)
Map Location 78,915,165 - 79,052,247
singlet/doubletdoublet
Overlap geneSetbp1
Upstream gene8030462N17Rik, 4930465K10Rik, Ccdc5, Atp5a1, Pstpip2, 5430411K18Rik, Cd33l3, Slc14a1, Slc14a2, EG620155
Downstream geneLOC100039242, LOC100039250
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-153C12.bB6Ng01-153C12.g
ACCDH948546DH948547
length1,1221,083
definitionDH948546|Mus musculus domesticus DNA, BAC clone: B6Ng01-153C12, 5' end.DH948547|Mus musculus domesticus DNA, BAC clone: B6Ng01-153C12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,915,165 - 78,916,290)(79,050,965 - 79,052,247)
sequence
gaattcaaaccatcttctcacttcaccccgtattctgcaggctgtgtctt
taacgaccctgtttcttgatgaactcttgtgttaacggcatactcagttt
tttccttggggaaaactgccttctcatgctttgctcattccaatgaagtg
agcatctaagatgtaagtattgacctcccaagttctttggcatcaaattc
atcttggagacataaagagatgaaaaaggccaacacggaaaactgatgaa
ctagaatcaaagtgttccccacgaggaaaagagacccagaggtgcgctcg
tgatttgattcagttcactgaccgtgtacatgatacttgcacgtgttttt
agggaggaggttgcagttttttgagagcttccagtatccttgcttcagaa
ccagactgttgcacaggccagaacattttatctctattttaaatggacac
acctgagctgcatttttggatacaagaaatgcatatgcatataaaataca
tatctgtgagagtcgatgattttgaactgaatcaggatacatatgagaca
atactttggttggcttcagaagggatgaactgggtggctaaggaacagcg
ttggcaataattttttactatacagtactagattcaaaactccctgcaaa
ggtaagaactggtatatgttcatctactatggggcatggttttctctgtg
tgtttctataacatttatcacacaaatttggtatctgcatgagcttattc
ttcttttctagaatggggatcacaggcttcatgcttggatattgagccaa
attcaaattattatcaaaaaaatcactaattccttcttaattctgtattc
ctattgcacaacaggtaacagttcgtggacaaacaccgcacctttctatt
actttagatatactgactactcaaagaattttttctatgttacagagact
ttcacaagataacacttgcccagagtaagaaaagaatgctgatctctcaa
ttcccttagctttctaggttcaactcctcagccgaactgaaaatttctca
aggatgcctttactcttccctgtctatgataaagaagctctcatgtcctc
ctcctgtgcaagatgtcctcag
gaattcctttaaagggaactgaaaaagctaagagtttcttgcatttctat
tgtcctcaaatggtgtggtacactctggccaaagcctggttttaagggtc
tctttgcacactgtgaggatgtggatataattttttatctctgtttatcc
ttagggtctctcccttgctctctctcttcctgggaagtccacaaatagtg
actgtaaaaaacagtcaagtaaaaaagaatgaattatttttatgcaaacg
aagaatttcagttagaaactactaaagattgtgtcatgtttttagtaata
tgtgagttgtcatggtggtacattgtcttcttaatgaaagagaatagatt
gcaggtcaccgaatggtccatttatcctatcctgccccgagtagctagtt
ttgccatttcttattcaaaagacttgttacctggtttcttgaagagcctc
gatgaagcctgcctggcatggggcactgtagaaaatttggacatgactaa
tgctggtgttttaaaagcatgaagagcactgacctatccaaactgaacta
gtcctacacagatgcattgtgggttttgtttgtttgtttgatgttcttaa
gtatcagttagctacaagaaaacaacagtagagttgtgctaagggagtta
aagaatctaaggtgcatagacctgagggagaaagcccaggcacaaaaatc
agttgcctcggcacattttattctgatttttttatggtcagacatttgtg
ttgggtactcagtgaactgtgatggtttctcagtgatggttcatctctat
acaatgcgtgctcctggggtgtctgcactatagcagtgcattcacatggt
tgctactcctttattcaaatcatctccacctcttgtctatatttccatgg
gatattccgtcgccttaggagagagaaagaaatagcatcctgtcaacgtt
cttgaagcgagcagaacgtcatcagaaaaactgaggtgtaaggtctattc
ttcatgaatatttgtgttggcaaaacggtgccttcctcttttttatagtc
tacttttagtattctttgtgtgagcatttacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_78915165_78916290
seq2: B6Ng01-153C12.b_48_1169

seq1  GAATTCAAACCATCTTCTCACTTCACCCCGTTTTCTGCAGGCTGTGTCTT  50
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GAATTCAAACCATCTTCTCACTTCACCCCGTATTCTGCAGGCTGTGTCTT  50

seq1  TAACGACCCTGTTTCTTGATGAACTCTTGTGTTAACGGCATACTCAGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGACCCTGTTTCTTGATGAACTCTTGTGTTAACGGCATACTCAGTTT  100

seq1  TTTCCTTGGGGAAAACTGCCTTCTCATGCTTTGCTCATTCCAATGAAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTGGGGAAAACTGCCTTCTCATGCTTTGCTCATTCCAATGAAGTG  150

seq1  AGCATCTAAGATGTAAGTATTGACCTCCCAAGTTCTTTGGCATCAAATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCTAAGATGTAAGTATTGACCTCCCAAGTTCTTTGGCATCAAATTC  200

seq1  ATCTTGGAGACATAAAGAGATGAAAAAGGCCAACACGGAAAACTGATGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGGAGACATAAAGAGATGAAAAAGGCCAACACGGAAAACTGATGAA  250

seq1  CTAGAATCAAAGTGTTCCCCACGAGGAAAAGAGACCCAGAGGTGCGCTCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAATCAAAGTGTTCCCCACGAGGAAAAGAGACCCAGAGGTGCGCTCG  300

seq1  TGATTTGATTCAGTTCACTGACCGTGTACATGATACTTGCACGTGTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTGATTCAGTTCACTGACCGTGTACATGATACTTGCACGTGTTTTT  350

seq1  AGGGAGGAGGTTGCAGTTTTTTGAGAGCTTCCAGTATCCTTGCTTCAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGAGGTTGCAGTTTTTTGAGAGCTTCCAGTATCCTTGCTTCAGAA  400

seq1  CCAGACTGTTGCACAGGCCAGAACATTTTATCTCTATTTTAAATGGACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACTGTTGCACAGGCCAGAACATTTTATCTCTATTTTAAATGGACAC  450

seq1  ACCTGAGCTGCATTTTTGGATACAAGAAATGCATATGCATATAAAATACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAGCTGCATTTTTGGATACAAGAAATGCATATGCATATAAAATACA  500

seq1  TATCTGTGAGAGTCGATGATTTTGAACTGAATCAGGATACATATGAGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGTGAGAGTCGATGATTTTGAACTGAATCAGGATACATATGAGACA  550

seq1  ATACTTTGGTTGGCTTCAGAAGGGATGAACTGGGTGGCTAAGGAACAGCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTGGTTGGCTTCAGAAGGGATGAACTGGGTGGCTAAGGAACAGCG  600

seq1  TTGGCAATAATTTTTTACTATACAGTACTAGATTCAAAACTCCCTGCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAATAATTTTTTACTATACAGTACTAGATTCAAAACTCCCTGCAAA  650

seq1  GGTAAGAACTGGTATATGTTCATCTACTATGGGGCATGGTTTTCTCTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGAACTGGTATATGTTCATCTACTATGGGGCATGGTTTTCTCTGTG  700

seq1  TGTTTCTATAACATTTATCACACAAATTTGGTATCTGCATGAGCTTATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTATAACATTTATCACACAAATTTGGTATCTGCATGAGCTTATTC  750

seq1  TTCTTTTCTAGAATGGGGATCACAGGCTTCATGCTTGGATATTGAGCCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTCTAGAATGGGGATCACAGGCTTCATGCTTGGATATTGAGCCAA  800

seq1  ATTCAAATTATTATCAAAAAAATCACTAATTCCTTCTTAATTCTGTATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAATTATTATCAAAAAAATCACTAATTCCTTCTTAATTCTGTATTC  850

seq1  CTATTGCACAACAGGTAACAGTTCGTGGACAAACACCGCACCTTTCTATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGCACAACAGGTAACAGTTCGTGGACAAACACCGCACCTTTCTATT  900

seq1  ACTTTAGATATACTGACTACTCAAAGAA-TTTTTCTATGTTAACAGAGAC  949
      |||||||||||||||||||||||||||| |||||||||||| ||||||||
seq2  ACTTTAGATATACTGACTACTCAAAGAATTTTTTCTATGTT-ACAGAGAC  949

seq1  TTTCACAAGATAAC-CTTGCCCAGAGTAAGGAAAAGCATGCTGA--TCTC  996
      |||||||||||||| |||||||||||||| |||||| |||||||  ||||
seq2  TTTCACAAGATAACACTTGCCCAGAGTAA-GAAAAGAATGCTGATCTCTC  998

seq1  CAGTCCCTTAGCTTTCTAGGTTCAACT-CTCAGCAGAACTG-AGATTTCT  1044
       | |||||||||||||||||||||||| |||||| |||||| | ||||||
seq2  AATTCCCTTAGCTTTCTAGGTTCAACTCCTCAGCCGAACTGAAAATTTCT  1048

seq1  CAAGGATGCCTTTACCTCTTTCCCTGTCTATGACAAATGAGCTCTCAATG  1094
      |||||||||||||| ||| |||||||||||||| |||  ||||||| |||
seq2  CAAGGATGCCTTTA-CTC-TTCCCTGTCTATGATAAAGAAGCTCTC-ATG  1095

seq1  TCCCTCCTCCTGTTGCAAAGATCTGTCCTCAG  1126
      | |||||||||| ||| ||||  |||||||||
seq2  T-CCTCCTCCTG-TGC-AAGA--TGTCCTCAG  1122

seq1: chr18_79050965_79052247
seq2: B6Ng01-153C12.g_71_1153 (reverse)

seq1  ATGTAAATGCAAATATTTGAAAATAAAGAAATCTGAAATTTAAAATAGTT  50
                                                        
seq2  --------------------------------------------------  0

seq1  CTGTCCTTCAAGTATTTTGGACAAACAGCACTCACTGTGCATCATTGGTT  100
                                                        
seq2  --------------------------------------------------  0

seq1  AGGTTTGCAGAAAGCAGATTAGGAAGGAATGGATGAAATATAAGTTCAGG  150
                                                        
seq2  --------------------------------------------------  0

seq1  CACTCAGACCCACTACCCATGCTCCTGGTCCTCTTCTCTGAATGATGAAT  200
                                               ||| | |||
seq2  -----------------------------------------ATG-TAAAT  8

seq1  GCTTACCCAAAGAATACATAAAGTAGATGATAACAAAAAAGAGGAAGGCC  250
      ||| || ||||||||||  ||||||||  ||   ||||||||||||||| 
seq2  GCTCACACAAAGAATACTAAAAGTAGACTAT---AAAAAAGAGGAAGGCA  55

seq1  ACGCTTTTGGCCAACAGATA-GTTCATGAAGGAACTGAGCCTAACACC-C  298
       ||  ||| ||||||| | |  |||||||| |||  || ||| ||||| |
seq2  CCG--TTTTGCCAACACAAATATTCATGAA-GAATAGA-CCTTACACCTC  101

seq1  AGTTCTTCTGCTGACGGTCTGCTCGCTTCCAGAACGTTGACAGGATGGCT  348
      |||| ||||| ||||| |||||||||||| |||||||||||||||| |||
seq2  AGTTTTTCTGATGACGTTCTGCTCGCTTCAAGAACGTTGACAGGAT-GCT  150

seq1  ATTTCTTTCTCTCTCCTATGGCTGACGGAATATCCCATGGAAATATAGAC  398
      |||||||||||||||||| ||| |||||||||||||||||||||||||||
seq2  ATTTCTTTCTCTCTCCTAAGGC-GACGGAATATCCCATGGAAATATAGAC  199

seq1  AAGAGGTGGAGATGATTTTGAATAAAGGAGTAGCAACCATGTGAATGCAC  448
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AAGAGGTGGAGATGA-TTTGAATAAAGGAGTAGCAACCATGTGAATGCAC  248

seq1  TGCTATAGTGCAGACACCCCAGGAGCACGCATTGTATAGAGATGAACCAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATAGTGCAGACACCCCAGGAGCACGCATTGTATAGAGATGAACCAT  298

seq1  CACTGAGAAACCATCACAGTTCACTGAGTACCCAACACAAATGTCTGACC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGAAACCATCACAGTTCACTGAGTACCCAACACAAATGTCTGACC  348

seq1  ATAAAAAAATCAGAATGAAATGTGCCGAGGCAACTGATTTTTGTGCCTGG  598
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ATAAAAAAATCAGAATAAAATGTGCCGAGGCAACTGATTTTTGTGCCTGG  398

seq1  GCTTTCTCCCTCAGGTCTATGCACCTTAGATTCTTTAACTCCCTTAGCAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTCCCTCAGGTCTATGCACCTTAGATTCTTTAACTCCCTTAGCAC  448

seq1  AACTCTACTGTTGTTTTCTTGTAGCTAACTGATACTTAAGAACATCAAAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTACTGTTGTTTTCTTGTAGCTAACTGATACTTAAGAACATCAAAC  498

seq1  AAACAAACAAAACCCACAATGCATCTGTGTAGGACTAGTTCAGTTTGGAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAAACCCACAATGCATCTGTGTAGGACTAGTTCAGTTTGGAT  548

seq1  AGGTCAGTGCTCTTCATGCTTTTAAAACACCAGCATTAGTCATGTCCAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAGTGCTCTTCATGCTTTTAAAACACCAGCATTAGTCATGTCCAAA  598

seq1  TTTTCTACAGTGCCCCATGCCAGGCAGGCTTCATCGAGGCTCTTCAAGAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTACAGTGCCCCATGCCAGGCAGGCTTCATCGAGGCTCTTCAAGAA  648

seq1  ACCAGGTAACAAGTCTTTTGAATAAGAAATGGCAAAACTAGCTACTCGGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGTAACAAGTCTTTTGAATAAGAAATGGCAAAACTAGCTACTCGGG  698

seq1  GCAGGATAGGATAAATGGACCATTCGGTGACCTGCAATCTATTCTCTTTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGATAGGATAAATGGACCATTCGGTGACCTGCAATCTATTCTCTTTC  748

seq1  ATTAAGAAGACAATGTACCACCATGACAACTCACATATTACTAAAAACAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGAAGACAATGTACCACCATGACAACTCACATATTACTAAAAACAT  798

seq1  GACACAATCTTTAGTAGTTTCTAACTGAAATTCTTCGTTTGCATAAAAAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAATCTTTAGTAGTTTCTAACTGAAATTCTTCGTTTGCATAAAAAT  848

seq1  AATTCATTCTTTTTTACTTGACTGTTTTTTACAGTCACTATTTGTGGACT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATTCTTTTTTACTTGACTGTTTTTTACAGTCACTATTTGTGGACT  898

seq1  TCCCAGGAAGAGAGAGAGCAAGGGAGAGACCCTAAGGATAAACAGAGATA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGAAGAGAGAGAGCAAGGGAGAGACCCTAAGGATAAACAGAGATA  948

seq1  AAAAATTATATCCACATCCTCACAGTGTGCAAAGAGACCCTTAAAACCAG  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTATATCCACATCCTCACAGTGTGCAAAGAGACCCTTAAAACCAG  998

seq1  GCTTTGGCCAGAGTGTACCACACCATTTGAGGACAATAGAAATGCAAGAA  1248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGGCCAGAGTGTACCACACCATTTGAGGACAATAGAAATGCAAGAA  1048

seq1  ACTCTTAGCTTTTTCAGTTCCCATTAAAGGAATTC  1283
      |||||||||||||||||||||| ||||||||||||
seq2  ACTCTTAGCTTTTTCAGTTCCCTTTAAAGGAATTC  1083