BAC Information

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BAC

Clone NameB6Ng01-153P13
Chromosome18 (Build37)
Map Location 89,074,922 - 89,166,650
singlet/doubletdoublet
Overlap geneRttn
Upstream geneLOC100039961, LOC100039972, LOC623177, LOC665497, LOC100040003, LOC623208, Socs6
Downstream geneCd226, Dok6, LOC383320
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-153P13.bB6Ng01-153P13.g
ACCDH949137DH949138
length1,179974
definitionDH949137|Mus musculus domesticus DNA, BAC clone: B6Ng01-153P13, 5' end.DH949138|Mus musculus domesticus DNA, BAC clone: B6Ng01-153P13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,165,485 - 89,166,650)(89,074,922 - 89,075,896)
sequence
gaattccacgaatttgagtttggtgtagtgaaacactttgtagtcactgt
tgctcttcctacactgaaatagtccctgggcttccagctaacctaccaag
atctatgtttaggacttcctttcccaggtacagaagtagtcagaggcagt
gggctctcttgtgctcaggcttgatctctggcaacagcaagctactcttg
accttgagataaagcaggacaacccagccaatctcctccccaccctaggc
ccttgtctttgaggctaggatcagaggaggcatatgcctccaggctggga
actacctcaggaaacagtgctggtctttcctcttggtggacaaagccagc
agcagctgttagtagtagggctcttgcaagcagccctgagaaggggcctg
ctggaagggaaggatctagtatctagcaagataatcaatcacccaggcca
gaggcctggtttgagatcacacagaagtgccactgaaccagaagtcaagc
tgcatcaaaagcatttaagaagcaaaaaagagggagttgtgagaaatgga
ggaagccttgggcaaatgtgtgaggggcagataacttcctgaatatttat
tattgacaggagcggagccatgtctaggaccccagtgcctcaactacact
gagactggcaaagccttttccaggggaaactcaaagagaacttgcaaagc
cttcctctgatctggtgcaatgtatccagaacttatcaagcatggtttcc
tcttccagtatgactacaacctgagattgctcccttacagagactgtggt
gataggaatgagaatggttcccagaagctcatatacttatagatctcagg
ttggtggactgtttaggaaagataagaaggtgtggccttgtagaagaagt
tgtgcctctgggggttggggtgcaaagatttcaaaatgccatgccaagtc
aaattcagtctgtctatctcctccatctatctatctgtctctgtttctct
gtttgtctctgtttctctgactgcggctggtgatcagatattaagctctc
agctacttcttcaatgccatgccgtgcttgctggcatacccctaaccaaa
aacagcattgactctccccccttggaaacgtgaagcaaagcccccaaaat
aactgcgcttttcttgtttaagcctgcct
gaattccaaacagtcttcagggataacctttgttctctctggtagaaaga
gcagaagtacctcttttatcttgttttgcaaagttgtgtgctacttttag
aaaagtagaaaaaagaagatggcttttctgaatttgagtcattccagtta
cctccagagcaaccaccctttttatttacatgtaacacagtctgataccc
ggcagtacagacacttatattggagtagttcttttgtgattttatattca
gactcttctgaatgaagctaaacaacagataatggaaaagccctcatctg
attggaacctaggattatctaaacatcactgtaagaggaagggctttgaa
ataatgtgatagcatgttgtcagcctcagaagactacaggctagagatac
agctccatactactgcctgcagcagccctgagagtttgttacagagacct
ccactcagacagagctgggattctttgctataaaaaagaattttggaact
gccattttgaagcagagttggggttgaataagatgaaagattttaagttc
gggatcaagaaaaaaagatggtgtccacccaagtgacagtgtgcatttct
caagagtgtcatactcaagtgattcagcaatagtgtacatgtgtgtgtat
aaactacaaaaatactcatatatatgtaaatatatatatatatatacata
cgtatatatacacatattttctttgtagattctaaagttgtatctcaaca
tgttgtaactaacctttttttctttttaccccacctcttcttagtaaatg
agatcataggatggttctttggtgctttggacaggattacaacctgatca
aggtaaagacatggatcacaaaggtcacacgaggggagtttaagatatct
tgtttacttgacattctcgtgatatttctagaaagtaagtttttatagca
gagggaggggaggaaaaaagccac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_89165485_89166650
seq2: B6Ng01-153P13.b_48_1226 (reverse)

seq1  AGGCA-GCTTAAACAAGAAA---GCAGTTAATCTGGGG--CTTGCTTACA  44
      ||||| ||||||||||||||   ||||||| | |||||   ||||||   
seq2  AGGCAGGCTTAAACAAGAAAAGCGCAGTTATTTTGGGGGCTTTGCTTCAC  50

seq1  GTTTCAGAGGGG---GAGTCAATGACTG-TTATGGTAGAGAGTATGGCAG  90
      |||||  |||||   ||||||||| ||| || ||||   | ||||| |||
seq2  GTTTCCAAGGGGGGAGAGTCAATG-CTGTTTTTGGTTAGGGGTATGCCAG  99

seq1  CAGGCA-GGCATGGCAATGGAGAAGTAGCTGAGAGCTT-ATATCTGATCC  138
      || ||| ||||||||| || |||||||||||||||||| ||||||||| |
seq2  CAAGCACGGCATGGCATTGAAGAAGTAGCTGAGAGCTTAATATCTGAT-C  148

seq1  ACCAGCAGCAGTCAGAGAGACAGAGACAAACAGAGAAACAGAGACAGATA  188
      |||||| ||||||||||| |||||||||||||||||||||||||||||||
seq2  ACCAGCCGCAGTCAGAGAAACAGAGACAAACAGAGAAACAGAGACAGATA  198

seq1  GATAGATGGA-GAGATAGACAGACTGAATTTGACTTGGCATGGCATTTTG  237
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GATAGATGGAGGAGATAGACAGACTGAATTTGACTTGGCATGGCATTTTG  248

seq1  AAATCTTTGCACCCC-ACCCCCAGAGGCACACTTCCTTCTACAAGGCCAC  286
      ||||||||||||||| |||||||||||||||  | |||||||||||||||
seq2  AAATCTTTGCACCCCAACCCCCAGAGGCACAACTTCTTCTACAAGGCCAC  298

seq1  ACCTTCTTATCTTTCCTAAACAGTCCACCAACCTG-GATCTATAAGTATA  335
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ACCTTCTTATCTTTCCTAAACAGTCCACCAACCTGAGATCTATAAGTATA  348

seq1  TGAGCTTCTGGGGACCATTCTCATTCCTATCACCACAGTCTCTGTAAGGG  385
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGAGCTTCTGGGAACCATTCTCATTCCTATCACCACAGTCTCTGTAAGGG  398

seq1  AGCAATCTCAGGTTGTAGTCATACTGGAAGAGGAAACCATGCTTGATAAG  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATCTCAGGTTGTAGTCATACTGGAAGAGGAAACCATGCTTGATAAG  448

seq1  TTCTGGATACATTGCACCAGATCAGAGGAAGGCTTTGCAAGTTCTCTTTG  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGATACATTGCACCAGATCAGAGGAAGGCTTTGCAAGTTCTCTTTG  498

seq1  AGTTTCCCCTGGAAAAGGCTTTGCCAGTCTCAGTGTAGTTGAGGCACTGG  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCCCCTGGAAAAGGCTTTGCCAGTCTCAGTGTAGTTGAGGCACTGG  548

seq1  GGTCCTAGACATGGCTCCGCTCCTGTCAATAATAAATATTCAGGAAGTTA  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTAGACATGGCTCCGCTCCTGTCAATAATAAATATTCAGGAAGTTA  598

seq1  TCTGCCCCTCACACATTTGCCCAAGGCTTCCTCCATTTCTCACAACTCCC  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCCCTCACACATTTGCCCAAGGCTTCCTCCATTTCTCACAACTCCC  648

seq1  TCTTTTTTGCTTCTTAAATGCTTTTGATGCAGCTTGACTTCTGGTTCAGT  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTGCTTCTTAAATGCTTTTGATGCAGCTTGACTTCTGGTTCAGT  698

seq1  GGCACTTCTGTGTGATCTCAAACCAGGCCTCTGGCCTGGGTGATTGATTA  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTTCTGTGTGATCTCAAACCAGGCCTCTGGCCTGGGTGATTGATTA  748

seq1  TCTTGCTAGATACTAGATCCTTCCCTTCCAGCAGGCCCCTTCTCAGGGCT  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTAGATACTAGATCCTTCCCTTCCAGCAGGCCCCTTCTCAGGGCT  798

seq1  GCTTGCAAGAGCCCTACTACTAACAGCTGCTGCTGGCTTTGTCCACCAAG  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCAAGAGCCCTACTACTAACAGCTGCTGCTGGCTTTGTCCACCAAG  848

seq1  AGGAAAGACCAGCACTGTTTCCTGAGGTAGTTCCCAGCCTGGAGGCATAT  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGACCAGCACTGTTTCCTGAGGTAGTTCCCAGCCTGGAGGCATAT  898

seq1  GCCTCCTCTGATCCTAGCCTCAAAGACAAGGGCCTAGGGTGGGGAGGAGA  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCTCTGATCCTAGCCTCAAAGACAAGGGCCTAGGGTGGGGAGGAGA  948

seq1  TTGGCTGGGTTGTCCTGCTTTATCTCAAGGTCAAGAGTAGCTTGCTGTTG  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTGGGTTGTCCTGCTTTATCTCAAGGTCAAGAGTAGCTTGCTGTTG  998

seq1  CCAGAGATCAAGCCTGAGCACAAGAGAGCCCACTGCCTCTGACTACTTCT  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGATCAAGCCTGAGCACAAGAGAGCCCACTGCCTCTGACTACTTCT  1048

seq1  GTACCTGGGAAAGGAAGTCCTAAACATAGATCTTGGTAGGTTAGCTGGAA  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTGGGAAAGGAAGTCCTAAACATAGATCTTGGTAGGTTAGCTGGAA  1098

seq1  GCCCAGGGACTATTTCAGTGTAGGAAGAGCAACAGTGACTACAAAGTGTT  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGGGACTATTTCAGTGTAGGAAGAGCAACAGTGACTACAAAGTGTT  1148

seq1  TCACTACACCAAACTCAAATTCGTGGAATTC  1166
      |||||||||||||||||||||||||||||||
seq2  TCACTACACCAAACTCAAATTCGTGGAATTC  1179

seq1: chr18_89074922_89075896
seq2: B6Ng01-153P13.g_69_1042

seq1  GAATTCCAAACAGTCTTCAGGGATAACCTTTGTTCTCTCTGGTAGAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAACAGTCTTCAGGGATAACCTTTGTTCTCTCTGGTAGAAAGA  50

seq1  GCAGAAGTACCTCTTTTATCTTGTTTTGCAAAGTTGTGTGCTACTTTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGTACCTCTTTTATCTTGTTTTGCAAAGTTGTGTGCTACTTTTAG  100

seq1  AAAAGTAGAAAAAAGAAGATGGCTTTTCTGAATTTGAGTCATTCCAGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTAGAAAAAAGAAGATGGCTTTTCTGAATTTGAGTCATTCCAGTTA  150

seq1  CCTCCAGAGCAACCACCCTTTTTATTTACATGTAACACAGTCTGATACCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGAGCAACCACCCTTTTTATTTACATGTAACACAGTCTGATACCC  200

seq1  GGCAGTACAGACACTTATATTGGAGTAGTTCTTTTGTGATTTTATATTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTACAGACACTTATATTGGAGTAGTTCTTTTGTGATTTTATATTCA  250

seq1  GACTCTTCTGAATGAAGCTAAACAACAGATAATGGAAAAGCCCTCATCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTTCTGAATGAAGCTAAACAACAGATAATGGAAAAGCCCTCATCTG  300

seq1  ATTGGAACCTAGGATTATCTAAACATCACTGTAAGAGGAAGGGCTTTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAACCTAGGATTATCTAAACATCACTGTAAGAGGAAGGGCTTTGAA  350

seq1  ATAATGTGATAGCATGTTGTCAGCCTCAGAAGACTACAGGCTAGAGATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGTGATAGCATGTTGTCAGCCTCAGAAGACTACAGGCTAGAGATAC  400

seq1  AGCTCCATACTACTGCCTGCAGCAGCCCTGAGAGTTTGTTACAGAGACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCATACTACTGCCTGCAGCAGCCCTGAGAGTTTGTTACAGAGACCT  450

seq1  CCACTCAGACAGAGCTGGGATTCTTTGCTATAAAAAAGAATTTTGGAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCAGACAGAGCTGGGATTCTTTGCTATAAAAAAGAATTTTGGAACT  500

seq1  GCCATTTTGAAGCAGAGTTGGGGTTGAATAAGATGAAAGATTTTAAGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTTTGAAGCAGAGTTGGGGTTGAATAAGATGAAAGATTTTAAGTTC  550

seq1  GGGATCAAGAAAAAAAGATGGTGTCCACCCAAGTGACAGTGTGCATTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCAAGAAAAAAAGATGGTGTCCACCCAAGTGACAGTGTGCATTTCT  600

seq1  CAAGAGTGTCATACTCAAGTGATTCAGCAATAGTGTACATGTGTGTGTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGTGTCATACTCAAGTGATTCAGCAATAGTGTACATGTGTGTGTAT  650

seq1  AAACTACAAAAATACTCATATATATGTAAATATATATATATATATACATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTACAAAAATACTCATATATATGTAAATATATATATATATATACATA  700

seq1  CGTATATATACACATA-TTTCTTTGTAGATTCTAAAGTTGTATCTCAACA  749
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CGTATATATACACATATTTTCTTTGTAGATTCTAAAGTTGTATCTCAACA  750

seq1  TGTTGTAACTAACCTTTTTTTCTTTTTACCCCACCTCTTCTTAGTAAATG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTAACTAACCTTTTTTTCTTTTTACCCCACCTCTTCTTAGTAAATG  800

seq1  AGATCATAGGATGGTTCTTTAGGTGCTTTGGACAGGATTACAACCTGATC  849
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGATCATAGGATGGTTCTTT-GGTGCTTTGGACAGGATTACAACCTGATC  849

seq1  AAGGTAAAGACATGGATCACAAAGGTCACACGA-GGGAGTTTAAGATATC  898
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAGGTAAAGACATGGATCACAAAGGTCACACGAGGGGAGTTTAAGATATC  899

seq1  TTGTTTACTTTGACATTCTCGTGATATTCCTAGAAAAGTAAGTTTTTATA  948
      |||||||| ||||||||||||||||||| |||| ||||||||||||||||
seq2  TTGTTTAC-TTGACATTCTCGTGATATTTCTAG-AAAGTAAGTTTTTATA  947

seq1  GCAGAGAGAGGAGAGGAGAAAAGCCAC  975
      |||||| |||| ||||| |||||||||
seq2  GCAGAGGGAGGGGAGGAAAAAAGCCAC  974