BAC Information

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BAC

Clone NameB6Ng01-153D02
Chromosome18 (Build37)
Map Location 28,731,703 - 28,872,196
singlet/doubletdoublet
Overlap geneBC051408
Upstream geneEG665646, EG271505, EG625997
Downstream geneLOC100040930, 4930578E11Rik, LOC666073
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-153D02.bB6Ng01-153D02.g
ACCDH948574DH948575
length1,111974
definitionDH948574|Mus musculus domesticus DNA, BAC clone: B6Ng01-153D02, 5' end.DH948575|Mus musculus domesticus DNA, BAC clone: B6Ng01-153D02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,871,106 - 28,872,196)(28,731,703 - 28,732,563)
sequence
gaattccaccttcatgggacagaaggtgttcaatcatatctcctgggccc
ccggctcctgtcgaagttacttcctccacaggtcccccaggaaaggtgtg
tggctatcagtcacataggaacagaaccaaaccttcccacatgcaaataa
ggtttcgcccaagctctcagtccaagccaatgagaggtacctgttgtcga
accctgaatcaccccaaaactgtctataaattctattcagggaattaaag
ttgtgggagacctactgagtcttttgttccaagagctgtaacaattggga
agggatctctcccgaagctccaactgaggttccactctagtcctcactga
agagttgctttcccgtcagtccagcctgaccggactcagtgcaaagctgc
gcagttaccgagtgacctggaaggcatggtagagacttcgtctccctgcc
aatactagcttcccttcgccaaaactctcacaccaggcctggcaaaagat
ctccttgggaaacctctggtacccggcccaaagtgactaaaatggaagag
cttgttttcttttgggtgctgagttgcagctttggaagacatatattcta
gtgttgtgttccctcatttgaggtcttccacacatgttttttcgatattt
atggagagacattcactttattagtctcttctttgatgttctattcaagg
aatagtaatcacatcctatatcacaagatattcccccaatttataagtgt
ttagttcatcttatacttaaattctgacttgcttataataaattttattt
gttaattggtccaaatctttttctttgaccaatgattatttcccccagaa
ttacatggtgagttactttgctttcctcgactggtaatcttggtttcctt
gtgaaaagtcatttgtccatgggtgaagaatttagtgactggctgtctga
cctattcttgagatcacaaacatggcttcatgtcatatcacactgtttga
ctactctgattctgtagtacatcttaaatctgttatttctcaaatgcact
gaaataagattgttgatttgtgtccagtttacaatagatatttcctatcc
actctggaata
gaattctttgcaggaaatacataaacaggtcacttcttgtggaacattta
attacctgtgacatactcctgggttctcttctctattacagaatcaaaga
gtgagacaatcaagcctctatcacatgttcaaagagggaaaaattgttag
attcttggactttctgatgaaaaaaagatagccattgttggactagcctg
accacaggacaggctctctaagacattcccttttaatatatgttccgttt
catccaatttttatataattatattctgttgtattatatgcctagatgca
ccatttctaagagaagcattttaaattggaaggataaaatagactaagag
agattgacagaaagtttcccaatctgttggtgacttttttgtcttattga
cagtgtcttttgccttacagaagctttgcaattttatgaggttccatttg
tcaatgctcaatcttacagcacaagccattgctgttctattcaggatttt
ttcccctgtgcccatatcttctagacttttccccactttctcctctataa
gtttcagtgtctctggttttatgtggagttccttgatccacttagacctg
accttagtacaaggagatgagaatgaatcaattcgcattcttctacatga
taaccgccagttgtgccagcaccatttgttgaaaatgctgtctttttttc
cacatgatggttttagctcccttgtcaaagatcaagtgacaataggtgtg
tgggttcagttctgggtcttcaattctattccattgatctacttgttctg
ttgctataccattaccatgcagtttttttttttaatcacaattactatgt
agaaacatctttatttttatttatttattttcttttattgggtattttat
tcatttacattttccatgctatcccaaaagtcgcccacacgctccccatc
cactcccccaccacttccattttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_28871106_28872196
seq2: B6Ng01-153D02.b_79_1156 (reverse)

seq1  TATTTCAGAGTGAGATAGGAAATATCTATTGTAAACTTGGAACACAATAT  50
      |||| ||||||| ||||||||||||||||||||||||  | |||||| ||
seq2  TATTCCAGAGTG-GATAGGAAATATCTATTGTAAACT--GGACACAA-AT  46

seq1  CAAACAATACTGTATATCAGTGCAATTTTGAGAAAATAACAGAATTTAAG  100
      | |||||| || ||| ||||||||  |||||| ||||||||| |||||||
seq2  C-AACAAT-CT-TATTTCAGTGCA--TTTGAG-AAATAACAG-ATTTAAG  89

seq1  ATGTACTACAGAATCAGAGTAGTCAAAACAGTGTGATAATGACATGAAGC  150
      |||||||||||||||||||||||| |||||||||||| ||||||||||||
seq2  ATGTACTACAGAATCAGAGTAGTC-AAACAGTGTGAT-ATGACATGAAGC  137

seq1  CATGTTTGTGGATCTCAAGAATAGGTCAGACAGCCAGTCACTAAATTCTT  200
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTGT-GATCTCAAGAATAGGTCAGACAGCCAGTCACTAAATTCTT  186

seq1  CACCCATGGACAAATGACTTTTCACAAGGAAACCAAGATTACCAGTCGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCATGGACAAATGACTTTTCACAAGGAAACCAAGATTACCAGTCGAG  236

seq1  GAAAGCAAAGTAACTCACCATGTAATTCTGGGGGAAATAATCATTGGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCAAAGTAACTCACCATGTAATTCTGGGGGAAATAATCATTGGTCA  286

seq1  AAG-AAAAGATTTGGACCAATTAACAAATAAAATTTATTATAAGCAAGTC  349
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAAGATTTGGACCAATTAACAAATAAAATTTATTATAAGCAAGTC  336

seq1  AGAATTTAAGTATAAGATGAACTAAACACTTATAAATTGGGGGAATATCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTAAGTATAAGATGAACTAAACACTTATAAATTGGGGGAATATCT  386

seq1  TGTGATATAGGATGTGATTACTATTCCTTGAATAGAACATCAAAGAAGAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATATAGGATGTGATTACTATTCCTTGAATAGAACATCAAAGAAGAG  436

seq1  ACTAATAAAGTGAATGTCTCTCCATAAATATCGAAAAAACATGTGTGGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATAAAGTGAATGTCTCTCCATAAATATCGAAAAAACATGTGTGGAA  486

seq1  GACCTCAAATGAGGGAACACAACACTAGAATATATGTCTTCCAAAGCTGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCAAATGAGGGAACACAACACTAGAATATATGTCTTCCAAAGCTGC  536

seq1  AACTCAGCACCCAAAAGAAAACAAGCTCTTCCATTTTAGTCACTTTGGGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGCACCCAAAAGAAAACAAGCTCTTCCATTTTAGTCACTTTGGGC  586

seq1  CGGGTACCAGAGGTTTCCCAAGGAGATCTTTTGCCAGGCCTGGTGTGAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTACCAGAGGTTTCCCAAGGAGATCTTTTGCCAGGCCTGGTGTGAGA  636

seq1  GTTTTGGCGAAGGGAAGCTAGTATTGGCAGGGAGACGAAGTCTCTACCAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGGCGAAGGGAAGCTAGTATTGGCAGGGAGACGAAGTCTCTACCAT  686

seq1  GCCTTCCAGGTCACTCGGTAACTGCGCAGCTTTGCACTGAGTCCGGTCAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCCAGGTCACTCGGTAACTGCGCAGCTTTGCACTGAGTCCGGTCAG  736

seq1  GCTGGACTGACGGGAAAGCAACTCTTCAGTGAGGACTAGAGTGGAACCTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGACTGACGGGAAAGCAACTCTTCAGTGAGGACTAGAGTGGAACCTC  786

seq1  AGTTGGAGCTTCGGGAGAGATCCCTTCCCAATTGTTACAGCTCTTGGAAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGAGCTTCGGGAGAGATCCCTTCCCAATTGTTACAGCTCTTGGAAC  836

seq1  AAAAGACTCAGTAGGTCTCCCACAACTTTAATTCCCTGAATAGAATTTAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACTCAGTAGGTCTCCCACAACTTTAATTCCCTGAATAGAATTTAT  886

seq1  AGACAGTTTTGGGGTGATTCAGGGTTCGACAACAGGTACCTCTCATTGGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGTTTTGGGGTGATTCAGGGTTCGACAACAGGTACCTCTCATTGGC  936

seq1  TTGGACTGAGAGCTTGGGCGAAACCTTATTTGCATGTGGGAAGGTTTGGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACTGAGAGCTTGGGCGAAACCTTATTTGCATGTGGGAAGGTTTGGT  986

seq1  TCTGTTCCTATGTGACTGATAGCCACACACCTTTCCTGGGGGACCTGTGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCCTATGTGACTGATAGCCACACACCTTTCCTGGGGGACCTGTGG  1036

seq1  AGGAAGTAACTTCGACAGGAGCCGGGGGCCCAGGAGATATGA  1091
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGTAACTTCGACAGGAGCCGGGGGCCCAGGAGATATGA  1078

seq1: chr18_28731703_28732563
seq2: B6Ng01-153D02.g_69_932

seq1  GAATTCTTTGCTGGAAATACATAAACAGGTCACTTCTTGTGGAACATTTA  50
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGCAGGAAATACATAAACAGGTCACTTCTTGTGGAACATTTA  50

seq1  ATTACCTGTGACATACTCCTGGGTTCTCTTCTCTATTACAGAATCAAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCTGTGACATACTCCTGGGTTCTCTTCTCTATTACAGAATCAAAGA  100

seq1  GTGAGACAATCAAGCCTCTATCACATGTTCAAAGAGGGAAAAATTGTTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGACAATCAAGCCTCTATCACATGTTCAAAGAGGGAAAAATTGTTAG  150

seq1  ATTCTTGGACTTTCTGATGAAAAAAAGATAGCCATTGTTGGACTAGCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGGACTTTCTGATGAAAAAAAGATAGCCATTGTTGGACTAGCCTG  200

seq1  ACCACAGGACAGGCTCTCTAAGACATTCCCTTTTAATATATGTTCCGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGGACAGGCTCTCTAAGACATTCCCTTTTAATATATGTTCCGTTT  250

seq1  CATCCAATTTTTATATAATTATATTCTGTTGTATTATATGCCTAGATGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAATTTTTATATAATTATATTCTGTTGTATTATATGCCTAGATGCA  300

seq1  CCATTTCTAAGAGAAGCATTTTAAATTGGAAGGATAAAATAGACTAAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCTAAGAGAAGCATTTTAAATTGGAAGGATAAAATAGACTAAGAG  350

seq1  AGATTGACAGAAAGTTTCCCAATCTGTTGGTGACTTTTTTGTCTTATTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGACAGAAAGTTTCCCAATCTGTTGGTGACTTTTTTGTCTTATTGA  400

seq1  CAGTGTCTTTTGCCTTACAGAAGCTTTGCAATTTTATGAGGTTCCATTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCTTTTGCCTTACAGAAGCTTTGCAATTTTATGAGGTTCCATTTG  450

seq1  TCAATGCTCAATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGCTCAATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGATTTT  500

seq1  TTCCCCTGTGCCCATATCTTCTAGACTTTTCCCCACTTTCTCCTCTATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTGTGCCCATATCTTCTAGACTTTTCCCCACTTTCTCCTCTATAA  550

seq1  GTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTGATCCACTTAGACCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTGATCCACTTAGACCTG  600

seq1  ACCTTAGTACAAGGAGATGAGAATGAATCAATTCGCATTCTTCTACATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTAGTACAAGGAGATGAGAATGAATCAATTCGCATTCTTCTACATGA  650

seq1  TAACCGCCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCTTTTTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCGCCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCTTTTTTTC  700

seq1  CACATGATGGTTTTAGCTCCCTTGTCAAAGATCAAGTGACAATAGGTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGATGGTTTTAGCTCCCTTGTCAAAGATCAAGTGACAATAGGTGTG  750

seq1  TGGGTTCAGTTCTGGGTCTTCAATTCTATTCCATTGATCTACTTG-TCTG  799
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGGGTTCAGTTCTGGGTCTTCAATTCTATTCCATTGATCTACTTGTTCTG  800

seq1  TTGCTATACCATTACCATGCAG-TTTTTTTTTTAATCACAATTACTATGT  848
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTGCTATACCATTACCATGCAGTTTTTTTTTTTAATCACAATTACTATGT  850

seq1  AG-AACATCTTTAT  861
      || |||||||||||
seq2  AGAAACATCTTTAT  864