BAC Information

Click to search

BAC

Clone NameB6Ng01-153P24
Chromosome18 (Build37)
Map Location 12,355,049 - 12,543,356
singlet/doubletdoublet
Overlap geneNpc1, Ankrd29, Lama3
Upstream geneLOC665310, LOC100040148, Rbbp8, LOC621998, Cables1, 6030446N20Rik, Riok3, 3110002H16Rik
Downstream gene2810439F02Rik, Cabyr, LOC665356, Osbpl1a, LOC435556, Impact, Hrh4, EG383354, LOC665379
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-153P24.bB6Ng01-153P24.g
ACCDH949159DH949160
length8801,089
definitionDH949159|Mus musculus domesticus DNA, BAC clone: B6Ng01-153P24, 5' end.DH949160|Mus musculus domesticus DNA, BAC clone: B6Ng01-153P24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,542,413 - 12,543,356)(12,355,049 - 12,356,139)
sequence
gaattccccaagtgtggagtgtttgcaccagtggtagcttgggagctcac
tcttcagttagagagagaggtggagacaagaacacccttgtggcctatga
gcccaggaaataaatggttgcttacacacacacacacacacacacacaca
cacacacacacacacacacacacacaaacacacacacacacagtttctcc
tggaggaaaatgcaataggagaatgggaagtgagaagccagagagagaag
gacagatgtagaaatagggagagaagaggcactatgaaggggagagcaaa
aggaagaaggtccagaggcagaaaatgcatccagggtcacctggaggtca
gagacaggagcacaggctctgccagtgagggcaggatccacagaacgcag
ctgggagaggagaccccaggctcaactcctcaccagcacacagacttaac
tcaagctgtctcctgaacctccctgacgagatcctgaactctgcctttcc
tttatatacttccatatgtgtattcccttgtactctctcgccatggatag
taataaaacagcaatgatttaaagccaaaatggacttgaaagtttctcca
gagaaaagatacaagcttgttttcaagatttgctaagggataaaaatgct
cctttaaaaaactcaacttccatttgctggatattttctgattctgttgg
catttaaagatctcagaaggccacgctccttctggatgaaaaatcacgtt
gaaggcattctgggggagacaccaggacagctccaaaggtggctcttcca
tacatcccttaagtcctcccaggagccattgtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtgtgagagtgtgcac
gaattctttcccctgaggcctctgtttaccctctggagtcagaggtctgc
agcggacacaggttgggtccatcactgacaaaaaaaggagagccactcat
tagaaaaatgggcagcaagacttacaacagcaccaacaacaaacagtcaa
gacttaacacttaaggactgcgtgtttaagactaaacacttcccccctca
aatgcttcagctccatgtggtctcaataagcgacagactcaagccattca
tattaagcagactatataatatatagcaaacccctcctggacgtaggtgc
cctgttttgaggaacacctaagagcccaggactcacgtgttcacaaacac
agcacttaagcggccggagaaagcatgcctttgaacagagcccagttggc
actcttaaagcagtaagtgtgctctgcaccaatgagaagtctgaccgggg
accaagcccttggtgctctccttgcttgacgcagctctgagagtcacgtg
tgtgactgagcacaggacaatgacagagggaaggagacggctccaacact
gacaaacacgcacaaacgaagggaaagtgaaatggctaagtgatgctacc
atttttctgaaatgagaaagtctagaaaaggagatgaagtaccagaagca
ttgcagaactggtgagtgacgttgtagagtctgcagcaggacgactgtgg
cgagacccagtcaaagtagtcatcgatccaggacgagggggcgaagccta
ctcgggtgctggagagaggagagacagtaacaggcttgttgggactcttg
caaactctagttccttccctccacttgacactgctgctatactactgacc
aaaaccttcaagaaaacccatgggccaatgagcccactttgctcacaggg
aacttgctctacactttttgaaatgacacaaaaagcaaccttcccaaaag
aaaatctggttttagtgagaatttcaggcctgagtgttcctggccacgag
ttcctccttctaccctttctcttttctcatccttcattcctcccccactt
ctctcgagatttattatttattatgattatttatttatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_12542413_12543356
seq2: B6Ng01-153P24.b_49_928 (reverse)

seq1  GTGCACACTATGCATATGCACACCACACCCATAGGTGCATCCATTCATGT  50
                                                        
seq2  --------------------------------------------------  0

seq1  GCATACCATTACATTCACACACACACACACACACACACACACACACACAC  100
                   | ||||| | |||||||||||||||||||||||||||
seq2  ------------GTGCACACTCTCACACACACACACACACACACACACAC  38

seq1  ACACACACACACAACAATGGCTCCTGGGAGGACTTAAGGGATGTATGGAA  150
      ||||||||||   |||||||||||||||||||||||||||||||||||||
seq2  ACACACACAC---ACAATGGCTCCTGGGAGGACTTAAGGGATGTATGGAA  85

seq1  GAGCCACC-TTGGAGCTGTCCTGGTGTCTCCCCCAGAATGCCTTCAACCT  199
      |||||||| ||||||||||||||||||||||||||||||||||||||| |
seq2  GAGCCACCTTTGGAGCTGTCCTGGTGTCTCCCCCAGAATGCCTTCAACGT  135

seq1  GATTTTTCATCCAGAAGGAGCGTGGCCTTCTGAGATCTTTAAATGCCAAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTCATCCAGAAGGAGCGTGGCCTTCTGAGATCTTTAAATGCCAAC  185

seq1  AGAATCAGAAAATATCCAGCAAATGGAAGTTGAGTTTTTTAAAGGAGCAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCAGAAAATATCCAGCAAATGGAAGTTGAGTTTTTTAAAGGAGCAT  235

seq1  TTTTATCCCTTAGCAAATCTTGAAAACAAGCTTGTATCTTTTCTCTGGAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCCCTTAGCAAATCTTGAAAACAAGCTTGTATCTTTTCTCTGGAG  285

seq1  AAACTTTCAAGTCCATTTTGGCTTTAAATCATTGCTGTTTTATTACTATC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTCAAGTCCATTTTGGCTTTAAATCATTGCTGTTTTATTACTATC  335

seq1  CATGGCGAGAGAGTACAAGGGAATACACATATGGAAGTATATAAAGGAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCGAGAGAGTACAAGGGAATACACATATGGAAGTATATAAAGGAAA  385

seq1  GGCAGAGTTCAGGATCTCGTCAGGGAGGTTCAGGAGACAGCTTGAGTTAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGTTCAGGATCTCGTCAGGGAGGTTCAGGAGACAGCTTGAGTTAA  435

seq1  GTCTGTGTGCTGGTGAGGAGTTGAGCCTGGGGTCTCCTCTCCCAGCTGCG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGTGCTGGTGAGGAGTTGAGCCTGGGGTCTCCTCTCCCAGCTGCG  485

seq1  TTCTGTGGATCCTGCCCTCACTGGCAGAGCCTGTGCTCCTGTCTCTGACC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGGATCCTGCCCTCACTGGCAGAGCCTGTGCTCCTGTCTCTGACC  535

seq1  TCCAGGTGACCCTGGATGCATTTTCTGCCTCTGGACCTTCTTCCTTTTGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGTGACCCTGGATGCATTTTCTGCCTCTGGACCTTCTTCCTTTTGC  585

seq1  TCTCCCCTTCATAGTGCCTCTTCTCTCCCTATTTCTACATCTGTCCTTCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCTTCATAGTGCCTCTTCTCTCCCTATTTCTACATCTGTCCTTCT  635

seq1  CTCTCTGGCTTCTCACTTCCCATTCTCCTATTGCATTTTCCTCCAGGAGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGGCTTCTCACTTCCCATTCTCCTATTGCATTTTCCTCCAGGAGA  685

seq1  AACTGTGTGTGTGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTGTGTGTGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  735

seq1  GTGTGTGTGTGTGTGTGTGTGTAAGCAACCATTTATTTCCTGGGCTCATA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTAAGCAACCATTTATTTCCTGGGCTCATA  785

seq1  GGCCACAAGGGTGTTCTTGTCTCCACCTCTCTCTCTAACTGAAGAGTGAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACAAGGGTGTTCTTGTCTCCACCTCTCTCTCTAACTGAAGAGTGAG  835

seq1  CTCCCAAGCTACCACTGGTGCAAACACTCCACACTTGGGGAATTC  944
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAAGCTACCACTGGTGCAAACACTCCACACTTGGGGAATTC  880

seq1: chr18_12355049_12356139
seq2: B6Ng01-153P24.g_72_1160

seq1  GAATTCTTTCCCCTGAGGCCTCTGTTTACCCTCTGGAGTCAGAGGTCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCCCTGAGGCCTCTGTTTACCCTCTGGAGTCAGAGGTCTGC  50

seq1  AGCGGACACAGGTTGGGTCCATCACTGACAAAAAAAGGAGAGCCACTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGACACAGGTTGGGTCCATCACTGACAAAAAAAGGAGAGCCACTCAT  100

seq1  TAGAAAAATGGGCAGCAAGACTTACAACAGCACCAACAACAAACAGTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAATGGGCAGCAAGACTTACAACAGCACCAACAACAAACAGTCAA  150

seq1  GACTTAACACTTAAGGACTGCGTGTTTAAGACTAAACACTTCCCCCCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAACACTTAAGGACTGCGTGTTTAAGACTAAACACTTCCCCCCTCA  200

seq1  AATGCTTCAGCTCCATGTGGTCTCAATAAGCGACAGACTCAAGCCATTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTCAGCTCCATGTGGTCTCAATAAGCGACAGACTCAAGCCATTCA  250

seq1  TATTAAGCAGACTATATAATATATAGCAAACCCCTCCTGGACGTAGGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAGCAGACTATATAATATATAGCAAACCCCTCCTGGACGTAGGTGC  300

seq1  CCTGTTTTGAGGAACACCTAAGAGCCCAGGACTCACGTGTTCACAAACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTTGAGGAACACCTAAGAGCCCAGGACTCACGTGTTCACAAACAC  350

seq1  AGCACTTAAGCGGCCGGAGAAAGCATGCCTTTGAACAGAGCCCAGTTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTAAGCGGCCGGAGAAAGCATGCCTTTGAACAGAGCCCAGTTGGC  400

seq1  ACTCTTAAAGCAGTAAGTGTGCTCTGCACCAATGAGAAGTCTGACCGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTAAAGCAGTAAGTGTGCTCTGCACCAATGAGAAGTCTGACCGGGG  450

seq1  ACCAAGCCCTTGGTGCTCTCCTTGCTTGACGCAGCTCTGAGAGTCACGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGCCCTTGGTGCTCTCCTTGCTTGACGCAGCTCTGAGAGTCACGTG  500

seq1  TGTGACTGAGCACAGGACAATGACAGAGGGAAGGAGACGGCTCCAACACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTGAGCACAGGACAATGACAGAGGGAAGGAGACGGCTCCAACACT  550

seq1  GACAAACACGCACAAACGAAGGGAAAGTGAAATGGCTAAGTGATGCTACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAACACGCACAAACGAAGGGAAAGTGAAATGGCTAAGTGATGCTACC  600

seq1  ATTTTTCTGAAATGAGAAAGTCTAGAAAAGGAGATGAAGTACCAGAAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCTGAAATGAGAAAGTCTAGAAAAGGAGATGAAGTACCAGAAGCA  650

seq1  TTGCAGAACTGGTGAGTGACGTTGTAGAGTCTGCAGCAGGACGACTGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGAACTGGTGAGTGACGTTGTAGAGTCTGCAGCAGGACGACTGTGG  700

seq1  CGAGACCCAGTCAAAGTAGTCATCGATCCAGGACGAGGGGGCGAAGCCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGACCCAGTCAAAGTAGTCATCGATCCAGGACGAGGGGGCGAAGCCTA  750

seq1  CTCGGGTGCTGGAGAGAGGAGAGACAGTAACAGGCTTGTTGGGACTCTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGGTGCTGGAGAGAGGAGAGACAGTAACAGGCTTGTTGGGACTCTTG  800

seq1  CAAACTCTAGTTCCTTCCCTCCACTTGACACTGCTGCTATACTACTGACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTCTAGTTCCTTCCCTCCACTTGACACTGCTGCTATACTACTGACC  850

seq1  -AAACCTTCAAGAAAACCCAT-GGCCAATGAGCCCACTTTGCTCACAGGA  898
       |||||||||||||||||||| ||||||||||||||||||||||||||| 
seq2  AAAACCTTCAAGAAAACCCATGGGCCAATGAGCCCACTTTGCTCACAGGG  900

seq1  AACTTGCTCTAACACTTTTTGAAATGACAACAAAAAGCAACCTTCCCAAA  948
      |||||||||| ||||||||||||||||| |||||||||||||||||||||
seq2  AACTTGCTCT-ACACTTTTTGAAATGAC-ACAAAAAGCAACCTTCCCAAA  948

seq1  AGAAAATCTGGTTTTAGTGAGAAATTTCAGGCCTGAGTTGATCCTGGCCA  998
      ||||||||||||||||||||| ||||||||||||||| || |||||||||
seq2  AGAAAATCTGGTTTTAGTGAG-AATTTCAGGCCTGAG-TGTTCCTGGCCA  996

seq1  CGAGTTCCTCCTTCTACCTCTTTCTCTTCTCTTCTC-TCTTTCATTCCTT  1047
      |||||||||||||||||| |||||||||   ||||| || |||||||| |
seq2  CGAGTTCCTCCTTCTACC-CTTTCTCTT---TTCTCATCCTTCATTCC-T  1041

seq1  CCCCCAC-TCTCTCAAAGATTTATTTATTTAT-----TTATTTATTTATT  1091
      ||||||| ||||||  ||||||| ||||||||     |||||||||||||
seq2  CCCCCACTTCTCTC-GAGATTTA-TTATTTATTATGATTATTTATTTATT  1089