BAC Information

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BAC

Clone NameB6Ng01-153M17
Chromosome18 (Build37)
Map Location 58,612,711 - 58,718,017
singlet/doubletdoublet
Overlap geneSlc27a6
Upstream gene1700011I03Rik, 4930511M06Rik, 2210409D07Rik, Slc12a2, 9330166H04Rik, Fbn2
Downstream geneIsoc1, Adamts19, A730017C20Rik, 4833446K15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-153M17.bB6Ng01-153M17.g
ACCDH949006DH949007
length1,1131,135
definitionDH949006|Mus musculus domesticus DNA, BAC clone: B6Ng01-153M17, 5' end.DH949007|Mus musculus domesticus DNA, BAC clone: B6Ng01-153M17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,716,904 - 58,718,017)(58,612,711 - 58,613,906)
sequence
gaattcacagtcgctacctgatgtgtagtgatgtaagccatgaataaaag
ccagagtatgtccacagataataaacactgcttatttttctgccacattc
acagctctagtcattgatcaacactgtttagccacactgtcaaaattctg
catgattcattgatcctactccttaccacaggtcactgaagcctcagtgt
acaaacacacctctttacaaagtgaaatggaacatagggcagaggaaatc
accagacagcactcgagggacactcttggcttctctgttcctatgcccct
aaactagctgaaacctgtgcttgacaataaacatttcgacttgactgaat
cacaagataggttggaaggacacagagatgtaggaagaatgacggtgttg
acggccagcccttcttgtgcctacagctatgtgtgaatatgtgagaaaag
caaacaggaaatgtctacctttttagtcatcaataaagcagaaattagat
tatgttccatactctcacgggattctgaaatcctatatgaagaactggta
tgtatcaattaatctaagatacctaagtaattttaccaagctctttacca
gggacatctgcatgacatttttagctctgtgcagaagaaatgatctaaac
cttttagattgtaccaagttactatcatggtagctatttcagtttattga
gcaacccacctccctggttccttagttaattactcattgaaatcagagat
ttatgtttttcattgtgaatatgtgtatagtagatatctcaactcacatc
agggaaggaagaacgtaactgaaagaaaatgaagggggaataaaacaagg
gaaaagattattgtctgtcacgagcctgctcctgactgatgggcagccag
ccttgctctgtcaaatcctagcctgcagagtatgtaatttaagtgcagga
atggatttaagaaatgtgtgaatcccgctttaattgtctgttatccaatg
cattcaatctcaaaaaagttactatgggaaaaaaaaaaaacggtaaaaca
tgatagagctttctttatcaggagacatttgtcaaggctgtaggaaatac
agaatacgccctg
gaattccaatgaacagtgaaacatctggagggattttaaaaataccaact
cccgagccatacccagaattgtggattcagcctctagtggaggacagaga
gacaattatttctaaaattatctcagtcattattaaaagtcactaggata
gcctcctaaagattccctcctttttaatcttttcaagtaaaatgcaacca
taaataattacctgtttttcttctgagtaagcaagaagagttatctagca
tctagtcagtatctaaagcatggaaagcaggttatacacaaaacatcgag
aaggaaactgactcacggtgtcaggattcatagccctgggcacatgccct
gctctggctgtaataaatagcatgaccaaaagcaacttggggaaaaatgg
tttacttcatcttacactttgcagtccatcacctagaagcaaaaacagaa
agccagaggcaggaactgaagcagagaccatggcttcttactgttttgcc
cccaggctctgattccactgcctctcttacacagtccagggccacctgtc
tagggacagtaccgtccactctctggggtatcctacatcaatcagtaatc
gaaagaattccctacagacatgcccagacgtcaatctcatggagacacaa
tacaatccctgcgtcccttttcccaggctcctcaggttgacaagtcatgc
taagcaagataggtatcataatgcaaactcttttcagcacgaggatgaga
gaatccagtggatcatcccagcactgttttcccctgtgtgcaaccattgt
ctcacggagctcgtgcttcgagatcattctctgcatttctcaggagctta
acgcccctcactgacccactacttaatcgatttgtttatgatgtcaaact
tctagattctgttcaaattattgtcaattcatacttccatcgtgccttgc
aagaattgttttgacattcccactttgtatgtgacaatatgtttaagtcc
tctgacataattttatgttggaattaacttcatgcttcatgttacctaca
tgtatttgtcctaggtcgactgtaaagacttttttaattggcgactgtgt
atgacactattcatcgagacgcctctataagaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_58716904_58718017
seq2: B6Ng01-153M17.b_46_1158 (reverse)

seq1  CAGGGCTGATTCTGTTATTTCAT-CAGCCTTGACAAATGTCTCATGAATA  49
      ||||||  |||||| |||||| | ||||||||||||||||||| |||  |
seq2  CAGGGCGTATTCTG-TATTTCCTACAGCCTTGACAAATGTCTCCTGATAA  49

seq1  AGAAAG--CTATCAAGTTTTTACGTGTTTTTTTTTTCCCATAGTAACTTT  97
      ||||||  |||||| |||||  ||| ||||||||||||||||||||||||
seq2  AGAAAGCTCTATCATGTTTTACCGTTTTTTTTTTTTCCCATAGTAACTTT  99

seq1  ATGGAGAATGAATGCATTTGGATAACAGAACATTTAAAGGCGAGATTCAC  147
       | |||| |||||||| ||||||||||| ||| ||||| ||| |||||||
seq2  TTTGAGATTGAATGCA-TTGGATAACAG-ACAATTAAA-GCGGGATTCAC  146

seq1  ACA-TTCTTATATCCATTCCTGCACTT-AATTACATACTCTGCAGGCTAG  195
      ||| |||||| |||||||||||||||| ||||||||||||||||||||||
seq2  ACATTTCTTAAATCCATTCCTGCACTTAAATTACATACTCTGCAGGCTAG  196

seq1  GATTTGACAGAGCAAGGCTGGGCTGCCCATCAGTCAGGAGCAGGCTCGTG  245
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GATTTGACAGAGCAAGGCT-GGCTGCCCATCAGTCAGGAGCAGGCTCGTG  245

seq1  ACAGACAATAATCTTTTCCCTTGTTTTATTCCCCCTTCATTTTCTTTCAG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAATAATCTTTTCCCTTGTTTTATTCCCCCTTCATTTTCTTTCAG  295

seq1  TTACGTTCTTCCTTCCCTGATGTGAGTTGAGATATCTACTATTACACATA  345
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTACGTTCTTCCTTCCCTGATGTGAGTTGAGATATCTACTA-TACACATA  344

seq1  TTCACAATGAAAAACATAAATCTCTGATTTCAATGAGTAATTAACTAAGG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAATGAAAAACATAAATCTCTGATTTCAATGAGTAATTAACTAAGG  394

seq1  AACCAGGGAGGTGGGTTGCTCAATAAACTGAAATAGCTACCATGATAGTA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGGGAGGTGGGTTGCTCAATAAACTGAAATAGCTACCATGATAGTA  444

seq1  ACTTGGTACAATCTAAAAGGTTTAGATCATTTCTTCTGCACAGAGCTAAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGTACAATCTAAAAGGTTTAGATCATTTCTTCTGCACAGAGCTAAA  494

seq1  AATGTCATGCAGATGTCCCTGGTAAAGAGCTTGGTAAAATTACTTAGGTA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCATGCAGATGTCCCTGGTAAAGAGCTTGGTAAAATTACTTAGGTA  544

seq1  TCTTAGATTAATTGATACATACCAGTTCTTCATATAGGATTTCAGAATCC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGATTAATTGATACATACCAGTTCTTCATATAGGATTTCAGAATCC  594

seq1  CGTGAGAGTATGGAACATAATCTAATTTCTGCTTTATTGATGACTAAAAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAGAGTATGGAACATAATCTAATTTCTGCTTTATTGATGACTAAAAA  644

seq1  GGTAGACATTTCCTGTTTGCTTTTCTCACATATTCACACATAGCTGTAGG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGACATTTCCTGTTTGCTTTTCTCACATATTCACACATAGCTGTAGG  694

seq1  CACAAGAAGGGCTGGCCGTCAACACCGTCATTCTTCCTACATCTCTGTGT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGAAGGGCTGGCCGTCAACACCGTCATTCTTCCTACATCTCTGTGT  744

seq1  CCTTCCAACCTATCTTGTGATTCAGTCAAGTCGAAATGTTTATTGTCAAG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCAACCTATCTTGTGATTCAGTCAAGTCGAAATGTTTATTGTCAAG  794

seq1  CACAGGTTTCAGCTAGTTTAGGGGCATAGGAACAGAGAAGCCAAGAGTGT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGTTTCAGCTAGTTTAGGGGCATAGGAACAGAGAAGCCAAGAGTGT  844

seq1  CCCTCGAGTGCTGTCTGGTGATTTCCTCTGCCCTATGTTCCATTTCACTT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCGAGTGCTGTCTGGTGATTTCCTCTGCCCTATGTTCCATTTCACTT  894

seq1  TGTAAAGAGGTGTGTTTGTACACTGAGGCTTCAGTGACCTGTGGTAAGGA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAGAGGTGTGTTTGTACACTGAGGCTTCAGTGACCTGTGGTAAGGA  944

seq1  GTAGGATCAATGAATCATGCAGAATTTTGACAGTGTGGCTAAACAGTGTT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGATCAATGAATCATGCAGAATTTTGACAGTGTGGCTAAACAGTGTT  994

seq1  GATCAATGACTAGAGCTGTGAATGTGGCAGAAAAATAAGCAGTGTTTATT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAATGACTAGAGCTGTGAATGTGGCAGAAAAATAAGCAGTGTTTATT  1044

seq1  ATCTGTGGACATACTCTGGCTTTTATTCATGGCTTACATCACTACACATC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGGACATACTCTGGCTTTTATTCATGGCTTACATCACTACACATC  1094

seq1  AGGTAGCGACTGTGAATTC  1114
      |||||||||||||||||||
seq2  AGGTAGCGACTGTGAATTC  1113

seq1: chr18_58612711_58613906
seq2: B6Ng01-153M17.g_70_1204

seq1  GAATTCCAATGAACAGTGAAACATCTGGAGGGATTTTAAAAATACCAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATGAACAGTGAAACATCTGGAGGGATTTTAAAAATACCAACT  50

seq1  CCCGAGCCATACCCAGAATTGTGGATTCAGCCTCTAGTGGAGGACAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGAGCCATACCCAGAATTGTGGATTCAGCCTCTAGTGGAGGACAGAGA  100

seq1  GACAATTATTTCTAAAATTATCTCAGTCATTATTAAAAGTCACTAGGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATTATTTCTAAAATTATCTCAGTCATTATTAAAAGTCACTAGGATA  150

seq1  GCCTCCTAAAGATTCCCTCCTTTTTAATCTTTTCAAGTAAAATGCAACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCTAAAGATTCCCTCCTTTTTAATCTTTTCAAGTAAAATGCAACCA  200

seq1  TAAATAATTACCTGTTTTTCTTCTGAGTAAGCAAGAAGAGTTATCTAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAATTACCTGTTTTTCTTCTGAGTAAGCAAGAAGAGTTATCTAGCA  250

seq1  TCTAGTCAGTATCTAAAGCATGGAAAGCAGGTTATACACAAAACATCGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTCAGTATCTAAAGCATGGAAAGCAGGTTATACACAAAACATCGAG  300

seq1  AAGGAAACTGACTCACGGTGTCAGGATTCATAGCCCTGGGCACATGCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAACTGACTCACGGTGTCAGGATTCATAGCCCTGGGCACATGCCCT  350

seq1  GCTCTGGCTGTAATAAATAGCATGACCAAAAGCAACTTGGGGAAAAATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGGCTGTAATAAATAGCATGACCAAAAGCAACTTGGGGAAAAATGG  400

seq1  TTTACTTCATCTTACACTTTGCAGTCCATCACCTAGAAGCAAAAACAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTCATCTTACACTTTGCAGTCCATCACCTAGAAGCAAAAACAGAA  450

seq1  AGCCAGAGGCAGGAACTGAAGCAGAGACCATGGCTTCTTACTGTTTTGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGAGGCAGGAACTGAAGCAGAGACCATGGCTTCTTACTGTTTTGCC  500

seq1  CCCAGGCTCTGATTCCACTGCCTCTCTTACACAGTCCAGGGCCACCTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGCTCTGATTCCACTGCCTCTCTTACACAGTCCAGGGCCACCTGTC  550

seq1  TAGGGACAGTACCGTCCACTCTCTGGGGTATCCTACATCAATCAGTAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGACAGTACCGTCCACTCTCTGGGGTATCCTACATCAATCAGTAATC  600

seq1  GAAAGAATTCCCTACAGACATGCCCAGACGTCAATCTCATGGAGACACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAATTCCCTACAGACATGCCCAGACGTCAATCTCATGGAGACACAA  650

seq1  TACAATCCCTGCGTCCCTTTTCCCAGGCTCCTCAGGTTGACAAGTCATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATCCCTGCGTCCCTTTTCCCAGGCTCCTCAGGTTGACAAGTCATGC  700

seq1  TAAGCAAGATAGGTATCATAATGCAAACTC-TTTCAGCACGAGGATGAGA  749
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TAAGCAAGATAGGTATCATAATGCAAACTCTTTTCAGCACGAGGATGAGA  750

seq1  GAATCCAGTGGATCATCCCAGCACTGTTTTCCCCTGTGTGCAACCATTGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCAGTGGATCATCCCAGCACTGTTTTCCCCTGTGTGCAACCATTGT  800

seq1  CTCACGGAGCTCGTGCTTCGAGATCA-TCTCTGCA-TTCTCAGGAGCTTA  847
      |||||||||||||||||||||||||| |||||||| ||||||||||||||
seq2  CTCACGGAGCTCGTGCTTCGAGATCATTCTCTGCATTTCTCAGGAGCTTA  850

seq1  ACGCCCCTCACTGACCCACTAC-TAATCGATTTGTTTATGATGTCAAACT  896
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ACGCCCCTCACTGACCCACTACTTAATCGATTTGTTTATGATGTCAAACT  900

seq1  TCTAGATTCTGTTCAAATTATTGTCAATTCATAC-TCCATCGTGCCTTGC  945
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TCTAGATTCTGTTCAAATTATTGTCAATTCATACTTCCATCGTGCCTTGC  950

seq1  AAGAATTGTTTTGGACATTCCCACTTTGTATGTGACAATATGTTTAA-TT  994
      |||||||||||| |||||||||||||||||||||||||||||||||| | 
seq2  AAGAATTGTTTT-GACATTCCCACTTTGTATGTGACAATATGTTTAAGTC  999

seq1  CTCTGACATAATTTTAATGTGGAATTAACTTCAGTGCTTATTGTTAACAT  1044
      ||||||||||||||||   |||||||||||||| |||||  ||||| |  
seq2  CTCTGACATAATTTTATGTTGGAATTAACTTCA-TGCTTCATGTTACCTA  1048

seq1  CATGTATATTGTC--ATGTCCAGCTTAAAGACTTTTTTAATTTGGCATCT  1092
      ||||||| |||||  | ||| |   ||||||||||||||| |||||  ||
seq2  CATGTAT-TTGTCCTAGGTCGACTGTAAAGACTTTTTTAA-TTGGCGACT  1096

seq1  -TGTATGAC-CTATATCACTGAGA--GCTCTCTAAGAAAGGAGTATATAG  1138
       |||||||| |||| |||  ||||   |||| ||||||||          
seq2  GTGTATGACACTAT-TCATCGAGACGCCTCTATAAGAAAG----------  1135

seq1  GTTAGGCATATATGTCTCCAGATTCTCATTTTCCTGAGAATGTCTTTATA  1188
                                                        
seq2  --------------------------------------------------  1135

seq1  TAAGAAAG  1196
              
seq2  --------  1135