BAC Information

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BAC

Clone NameB6Ng01-155C01
Chromosome1 (Build37)18 (Build37)
Map Location 140,270,330 - 140,271,17111,288,803 - 11,289,088
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100043143, Ptprc, LOC100042596, Atp6v1g3, LOC100042600
Downstream geneNek7, LOC545363, LOC667745, Lhx9, 2310009B15Rik, 1700019P21Rik, LOC100042623, Dennd1b, Crb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-155C01.bB6Ng01-155C01.g
ACCDH949992DH949993
length840309
definitionDH949992|Mus musculus domesticus DNA, BAC clone: B6Ng01-155C01, 5' end.DH949993|Mus musculus domesticus DNA, BAC clone: B6Ng01-155C01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(140,270,330 - 140,271,171)(11,288,803 - 11,289,088)
sequence
gaattctttgaatgtttatcagtttaaaggatctcaaaggacagcattat
tacattgaccatagatgttaaatttatacacaaatatacagtactattct
tgtttgttattttctttgagcgagggcaaatttaaaacatagaggaaagt
acaaacaaaacatactggagatgccttgcctgtgctgagatttaacattc
tgcatgattttatttcatctgtttcttatctctaaagtgtcctttttaac
cacatcactttcataactccaacataacgatatcatctccttataatgta
aaaactgtgtttcagttttccttgatgtctccacattgacatttatacct
gtgttagtgtgaggaagggtgatggttgtggtcacaattctgtacccata
gacttccctcaattcactaatgatccctgtctccctaagtgtaaaagtca
cttctttcttaatcaacgctcatgacgatagagtggttcgttttcttata
atcccatcgtgtggattgttacattctcactgaatgaggttgagtagtct
ctgtttcctataggctcttcattatgcctggacgtttgatttgagttgaa
aatgttgactgaccatgcttcaaggcttggccaccacccaccctgagagg
tctctattatctaagacattgtttggaataccctaatttgaattctagtt
ttggggtgtttattttatctcatcattatacttcaatgactaccagacag
tggtaaaaatttcctggaaattatctgtcattatatattcacctttaagc
cactgttggtctgatgatgaaatactccctgcttagattc
aaggggcaggggtggggtgggagggtggggatctgcaactgatgcttgca
aaggaaaaattaactttctccaatagtctaataggatatattcaccacac
ttgaaagaagatctcatgctaggagtagttggccaacacaaagtaaactc
atttttttttgtaaaacggtttcttatttttgtgtttttatggattttta
tatgtgtgcattgtgtgtttgtttcttgtgttagctggtttatttaaaga
aagagacaaaatattttgagttaggtgagtaggagggtgggcagagttgg
gtgagtagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_140270330_140271171
seq2: B6Ng01-155C01.b_41_880

seq1  GAATTCTTTTAATGTTTATCAGTTTAAAGGATCTCAAAGGACAGCATTAT  50
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGAATGTTTATCAGTTTAAAGGATCTCAAAGGACAGCATTAT  50

seq1  TACATTGACCATAGATGTTAAATTTATACACAAATATACAGTACTATTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTGACCATAGATGTTAAATTTATACACAAATATACAGTACTATTCT  100

seq1  TGTTTGTTATTTTCTTTGAGCGAGGGCAAATTTAAAACATAGAGGAAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTATTTTCTTTGAGCGAGGGCAAATTTAAAACATAGAGGAAAGT  150

seq1  ACAAACAAAACATACTGGAGATGCCTTGCCTGTGCTGAGATTTAACATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAAACATACTGGAGATGCCTTGCCTGTGCTGAGATTTAACATTC  200

seq1  TGCATGATTTTATTTCATCTGTTTCTTATCTCTAAAGTGTCCTTTTTAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGATTTTATTTCATCTGTTTCTTATCTCTAAAGTGTCCTTTTTAAC  250

seq1  CACATCACTTTCATAACTCCAACATAACGATATCATCTCCTTATAATGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCACTTTCATAACTCCAACATAACGATATCATCTCCTTATAATGTA  300

seq1  AAAACTGTGTTTCAGTTTTCCTTGATGTCTCCACATTGTCATTTATACCT  350
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAAACTGTGTTTCAGTTTTCCTTGATGTCTCCACATTGACATTTATACCT  350

seq1  GTGTTAGTGTGAGGAAGGGTGATGGTTGTGGTCACAATTCTGTACCCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAGTGTGAGGAAGGGTGATGGTTGTGGTCACAATTCTGTACCCATA  400

seq1  GACTTCCCTCAGTTCACTAATGATCCCTGTCTCCCTAAGTGTAAAAGTCA  450
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GACTTCCCTCAATTCACTAATGATCCCTGTCTCCCTAAGTGTAAAAGTCA  450

seq1  CTTCTTTCTTAATCAACGCTCATGACGATAGAGTGGTTCGTTTTCTTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTCTTAATCAACGCTCATGACGATAGAGTGGTTCGTTTTCTTATA  500

seq1  ATCCCATCGTGTGGATTGTTACATTCTCACTGAATGAGGTTGAGTAGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCATCGTGTGGATTGTTACATTCTCACTGAATGAGGTTGAGTAGTCT  550

seq1  CTGTTTCCTATAGGCTCTTCATTATGCCTGGACGTTTGATTTGAGTTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTCCTATAGGCTCTTCATTATGCCTGGACGTTTGATTTGAGTTGAA  600

seq1  AATGTTGACTGACCATGCTTCAAGGCTTGGCCACCACCCACCCTGAGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTGACTGACCATGCTTCAAGGCTTGGCCACCACCCACCCTGAGAGG  650

seq1  TCTCTATTATCTAAGACATTGTTTGGAATACCCTAGTTTGAGTTCTTGTT  700
      ||||||||||||||||||||||||||||||||||| ||||| |||| |||
seq2  TCTCTATTATCTAAGACATTGTTTGGAATACCCTAATTTGAATTCTAGTT  700

seq1  TTGGGGTGTTTTATTTTATCTCAGCATTTTACTTCAATGACTACCACACA  750
      |||||||| |||||||||||||| |||| ||||||||||||||||| |||
seq2  TTGGGGTG-TTTATTTTATCTCATCATTATACTTCAATGACTACCAGACA  749

seq1  GTTGTAATAATTTCCTGGATTTTTATCTGTCATTTTATAGTCACCTTTAA  800
      || |||| |||||||||||   |||||||||||| |||| ||||||||||
seq2  GTGGTAAAAATTTCCTGGA-AATTATCTGTCATTATATATTCACCTTTAA  798

seq1  GTCTCTGTTGGTCTGATGATGAAATTATCCCTGCTTTGATTC  842
      | | |||||||||||||||||||||  ||||||||| |||||
seq2  GCCACTGTTGGTCTGATGATGAAATACTCCCTGCTTAGATTC  840

seq1: chr18_11288803_11289088
seq2: B6Ng01-155C01.g_95_379 (reverse)

seq1  CCTACTCACCCAACTCTGCCCACCCTCCTACTCACCTAACTCAAAATATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTCACCCAACTCTGCCCACCCTCCTACTCACCTAACTCAAAATATT  50

seq1  TTGTCTCTTTCTTTAAATAAACCAGCTAACACAAGAAACAAACACACAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCTTTCTTTAAATAAACCAGCTAACACAAGAAACAAACACACAAT  100

seq1  GCACACATATAAAAATCCATAAAAACACAAAAATAAGAAACCGTTTTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACATATAAAAATCCATAAAAACACAAAAATAAGAAACCGTTTTACA  150

seq1  AAAAAAAATGAGTTTACTTTGTGTTGGCCAACTACTCCTAGCATGAGATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAATGAGTTTACTTTGTGTTGGCCAACTACTCCTAGCATGAGATC  200

seq1  TTCTTTCAAGTGTGGTGAATATATCCTATTAGACTATTGGAGAAAGTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCAAGTGTGGTGAATATATCCTATTAGACTATTGGAGAAAGTTAA  250

seq1  TTTTTCCTTTGCAAGCATCAGTTGCAGATAGCCCAC  286
      |||||||||||||||||||||||||||||  |||||
seq2  TTTTTCCTTTGCAAGCATCAGTTGCAGAT-CCCCAC  285