BAC Information

Click to search

BAC

Clone NameB6Ng01-155N21
Chromosome18 (Build37)
Map Location 28,731,202 - 28,855,890
singlet/doubletdoublet
Overlap genenone
Upstream geneEG665646, EG271505, EG625997
Downstream geneBC051408, LOC100040930, 4930578E11Rik, LOC666073
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-155N21.bB6Ng01-155N21.g
ACCDH950526DH950527
length1,2161,072
definitionDH950526|Mus musculus domesticus DNA, BAC clone: B6Ng01-155N21, 5' end.DH950527|Mus musculus domesticus DNA, BAC clone: B6Ng01-155N21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,854,642 - 28,855,890)(28,731,202 - 28,732,278)
sequence
gaattcttgtaccttctgatctagagacagctcttccaagaccagcccag
aagtgagccatggacactgaaaaaagttctatgctagctatatacagcat
tgctcagtccaggaattggtgagtgtttacgagggattcctaaggtccaa
catacacacccatattctatctcaaatggtagattttaatcattaaattc
gggggagggtaacaattgttcttaacctaaaacacctaagaaaccataga
agagttcagtttggaaatattgtctatgatattgaggtatgaaacctgca
gacattactaaaatcgcagtctcttcaactgcagggctatgcctatcata
gggaactaatgcctgagtcagtccctcatacttcatacctcaacttttta
ttttctcaaagctggcttgagtgtgctatctctcattcatactcactaag
tacggcggcactggattcatgctgttgctttgtgttgttattttataagg
gattaatatatctcactaacttgctgatacttgatgattccagaatagag
attccatccagtctaaaatagagttgaagaaatttccaagtcaaagccag
aaggaaaccagctctcagactcattatttttgtttgccattaatggcgtg
ttggcaaggtggcggtgatatcagttgcatttggctgaggatacaaatta
caggaaatgaaagaaatcctttcaatctttctagtcttaaaatgattctt
tgcaggctttatgtttgaaagttaatgggattttatgctgtctttcattg
agagtcgcagacaggttgtgtctactaccttgttatcacatgacttcctg
gagctcagaacagcagtttgtgcactgaagccagaagtccagacttaagg
cattggcctgctgcttactagccctatgcgtgtctaaccctccatttcat
tgcctgtaaagtgagcggatgcttgctctaccccactcgtaaagtttata
ggctcaaataaaatatgaatgtggaagcacttaccatagtagcacttaca
cagtattagaccatgactttggatcggatatggctaaatagttcatgtca
ccacagtggttaggcatgtataaatagctttcttgctcgttctgcttaca
ttttggagaaaatatttttcttcaactgtttccagacagacgcatatagg
gcacacaatgggtttg
gaattctttatatcttctactttatttttaatttcctcatagccacacat
caccatcactgatattgatgagtttagaagtcaattaacactctgttatc
acttgaagctctgaagcatttagacaattttaaagcttctgagtgacgaa
tattgtaatttctaatatagacagtctatctgtagtcaatgactctattc
ttgaatttgctcttaggttttcttaatgctttcattacattcaatgccat
ggtgcacatgcctttccataatggggagcaggtgaagtggcctatacatt
caaggaacagattctgcgtagattttagaagaaaacattacgaagttgca
ttgtgaagttaatatataatttcatgactcaagtgacttgccaagtttct
agggtactaagggtaggtgacgttaagggagaaaacaacttaaggttggg
cactgtgaatttgttctcctatcccccttttaaagttattttggtatact
tgaattctttgctggaaatacataaacaggtcacttcttgtggaacattt
aattacctgtgacatactcctgggttctcttctctattacagaatcaaag
agtgagacaatcaagcctctatcacatgttcaaagagggaaaaattgtta
gattcttggactttctgatgaaaaaaagatagccattgttggactagcct
gaccacaggacaggctctctaagacattcccttttaatatatgttccgtt
tcatccaatttttatataattatattctgttgtattatatgcctagatgc
accatttctaagagaagcattttaaattggaaggataaaatagactaaga
gagattgacagaaagtttcccaatctgttggtgacttttttgtcttattg
acagtgtcttttgccttacagaagctttgcaattttatgaggttcatttg
tcatgctcatcttacagcacaaggccattgctgttctattcaggattttt
cccctggtgccatatcttctagactttcccacttctcctctataagtttc
aggtgtcttgggttttatgtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_28854642_28855890
seq2: B6Ng01-155N21.b_49_1264 (reverse)

seq1  CAAACCCATTGTG---CCTAATAGCTGCTGCTCTGAAAAACAAGTCTTTG  47
      |||||||||||||   ||||   ||  ||| ||||  |||||     |||
seq2  CAAACCCATTGTGTGCCCTATATGCGTCTG-TCTG-GAAACA----GTTG  44

seq1  AAAGAAAAAAAATTATTTCTCTCCAAAAAATGTAAGCAGTAACAGAAGCA  97
       ||||||||    ||||| |||||  ||||||||||||| |||   ||||
seq2  -AAGAAAAA----TATTT-TCTCC--AAAATGTAAGCAG-AAC--GAGCA  83

seq1  AGGAAAAGCTATTTTTATCAATGCTTATACAACTGGTGGTGACATGAAAC  147
      ||  |||||||  |||||  |||| || || ||| ||||||||||| |||
seq2  AG--AAAGCTA--TTTATACATGCCTA-ACCACT-GTGGTGACATG-AAC  126

seq1  TATTTAAGCCATATCTGAATCCAAAGTTCATGGTCCTAATAACTGTGGTA  197
      ||||| ||||||||| | |||||||| ||||||| ||||| ||||| |||
seq2  TATTT-AGCCATATCCG-ATCCAAAG-TCATGGT-CTAAT-ACTGT-GTA  170

seq1  AGTGCTTAACTATGGTAAGTGCTTCCACATTCATTATTTTATTTGAGCCT  247
      ||||||  ||||||||||||||||||||||||| ||||||||||||||||
seq2  AGTGCT--ACTATGGTAAGTGCTTCCACATTCA-TATTTTATTTGAGCCT  217

seq1  ATAAAACTTTACGAGTGGGGTAGAGCAAGCATCCGCTCACTTTACAGGCA  297
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AT-AAACTTTACGAGTGGGGTAGAGCAAGCATCCGCTCACTTTACAGGCA  266

seq1  ATGAAATGGAGGGTTAGACACGCATAGGGCTAGTAAGCAGCAGGCCAATG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATGGAGGGTTAGACACGCATAGGGCTAGTAAGCAGCAGGCCAATG  316

seq1  CCTTAAGTCTGGACCTTCTGGCTTCAGTGCACAAACCTGCTGTTCTGAGC  397
      ||||||||||||| ||||||||||||||||||||| ||||||||||||||
seq2  CCTTAAGTCTGGA-CTTCTGGCTTCAGTGCACAAA-CTGCTGTTCTGAGC  364

seq1  TCCAGGAAGTCATGTGATAACAAGGTAGTAGACACAACCTGTCTGCGACT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGAAGTCATGTGATAACAAGGTAGTAGACACAACCTGTCTGCGACT  414

seq1  CTCAATGAAAGACAGCATAAAATCCCATTAACTTTCAAACATAAAGCCTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATGAAAGACAGCATAAAATCCCATTAACTTTCAAACATAAAGCCTG  464

seq1  CAAAGAATCATTTTAAGACTAGAAAGATTGAAAGGATTTCTTTCATTTCC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAATCATTTTAAGACTAGAAAGATTGAAAGGATTTCTTTCATTTCC  514

seq1  TGTAATTTGTATCCTCAGCCAAATGCAACTGATATCACCGCCACCTTGCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATTTGTATCCTCAGCCAAATGCAACTGATATCACCGCCACCTTGCC  564

seq1  AACACGCCATTAATGGCAAACAAAAATAATGAGTCTGAGAGCTGGTTTCC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACGCCATTAATGGCAAACAAAAATAATGAGTCTGAGAGCTGGTTTCC  614

seq1  TTCTGGCTTTGACTTGGAAATTTCTTCAACTCTATTTTAGACTGGATGGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGCTTTGACTTGGAAATTTCTTCAACTCTATTTTAGACTGGATGGA  664

seq1  ATCTCTATTCTGGAATCATCAAGTATCAGCAAGTTAGTGAGATATATTAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTATTCTGGAATCATCAAGTATCAGCAAGTTAGTGAGATATATTAA  714

seq1  TCCCTTATAAAATAACAACACAAAGCAACAGCATGAATCCAGTGCCGCCG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTATAAAATAACAACACAAAGCAACAGCATGAATCCAGTGCCGCCG  764

seq1  TACTTAGTGAGTATGAATGAGAGATAGCACACTCAAGCCAGCTTTGAGAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAGTGAGTATGAATGAGAGATAGCACACTCAAGCCAGCTTTGAGAA  814

seq1  AATAAAAAGTTGAGGTATGAAGTATGAGGGACTGACTCAGGCATTAGTTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAAGTTGAGGTATGAAGTATGAGGGACTGACTCAGGCATTAGTTC  864

seq1  CCTATGATAGGCATAGCCCTGCAGTTGAAGAGACTGCGATTTTAGTAATG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGATAGGCATAGCCCTGCAGTTGAAGAGACTGCGATTTTAGTAATG  914

seq1  TCTGCAGGTTTCATACCTCAATATCATAGACAATATTTCCAAACTGAACT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGGTTTCATACCTCAATATCATAGACAATATTTCCAAACTGAACT  964

seq1  CTTCTATGGTTTCTTAGGTGTTTTAGGTTAAGAACAATTGTTACCCTCCC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTATGGTTTCTTAGGTGTTTTAGGTTAAGAACAATTGTTACCCTCCC  1014

seq1  CCGAATTTAATGATTAAAATCTACCATTTGAGATAGAATATGGGTGTGTA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAATTTAATGATTAAAATCTACCATTTGAGATAGAATATGGGTGTGTA  1064

seq1  TGTTGGACCTTAGGAATCCCTCGTAAACACTCACCAATTCCTGGACTGAG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGACCTTAGGAATCCCTCGTAAACACTCACCAATTCCTGGACTGAG  1114

seq1  CAATGCTGTATATAGCTAGCATAGAACTTTTTTCAGTGTCCATGGCTCAC  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCTGTATATAGCTAGCATAGAACTTTTTTCAGTGTCCATGGCTCAC  1164

seq1  TTCTGGGCTGGTCTTGGAAGAGCTGTCTCTAGATCAGAAGGTACAAGAAT  1247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGCTGGTCTTGGAAGAGCTGTCTCTAGATCAGAAGGTACAAGAAT  1214

seq1  TC  1249
      ||
seq2  TC  1216

seq1: chr18_28731202_28732278
seq2: B6Ng01-155N21.g_67_1138

seq1  GAATTCTTTATATCTTCTACTTTATTTTTAATTTCCTCATAGCCACACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATATCTTCTACTTTATTTTTAATTTCCTCATAGCCACACAT  50

seq1  CACCATCACTGATATTGATGAGTTTAGAAGTCAATTAACACTCTGTTATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATCACTGATATTGATGAGTTTAGAAGTCAATTAACACTCTGTTATC  100

seq1  ACTTGAAGCTCTGAAGCATTTAGACAATTTTAAAGCTTCTGAGTGACGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAAGCTCTGAAGCATTTAGACAATTTTAAAGCTTCTGAGTGACGAA  150

seq1  TATTGTAATTTCTAATATAGACAGTCTATCTGTAGTCAATGACTCTATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTAATTTCTAATATAGACAGTCTATCTGTAGTCAATGACTCTATTC  200

seq1  TTGAATTTGCTCTTAGGTTTTCTTAATGCTTTCATTACATTCAATGCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTTGCTCTTAGGTTTTCTTAATGCTTTCATTACATTCAATGCCAT  250

seq1  GGTGCACATGCCTTTCCATAATGGGGAGCAGGTGAAGTGGCCTATACATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCACATGCCTTTCCATAATGGGGAGCAGGTGAAGTGGCCTATACATT  300

seq1  CAAGGAACAGATTCTGCGTAGATTTTAGAAGAAAACATTACGAAGTTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAACAGATTCTGCGTAGATTTTAGAAGAAAACATTACGAAGTTGCA  350

seq1  TTGTGAAGTTAATATATAATTTCATGACTCAAGTGACTTGCCAAGTTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAAGTTAATATATAATTTCATGACTCAAGTGACTTGCCAAGTTTCT  400

seq1  AGGGTACTAAGGGTAGGTGACGTTAAGGGAGAAAACAACTTAAGGTTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTACTAAGGGTAGGTGACGTTAAGGGAGAAAACAACTTAAGGTTGGG  450

seq1  CACTGTGAATTTGTTCTCCTATCCCCCTTTTAAAGTTATTTTGGTATACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGAATTTGTTCTCCTATCCCCCTTTTAAAGTTATTTTGGTATACT  500

seq1  TGAATTCTTTGCTGGAAATACATAAACAGGTCACTTCTTGTGGAACATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCTTTGCTGGAAATACATAAACAGGTCACTTCTTGTGGAACATTT  550

seq1  AATTACCTGTGACATACTCCTGGGTTCTCTTCTCTATTACAGAATCAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACCTGTGACATACTCCTGGGTTCTCTTCTCTATTACAGAATCAAAG  600

seq1  AGTGAGACAATCAAGCCTCTATCACATGTTCAAAGAGGGAAAAATTGTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGACAATCAAGCCTCTATCACATGTTCAAAGAGGGAAAAATTGTTA  650

seq1  GATTCTTGGACTTTCTGATGAAAAAAAGATAGCCATTGTTGGACTAGCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTTGGACTTTCTGATGAAAAAAAGATAGCCATTGTTGGACTAGCCT  700

seq1  GACCACAGGACAGGCTCTCTAAGACATTCCCTTTTAATATATGTTCCGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACAGGACAGGCTCTCTAAGACATTCCCTTTTAATATATGTTCCGTT  750

seq1  TCATCCAATTTTTATATAATTATATTCTGTTGTATTATATGCCTAGATGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCAATTTTTATATAATTATATTCTGTTGTATTATATGCCTAGATGC  800

seq1  ACCATTTCTAAGAGAAGCATTTTAAATTGGAAGGATAAAATAGACTAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTCTAAGAGAAGCATTTTAAATTGGAAGGATAAAATAGACTAAGA  850

seq1  GAGATTGACAGAAAGTTTCCCAATCTGTTGGTGACTTTTTTGTCTTATTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTGACAGAAAGTTTCCCAATCTGTTGGTGACTTTTTTGTCTTATTG  900

seq1  ACAGTGTCTTTTGCCTTACAGAAGCTTTGCAATTTTATGAGGTTCCATTT  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ACAGTGTCTTTTGCCTTACAGAAGCTTTGCAATTTTATGAGGTT-CATTT  949

seq1  GTCAATGCTCAATCTTACAGCACAA-GCCATTGCTGTTCTATTCAGGATT  999
      ||| |||||| |||||||||||||| |||||||||||||||||||||| |
seq2  GTC-ATGCTC-ATCTTACAGCACAAGGCCATTGCTGTTCTATTCAGGA-T  996

seq1  TTTTCCCCTGTGCCCATATCTTCTAGACTTTTCCCCACTTTCTCCTCTAT  1049
      ||||||||||   ||||||||||||||||||  ||||| |||||||||||
seq2  TTTTCCCCTGGTGCCATATCTTCTAGACTTT--CCCAC-TTCTCCTCTAT  1043

seq1  AAGTTTCA-GTGTCTCTGGTTTTATGTGG  1077
      |||||||| ||||||  ||||||||||||
seq2  AAGTTTCAGGTGTCTTGGGTTTTATGTGG  1072