BAC Information

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BAC

Clone NameB6Ng01-154P10
Chromosome18 (Build37)
Map Location 38,261,985 - 38,461,689
singlet/doubletdoublet
Overlap genePcdh1, LOC100042583, 1700086O06Rik, 0610009O20Rik, Pcdh12, Rnf14
Upstream genePcdha1, Pcdha@, Pcdha2, Pcdha3, Pcdha4, Pcdha5, Pcdha6, Pcdha7, Pcdha8, Pcdha9, Pcdha10, Pcdha11, Pcdha12, Pcdhac1, Pcdhac2, Pcdhb1, Pcdhb2, Pcdhb3, Pcdhb4, Pcdhb5, Pcdhb6, Pcdhb7, Pcdhb8, Pcdhb9, Pcdhb10, Pcdhb11, Pcdhb12, Pcdhb13, Pcdhb14, Pcdhb15, Pcdhb16, Pcdhb17, Pcdhb18, Pcdhb19, Pcdhb20, Pcdhb21, Pcdhb22, Slc25a2, Taf7, EG666693, Pcdhg@, Pcdhga1, Pcdhga2, Pcdhga3, Pcdhgb1, Pcdhga4, Pcdhgb2, Pcdhga5, Pcdhga6, Pcdhga7, Pcdhgb4, Pcdhga8, Pcdhgb5, Pcdhga9, Pcdhgb6, Pcdhga10, Pcdhgb7, Pcdhga11, Pcdhgb8, Pcdhga12, Pcdhgc3, Pcdhgc4, Pcdhgc5, Diap1, Hdac3, 4631403P03Rik, Fchsd1, Centd3
Downstream geneGnpda1, LOC240219, LOC100041839, Ndfip1, Spry4, 9630014M24Rik, LOC100041865, LOC100041875, LOC100042671, LOC666809, LOC100041894, Fgf1, EG545253, Arhgap26
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154P10.bB6Ng01-154P10.g
ACCDH949870DH949871
length1,1981,112
definitionDH949870|Mus musculus domesticus DNA, BAC clone: B6Ng01-154P10, 5' end.DH949871|Mus musculus domesticus DNA, BAC clone: B6Ng01-154P10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,460,478 - 38,461,689)(38,261,985 - 38,263,112)
sequence
gaattctttctacctctgagccacatccccagccctgccattcttctaaa
atcatcaagcattttcaattcattagcattaggattcatgaacactaggg
ggaaatttacaaaatcaaatccatttgttctttatgcactgaattaaaga
tcaccaaggtagtcttcaattaaagacgatgttaaaagtttctaaaaacg
gataggagaaattaagttttgggtctacctgagttggtgacagccatttg
ccactaagtgtgaatgaaggtggggaggaggatggataatctggtggcag
ttcaaagttcagcacaagtggtggcagaaagcaaatggtgtattcaaagc
cactattctggagagactcatttgaattgcctgaaccaaaaacaaaaatc
agaaaggatcagttcatcaacactggagtgtcccaaactaccgagcaggg
ctcagccctgaggctgtagtcaaggggacaaaaccctcccgaagcaccgt
ccatcccttacgttaagttcctagtctctgccttcaaaaacaaaacaaaa
caaaacaacaccttttaagcccttgaaaatctacttaggtgctgtgtgat
gtataaagccacacaactcattcttgtaaacacttcctggtacaattcct
aacactaaggaccaagtcatgaacaatgtttgtttaactgttgatttata
gtagacaaagacacaatctagagaaaaagacatttatttctatgagacaa
ctacgacttactaagaccagcacatgccaactagtcatgaatcagtttgt
gccaacaaaatattatcaggcttgaggacataacacggcacacaacacag
ccacaggctcatctaagtgatctcagctttctagagaaacgttgtgagaa
aatgtgcatcaagagctctgcaaagaaccacagtttttgatttctccaat
aaaaggtggcagaaggaagagcatgccccacacctgccccacacctgccc
cacacctgttccattcctgtagcctggatctagaaatcagctgaagtaaa
ctatttggcctcctagggagttcagaacccttccagccacacatacgtct
gcttcttttataccctcgaatataacagcggtacttgatcacatcattag
aagacaaccgtcgtaaatgcaggaatattcctcactcaatggccaaaa
gaattctagaggggctgaggagctgttgcagtcaaagcccaggccaggtc
ctgcctctgcattgctgttcctgcagatcaggtgccagactaggaactgc
tgcctagagatgctcgctatgcacacacaagagaggtcaacatccataca
gagattctgggaaaaagggcatgaggcaactgaaggaaatggaagctctg
aattgagatcttggattcctcaggctaagaacaatctccaagcgtccttc
tctccggtttctaagcctaattctcagtataagtctcagtctaagcctga
cttctcagtcacccttctccctgcggcctctgaccccagccaggccctgc
agccttcagggagcctccaaacttctccgcacatggggaacccatttatc
gacattaccctatgagtgactggcaggcaggtgagagaggaagattacag
aacaggcttagcttccagctaacagggtgcaccttcaccacaagaatgca
gccaattattccccctgttgtgggggataaccattaatgccacaggaaat
tctaaacaagtggttaaatcattactggggaaggctcagccagcctggcc
caccactaagttcactgggtcttggtctcagaaaagctcacctgagagat
tgggaaaggaggaggagagagtattggctcagccatttagcatcaccagc
agccagtctggcagaggctggcccggatccatcgtcccttctctgagcct
cgtttctggctattgcttccaacccgtcagctgcccttctcaatcacatc
ccacttggtgggccaatgcttttattccattgacaaccatttactaagca
cctactatgtgccagcagtattctacagcattccctggggatacaatgtg
accatggcaagtagtgcctatcctcagtagctctcagtccagtgaaaggg
cagatatgaggagctgaaccattactaataataattaaagcgagcagtgc
tcaggaggtagaaacaggactgggtattttacatggactacctagtgggg
aagatggtgggccactctggggtgacagcagccgtggtatacactgggac
tgcagatcatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_38460478_38461689
seq2: B6Ng01-154P10.b_45_1242 (reverse)

seq1  TTTTGGCCATTGAGTTGAGATATA-TCCTGCATATTTTATGCAGCTAGTC  49
      |||||||||||||| ||||  ||| |||||||   |||| |  | | |||
seq2  TTTTGGCCATTGAG-TGAGGAATATTCCTGCA---TTTACGACGGTTGTC  46

seq1  TTCTAATTAGTAGTTGATC-AGTACAGCTGTTGATTATCGGAGGTAATAA  98
      |||||||    |  ||||| ||||| ||||||   |||  ||||  ||||
seq2  TTCTAAT---GATGTGATCAAGTACCGCTGTT--ATATTCGAGGGTATAA  91

seq1  AAGGAAGCAGACAGTAATGTGTTGCTGCGAAGGGTTCTTGACACTCCCTG  148
      || ||||||||| || |||||| |||| ||||||||| ||| ||||||| 
seq2  AA-GAAGCAGAC-GT-ATGTGTGGCTG-GAAGGGTTC-TGA-ACTCCCTA  135

seq1  GAGGGCCACATGGTTGATTTCTGCTTGATTTCTAGAATCAGGGCTACAGG  198
      |  ||||| || ||| | ||| || |||||||||| |||  |||||||||
seq2  GGAGGCCAAATAGTTTACTTCAGC-TGATTTCTAG-ATCCAGGCTACAGG  183

seq1  AATGGGACAGGTGTGGGGCAGGTGTGGGGCAGGTGTGGGGCATGCTCTTC  248
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAACAGGTGTGGGGCAGGTGTGGGGCAGGTGTGGGGCATGCTCTTC  233

seq1  C-TCTGCCACCTTTTATTGGAGAAAATCAAAACTGTGGTTCCTTTGCAGA  297
      | |||||||||||||||||||||||   |||||||||||| |||||||||
seq2  CTTCTGCCACCTTTTATTGGAGAAATCAAAAACTGTGGTT-CTTTGCAGA  282

seq1  GCTCTTGATGCACATTTTCTCACAACGTTTCTCTAG-AAGCTGAGATCAC  346
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GCTCTTGATGCACATTTTCTCACAACGTTTCTCTAGAAAGCTGAGATCAC  332

seq1  TTAGATGAGCCTGTGGCTGTGTTGTGTGCCGTGTTATGTCCTCAAGCCTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATGAGCCTGTGGCTGTGTTGTGTGCCGTGTTATGTCCTCAAGCCTG  382

seq1  ATAATATTTTGTTGGCACAAACTGATTCATGACTAGTTGGCATGTGCTGG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATTTTGTTGGCACAAACTGATTCATGACTAGTTGGCATGTGCTGG  432

seq1  TCTTAGTAAGTCGTAGTTGTCTCATAGAAATAAATGTCTTTTTCTCTAGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGTAAGTCGTAGTTGTCTCATAGAAATAAATGTCTTTTTCTCTAGA  482

seq1  TTGTGTCTTTGTCTACTATAAATCAACAGTTAAACAAACATTGTTCATGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTCTTTGTCTACTATAAATCAACAGTTAAACAAACATTGTTCATGA  532

seq1  CTTGGTCCTTAGTGTTAGGAATTGTACCAGGAAGTGTTTACAAGAATGAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTCCTTAGTGTTAGGAATTGTACCAGGAAGTGTTTACAAGAATGAG  582

seq1  TTGTGTGGCTTTATACATCACACAGCACCTAAGTAGATTTTCAAGGGCTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGGCTTTATACATCACACAGCACCTAAGTAGATTTTCAAGGGCTT  632

seq1  AAAAGGTGTTGTTTTGTTTTGTTTTGTTTTTGAAGGCAGAGACTAGGAAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTGTTGTTTTGTTTTGTTTTGTTTTTGAAGGCAGAGACTAGGAAC  682

seq1  TTAACGTAAGGGATGGACGGTGCTTCGGGAGGGTTTTGTCCCCTTGACTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACGTAAGGGATGGACGGTGCTTCGGGAGGGTTTTGTCCCCTTGACTA  732

seq1  CAGCCTCAGGGCTGAGCCCTGCTCGGTAGTTTGGGACACTCCAGTGTTGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTCAGGGCTGAGCCCTGCTCGGTAGTTTGGGACACTCCAGTGTTGA  782

seq1  TGAACTGATCCTTTCTGATTTTTGTTTTTGGTTCAGGCAATTCAAATGAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTGATCCTTTCTGATTTTTGTTTTTGGTTCAGGCAATTCAAATGAG  832

seq1  TCTCTCCAGAATAGTGGCTTTGAATACACCATTTGCTTTCTGCCACCACT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCAGAATAGTGGCTTTGAATACACCATTTGCTTTCTGCCACCACT  882

seq1  TGTGCTGAACTTTGAACTGCCACCAGATTATCCATCCTCCTCCCCACCTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGAACTTTGAACTGCCACCAGATTATCCATCCTCCTCCCCACCTT  932

seq1  CATTCACACTTAGTGGCAAATGGCTGTCACCAACTCAGGTAGACCCAAAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCACACTTAGTGGCAAATGGCTGTCACCAACTCAGGTAGACCCAAAA  982

seq1  CTTAATTTCTCCTATCCGTTTTTAGAAACTTTTAACATCGTCTTTAATTG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATTTCTCCTATCCGTTTTTAGAAACTTTTAACATCGTCTTTAATTG  1032

seq1  AAGACTACCTTGGTGATCTTTAATTCAGTGCATAAAGAACAAATGGATTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTACCTTGGTGATCTTTAATTCAGTGCATAAAGAACAAATGGATTT  1082

seq1  GATTTTGTAAATTTCCCCCTAGTGTTCATGAATCCTAATGCTAATGAATT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTGTAAATTTCCCCCTAGTGTTCATGAATCCTAATGCTAATGAATT  1132

seq1  GAAAATGCTTGATGATTTTAGAAGAATGGCAGGGCTGGGGATGTGGCTCA  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGCTTGATGATTTTAGAAGAATGGCAGGGCTGGGGATGTGGCTCA  1182

seq1  GAGGTAGAAAGAATTC  1212
      ||||||||||||||||
seq2  GAGGTAGAAAGAATTC  1198

seq1: chr18_38261985_38263112
seq2: B6Ng01-154P10.g_69_1180

seq1  GAATTCTAGAGGGGCTGAGGAGCTGTTGCAGTCAAAGCCCAGGCCAGGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGAGGGGCTGAGGAGCTGTTGCAGTCAAAGCCCAGGCCAGGTC  50

seq1  CTGCCTCTGCATTGCTGTTCCTGCAGATCAGGTGCCAGACTAGGAACTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCTGCATTGCTGTTCCTGCAGATCAGGTGCCAGACTAGGAACTGC  100

seq1  TGCCTAGAGATGCTCGCTATGCACACACAAGAGAGGTCAACATCCATACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAGAGATGCTCGCTATGCACACACAAGAGAGGTCAACATCCATACA  150

seq1  GAGATTCTGGGAAAAAGGGCATGAGGCAACTGAAGGAAATGGAAGCTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTCTGGGAAAAAGGGCATGAGGCAACTGAAGGAAATGGAAGCTCTG  200

seq1  AATTGAGATCTTGGATTCCTCAGGCTAAGAACAATCTCCAAGCGTCCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAGATCTTGGATTCCTCAGGCTAAGAACAATCTCCAAGCGTCCTTC  250

seq1  TCTCCGGTTTCTAAGCCTAATTCTCAGTATAAGTCTCAGTCTAAGCCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCGGTTTCTAAGCCTAATTCTCAGTATAAGTCTCAGTCTAAGCCTGA  300

seq1  CTTCTCAGTCACCCTTCTCCCTGCGGCCTCTGACCCCAGCCAGGCCCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCAGTCACCCTTCTCCCTGCGGCCTCTGACCCCAGCCAGGCCCTGC  350

seq1  AGCCTTCAGGGAGCCTCCAAACTTCTCCGCACATGGGGAACCCATTTATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTCAGGGAGCCTCCAAACTTCTCCGCACATGGGGAACCCATTTATC  400

seq1  GACATTACCCTATGAGTGACTGGCAGGCAGGTGAGAGAGGAAGATTACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTACCCTATGAGTGACTGGCAGGCAGGTGAGAGAGGAAGATTACAG  450

seq1  AACAGGCTTAGCTTCCAGCTAACAGGGTGCACCTTCACCACAAGAATGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGCTTAGCTTCCAGCTAACAGGGTGCACCTTCACCACAAGAATGCA  500

seq1  GCCAATTATTCCCCCTGTTGTGGGGGATAACCATTAATGCCACAGGAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATTATTCCCCCTGTTGTGGGGGATAACCATTAATGCCACAGGAAAT  550

seq1  TCTAAACAAGTGGTTAAATCATTACTGGGGAAGGCTCAGCCAGCCTGGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAACAAGTGGTTAAATCATTACTGGGGAAGGCTCAGCCAGCCTGGCC  600

seq1  CACCACTAAGTTCACTGGGTCTTGGTCTCAGAAAAGCTCACCTGAGAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACTAAGTTCACTGGGTCTTGGTCTCAGAAAAGCTCACCTGAGAGAT  650

seq1  TGGGAAAGGAGGAGGAGAGAGTATTGGCTCAGCCATTTAGCATCACCAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAAGGAGGAGGAGAGAGTATTGGCTCAGCCATTTAGCATCACCAGC  700

seq1  AGCCAGTCTGGCAGAGGCTGGCCCGGATCCATCGTCCCTTCTCTGAGCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGTCTGGCAGAGGCTGGCCCGGATCCATCGTCCCTTCTCTGAGCCT  750

seq1  CGTTTCTGGCTATTGCTTCCAACCCGTCAGCTGCCCTTCTCAATCACATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTCTGGCTATTGCTTCCAACCCGTCAGCTGCCCTTCTCAATCACATC  800

seq1  CCACTTGGTGGGCCAATGCTTTTATTCCATTGACAACCATTTACTAAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTGGTGGGCCAATGCTTTTATTCCATTGACAACCATTTACTAAGCA  850

seq1  CCTACTATGTGCCAGCAGTATTCTACAGCATTCCCTGGGGATACAATGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTATGTGCCAGCAGTATTCTACAGCATTCCCTGGGGATACAATGTG  900

seq1  ACCATGGCAAGTAGGTGCCTATCCTCAGTAGCTCTCAGTCCAGTGGAAAG  950
      ||||||||||||| |||||||||||||||||||||||||||||| |||||
seq2  ACCATGGCAAGTA-GTGCCTATCCTCAGTAGCTCTCAGTCCAGT-GAAAG  948

seq1  GGCAGATAATGAGGAGCTGAACCAATAACTAATAAATAATTAAAGCGGAG  1000
      ||||||| ||||||||||||||| || |||||| |||||||||||| |||
seq2  GGCAGAT-ATGAGGAGCTGAACC-ATTACTAAT-AATAATTAAAGC-GAG  994

seq1  GCAAGTGCTCAGGAGGGTAGAAACAAGGGACTGGGTATTTTACATGGACT  1050
         ||||||||||| ||||||||||  |||||||||||||||||||||||
seq2  --CAGTGCTCAGGA-GGTAGAAACA--GGACTGGGTATTTTACATGGACT  1039

seq1  ACCTAGT-GGGAAGATGGTGGAGCCCACCCTGGGGTTGGCCAGCAGTCTG  1099
      ||||||| ||||||||||||  | |||| |||||||  | |||||| | |
seq2  ACCTAGTGGGGAAGATGGTG--GGCCACTCTGGGGT--GACAGCAG-CCG  1084

seq1  TGCCCATCACTGGGACCTGCAGATCATGG  1128
      ||     |||||||| |||||||||||||
seq2  TGGTATACACTGGGA-CTGCAGATCATGG  1112